Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47130 * 2 1 4 4 C 1.50705 * 109.46983 * 239.99961 * 2 1 3 5 5 H 1.08007 * 119.99713 * 245.50448 * 4 2 1 6 6 C 1.37868 * 119.99999 * 65.49910 * 4 2 1 7 7 N 1.31519 * 120.00275 * 7.05299 * 6 4 2 8 8 Si 1.86800 * 120.00131 * 187.04829 * 6 4 2 9 9 H 1.48500 * 109.47312 * 94.98518 * 8 6 4 10 10 H 1.48504 * 109.47488 * 214.98764 * 8 6 4 11 11 H 1.48506 * 109.46935 * 334.98571 * 8 6 4 12 12 N 1.46901 * 109.47159 * 119.99902 * 2 1 3 13 13 C 1.47018 * 110.99901 * 171.36342 * 12 2 1 14 14 C 1.53099 * 109.25971 * 182.39180 * 13 12 2 15 15 O 1.43015 * 109.25889 * 303.15502 * 14 13 12 16 16 C 1.43018 * 113.74028 * 58.66253 * 15 14 13 17 17 H 1.09006 * 109.53695 * 61.29036 * 16 15 14 18 18 C 1.52995 * 109.50616 * 181.39769 * 16 15 14 19 19 N 1.46907 * 109.47347 * 297.42974 * 18 16 15 20 20 C 1.46893 * 111.00125 * 163.95344 * 19 18 16 21 21 C 1.46900 * 110.99665 * 287.90706 * 19 18 16 22 22 C 1.47012 * 111.00066 * 294.99746 * 12 2 1 23 23 H 1.09002 * 109.47441 * 65.67691 * 1 2 3 24 24 H 1.09000 * 109.47522 * 185.67958 * 1 2 3 25 25 H 1.09010 * 109.46970 * 305.67635 * 1 2 3 26 26 H 0.96996 * 120.00166 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.50792 * 302.32916 * 13 12 2 28 28 H 1.09000 * 109.50824 * 62.45873 * 13 12 2 29 29 H 1.08992 * 109.50655 * 183.21237 * 14 13 12 30 30 H 1.09000 * 109.50443 * 63.08426 * 14 13 12 31 31 H 1.08998 * 109.47282 * 57.42543 * 18 16 15 32 32 H 1.09004 * 109.47359 * 177.43054 * 18 16 15 33 33 H 1.08998 * 109.47325 * 64.75882 * 20 19 18 34 34 H 1.09003 * 109.47009 * 184.75885 * 20 19 18 35 35 H 1.09003 * 109.47451 * 304.76047 * 20 19 18 36 36 H 1.09002 * 109.47195 * 59.99815 * 21 19 18 37 37 H 1.08996 * 109.47123 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.47387 * 299.99832 * 21 19 18 39 39 H 1.09000 * 109.50541 * 297.54406 * 22 12 2 40 40 H 1.08998 * 109.50355 * 57.67220 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5779 -1.6375 -1.1338 6 6 1.7952 -0.1770 -2.4795 7 7 1.2548 1.0166 -2.5931 8 14 2.2416 -1.1496 -4.0106 9 1 1.0485 -1.8921 -4.4908 10 1 2.7051 -0.2188 -5.0708 11 1 3.3261 -2.1112 -3.6875 12 7 2.0196 -0.6925 1.1995 13 6 3.4746 -0.8932 1.1348 14 6 3.9329 -1.6687 2.3727 15 8 3.5360 -0.9577 3.5485 16 6 2.1250 -0.7451 3.6440 17 1 1.6132 -1.7068 3.6818 18 6 1.8129 0.0500 4.9133 19 7 2.2192 -0.7284 6.0911 20 6 2.2951 0.1240 7.2850 21 6 1.3120 -1.8627 6.3109 22 6 1.6484 0.0398 2.4190 23 1 -0.3634 0.4233 -0.9364 24 1 -0.3634 -1.0226 0.1017 25 1 -0.3633 0.5994 0.8349 26 1 1.0877 1.3917 -3.4718 27 1 3.7245 -1.4593 0.2375 28 1 3.9746 0.0749 1.1062 29 1 5.0179 -1.7702 2.3575 30 1 3.4741 -2.6575 2.3732 31 1 2.3594 0.9929 4.8950 32 1 0.7427 0.2511 4.9623 33 1 1.3007 0.4987 7.5277 34 1 2.6787 -0.4578 8.1231 35 1 2.9621 0.9638 7.0901 36 1 1.3281 -2.5153 5.4380 37 1 1.6358 -2.4222 7.1885 38 1 0.2991 -1.4925 6.4691 39 1 2.1193 1.0228 2.4108 40 1 0.5653 0.1546 2.4590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247658892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -30.993259 kcal Electronic energy + Delta-G solvation = -18559.328434 eV Core-core repulsion = 15795.451728 eV Total energy + Delta-G solvation = -2763.876705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.22469 -37.10840 -35.48326 -32.59530 -31.50876 -29.60206 -27.63073 -27.21416 -25.62173 -24.62450 -22.70583 -21.35464 -20.14798 -19.40083 -16.43865 -16.00873 -15.86193 -15.46728 -14.88345 -14.67498 -14.35211 -14.10900 -13.58005 -13.44187 -13.10421 -12.48153 -12.40950 -12.16739 -11.73530 -11.72720 -11.63653 -11.38323 -10.97467 -10.91417 -10.70695 -10.58978 -10.47654 -10.25263 -9.99968 -9.70211 -8.98565 -8.76364 -8.46674 -8.30501 -7.23789 -6.06249 -4.08576 3.29163 3.36245 3.39081 3.90378 4.19705 4.39086 4.86385 5.09581 5.16235 5.27312 5.31378 5.34154 5.49801 5.56881 5.57949 5.66069 5.78618 5.81019 5.85404 5.91602 5.96606 6.08250 6.14425 6.40578 6.59661 6.69877 6.77278 6.98066 7.01229 7.03385 7.09115 7.41141 7.63979 7.73851 7.78550 8.07270 8.22623 8.55481 8.98265 9.56054 11.02880 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045642 B = 0.005356 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.323857 B = 5226.295724 C = 5515.959387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.006 0.994 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.532 5.532 13 C 0.029 3.971 14 C 0.062 3.938 15 O -0.373 6.373 16 C 0.103 3.897 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.538 5.538 20 C 0.026 3.974 21 C 0.023 3.977 22 C 0.023 3.977 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.010 0.990 26 H 0.261 0.739 27 H 0.095 0.905 28 H 0.029 0.971 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -2.675 14.513 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.023 0.977 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.258 5.258 13 C -0.100 4.100 14 C -0.015 4.015 15 O -0.292 6.292 16 C 0.044 3.956 17 H 0.078 0.922 18 C -0.066 4.066 19 N -0.261 5.261 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.106 4.106 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.001 -3.119 14.435 14.802 hybrid contribution -0.496 0.646 -1.068 1.343 sum 0.506 -2.473 13.366 13.602 Atomic orbital electron populations 1.21725 0.97984 0.98775 0.99786 1.19267 0.91987 0.92587 0.85720 0.97659 1.21136 1.35554 1.08050 0.89954 0.91792 1.24938 0.95345 0.94719 0.99054 1.69964 1.44166 1.15136 1.23744 0.86541 0.78668 0.79855 0.82697 1.20676 1.21358 1.19821 1.62349 1.11534 1.49340 1.02529 1.22628 0.89393 0.99448 0.98505 1.22719 0.99133 0.94847 0.84786 1.87973 1.21962 1.77055 1.42161 1.22057 0.82931 0.97858 0.92746 0.92214 1.22157 0.98452 0.96803 0.89153 1.61865 1.50678 1.10119 1.03486 1.22375 0.99781 0.97290 0.92752 1.22440 0.93533 0.94206 1.02386 1.22679 1.00901 0.95530 0.91510 0.91130 0.94504 0.97144 0.92950 0.88658 0.95276 0.89497 0.93210 0.90203 0.93325 0.96024 0.91548 0.91397 0.91044 0.91615 0.95859 0.95181 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.84 37.15 0.33 -2.67 16 2 C 0.21 5.33 1.93 -68.87 -0.13 5.19 16 3 H 0.01 0.16 8.09 -51.93 -0.42 -0.26 16 4 C -0.51 -13.80 7.69 -34.44 -0.27 -14.06 16 5 H 0.06 1.72 6.31 -52.48 -0.33 1.39 16 6 C 0.06 1.68 5.19 -17.82 -0.09 1.59 16 7 N -0.89 -25.49 12.05 55.43 0.67 -24.83 16 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.53 -11.62 4.59 -227.72 -1.04 -12.67 16 13 C 0.03 0.59 5.29 -3.71 -0.02 0.57 16 14 C 0.06 1.07 7.01 37.21 0.26 1.33 16 15 O -0.37 -6.69 10.38 -35.23 -0.37 -7.05 16 16 C 0.10 1.69 2.83 -26.69 -0.08 1.62 16 17 H 0.06 1.00 6.68 -51.93 -0.35 0.65 16 18 C 0.06 0.86 4.66 -3.82 -0.02 0.85 16 19 N -0.54 -6.97 4.89 -251.26 -1.23 -8.19 16 20 C 0.03 0.27 9.58 60.06 0.58 0.85 16 21 C 0.02 0.25 9.38 60.06 0.56 0.82 16 22 C 0.02 0.44 4.71 -3.71 -0.02 0.42 16 23 H 0.07 1.85 6.69 -51.93 -0.35 1.50 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.01 0.21 6.76 -51.92 -0.35 -0.14 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.10 2.04 6.00 -51.93 -0.31 1.73 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 32 H 0.05 0.61 8.03 -51.93 -0.42 0.20 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 36 H 0.07 0.85 6.66 -51.93 -0.35 0.51 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.40 6.46 -51.93 -0.34 1.06 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -29.33 308.97 -8.20 -37.53 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.97 Total: -2.09 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 1.11 Total: -3.50 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -1.60 Total: -45.69 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.37 Total: -7.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.33 -8.20 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247658892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.536 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds