Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46740 * 2 1 4 4 C 1.50699 * 109.47086 * 240.00099 * 2 1 3 5 5 H 1.07997 * 120.00215 * 239.14863 * 4 2 1 6 6 C 1.37875 * 120.00143 * 59.13991 * 4 2 1 7 7 N 1.31520 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47132 * 90.00178 * 8 6 4 10 10 H 1.48508 * 109.47264 * 210.00270 * 8 6 4 11 11 H 1.48504 * 109.47150 * 330.00278 * 8 6 4 12 12 N 1.46895 * 109.47119 * 120.00186 * 2 1 3 13 13 C 1.46903 * 111.00301 * 43.68419 * 12 2 1 14 14 C 1.52999 * 109.47089 * 75.34401 * 13 12 2 15 15 O 1.42904 * 109.47198 * 60.57014 * 14 13 12 16 16 C 1.46901 * 111.00204 * 279.73029 * 12 2 1 17 17 C 1.52999 * 109.47207 * 199.75094 * 16 12 2 18 18 H 1.08997 * 109.88235 * 294.67099 * 17 16 12 19 19 C 1.54321 * 109.88396 * 173.63709 * 17 16 12 20 20 C 1.55399 * 102.90186 * 218.40726 * 19 17 16 21 21 C 1.54904 * 101.73693 * 35.48383 * 20 19 17 22 22 N 1.47444 * 109.88914 * 55.70709 * 17 16 12 23 23 H 1.09004 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47077 * 299.99817 * 1 2 3 25 25 H 1.08996 * 109.47199 * 60.00319 * 1 2 3 26 26 H 0.96997 * 119.99832 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46829 * 315.34804 * 13 12 2 28 28 H 1.09003 * 109.47319 * 195.34397 * 13 12 2 29 29 H 1.09002 * 109.47450 * 300.57512 * 14 13 12 30 30 H 1.08995 * 109.47534 * 180.57253 * 14 13 12 31 31 H 0.96704 * 113.99990 * 174.99236 * 15 14 13 32 32 H 1.09004 * 109.46735 * 319.75090 * 16 12 2 33 33 H 1.09002 * 109.47134 * 79.74768 * 16 12 2 34 34 H 1.08992 * 110.71122 * 336.69301 * 19 17 16 35 35 H 1.09010 * 110.70450 * 99.93279 * 19 17 16 36 36 H 1.09004 * 110.87193 * 277.39761 * 20 19 17 37 37 H 1.08993 * 111.06036 * 153.65315 * 20 19 17 38 38 H 1.09007 * 110.37066 * 204.19303 * 21 20 19 39 39 H 1.08994 * 110.37831 * 81.85380 * 21 20 19 40 40 H 1.00901 * 110.99898 * 356.14394 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6645 -1.5804 -1.1315 6 6 1.6847 -0.2498 -2.4826 7 7 0.9151 0.8099 -2.6032 8 14 2.3067 -1.1307 -4.0079 9 1 1.3381 -2.1860 -4.3997 10 1 2.4522 -0.1554 -5.1182 11 1 3.6245 -1.7513 -3.7183 12 7 2.0196 -0.6925 1.1994 13 6 1.2601 -1.9263 1.4419 14 6 1.7024 -3.0014 0.4472 15 8 3.0949 -3.2698 0.6237 16 6 1.9766 0.1912 2.3720 17 6 2.9146 -0.3496 3.4530 18 1 2.5493 -1.3111 3.8136 19 6 2.9996 0.6524 4.6235 20 6 4.4964 0.5792 5.0350 21 6 5.1901 0.3750 3.6651 22 7 4.2750 -0.5033 2.9055 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.6708 1.1341 -3.4842 27 1 0.1958 -1.7288 1.3140 28 1 1.4457 -2.2734 2.4584 29 1 1.5263 -2.6502 -0.5696 30 1 1.1318 -3.9137 0.6205 31 1 3.4277 -3.9958 0.0786 32 1 2.2941 1.1933 2.0836 33 1 0.9589 0.2303 2.7604 34 1 2.7409 1.6573 4.2902 35 1 2.3557 0.3400 5.4458 36 1 4.6768 -0.2698 5.6944 37 1 4.8202 1.5093 5.5019 38 1 6.1576 -0.1094 3.7982 39 1 5.3103 1.3303 3.1544 40 1 4.2958 -0.2823 1.9212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235425262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = -52.864071 kcal Electronic energy + Delta-G solvation = -19020.078920 eV Core-core repulsion = 16255.253826 eV Total energy + Delta-G solvation = -2764.825095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19892 -38.58324 -36.71057 -34.70509 -31.80304 -30.80962 -30.54211 -28.63114 -27.37245 -24.87651 -23.61326 -21.89105 -21.32100 -20.26445 -18.50767 -18.13574 -17.06576 -16.88279 -16.54533 -16.22747 -15.33479 -15.06528 -14.61491 -14.34085 -14.08533 -13.90105 -13.67218 -13.32187 -13.21107 -12.89789 -12.79474 -12.59833 -12.40100 -12.19001 -12.16970 -11.97053 -11.72993 -11.65678 -11.51971 -11.25402 -10.81735 -10.52258 -10.20274 -9.13263 -8.68004 -8.03170 -6.09357 1.43195 1.46214 1.55798 2.46849 3.20325 3.24714 3.70796 3.80641 3.87413 3.91624 4.03442 4.35853 4.43692 4.54245 4.61476 4.63619 4.66818 4.72642 4.79044 4.85954 4.91592 4.96632 5.02957 5.08574 5.12033 5.17226 5.26921 5.37455 5.46043 5.52878 5.76314 5.94021 6.24855 6.35983 6.58295 6.68391 6.81207 7.03478 7.25438 7.57130 9.02458 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.007190 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.849991 B = 3893.488470 C = 4019.026220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.215 3.785 3 H -0.004 1.004 4 C -0.494 4.494 5 H 0.077 0.923 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.269 1.269 12 N -0.517 5.517 13 C 0.062 3.938 14 C 0.071 3.929 15 O -0.566 6.566 16 C 0.041 3.959 17 C 0.093 3.907 18 H 0.067 0.933 19 C -0.136 4.136 20 C -0.118 4.118 21 C 0.037 3.963 22 N -0.679 5.679 23 H 0.042 0.958 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.257 0.743 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.375 0.625 32 H 0.049 0.951 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -3.332 11.584 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.533 4.533 5 H 0.095 0.905 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.194 1.194 12 N -0.240 5.240 13 C -0.066 4.066 14 C -0.007 4.007 15 O -0.370 6.370 16 C -0.088 4.088 17 C -0.017 4.017 18 H 0.084 0.916 19 C -0.175 4.175 20 C -0.156 4.156 21 C -0.092 4.092 22 N -0.310 5.310 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.222 0.778 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.294 -3.455 12.134 13.039 hybrid contribution -1.090 0.601 -1.841 2.223 sum 2.204 -2.854 10.292 10.906 Atomic orbital electron populations 1.22258 1.00541 0.99508 0.99714 1.19128 0.89840 0.92241 0.87983 0.98619 1.21630 1.28733 1.12908 0.90019 0.90542 1.25678 0.95851 0.95911 1.01683 1.70023 1.38039 1.25139 1.23550 0.85648 0.78921 0.78232 0.79372 1.20181 1.21799 1.19374 1.62086 1.54791 1.04825 1.02286 1.22088 0.95449 0.90670 0.98374 1.22472 0.82044 0.95682 1.00491 1.86605 1.24624 1.57581 1.68220 1.22610 0.98057 0.95811 0.92359 1.22142 0.89019 0.97735 0.92829 0.91550 1.22907 0.97948 0.98904 0.97742 1.22688 0.93866 1.02692 0.96347 1.22949 0.97310 0.94661 0.94322 1.61898 1.05802 1.55033 1.08311 0.93913 0.96414 0.91939 0.93414 0.93472 0.91650 0.92113 0.93748 0.77847 0.93251 0.95154 0.91625 0.89568 0.90494 0.89383 0.90455 0.94978 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.64 8.02 71.98 0.58 -7.07 16 2 C 0.22 10.65 2.29 44.17 0.10 10.75 16 3 H 0.00 -0.23 7.59 -2.39 -0.02 -0.25 16 4 C -0.49 -26.17 6.68 25.60 0.17 -26.00 16 5 H 0.08 4.04 5.43 -2.91 -0.02 4.02 16 6 C 0.01 0.33 5.30 84.65 0.45 0.78 16 7 N -0.93 -52.83 11.26 21.45 0.24 -52.58 16 8 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 N -0.52 -21.56 3.41 -875.38 -2.98 -24.54 16 13 C 0.06 2.36 4.79 86.30 0.41 2.78 16 14 C 0.07 2.64 6.43 71.98 0.46 3.10 16 15 O -0.57 -21.07 13.10 -148.98 -1.95 -23.02 16 16 C 0.04 1.49 3.97 86.30 0.34 1.83 16 17 C 0.09 2.92 3.49 45.26 0.16 3.07 16 18 H 0.07 2.18 6.93 -2.39 -0.02 2.16 16 19 C -0.14 -3.29 6.49 31.87 0.21 -3.08 16 20 C -0.12 -2.57 7.08 32.07 0.23 -2.34 16 21 C 0.04 0.99 7.58 86.77 0.66 1.65 16 22 N -0.68 -22.94 7.30 -482.37 -3.52 -26.46 16 23 H 0.04 1.93 6.03 -2.39 -0.01 1.91 16 24 H 0.02 0.75 7.65 -2.39 -0.02 0.73 16 25 H 0.06 3.34 6.00 -2.39 -0.01 3.32 16 26 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.05 1.80 5.23 -2.39 -0.01 1.79 16 28 H 0.07 2.32 6.58 -2.39 -0.02 2.30 16 29 H 0.06 2.62 4.85 -2.39 -0.01 2.61 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.38 10.60 9.12 -74.05 -0.68 9.92 16 32 H 0.05 1.91 7.49 -2.39 -0.02 1.89 16 33 H 0.03 1.06 7.71 -2.39 -0.02 1.04 16 34 H 0.07 1.60 7.78 -2.39 -0.02 1.58 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.34 13.59 7.62 -89.69 -0.68 12.91 16 Total: -1.00 -60.16 301.22 -2.74 -62.90 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.32 Total: 32.98 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 3.77 Total: -14.53 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -6.26 Total: -103.58 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.95 Total: -23.02 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -60.16 -2.74 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235425262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -60.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds