Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47130 * 2 1 4 4 C 1.50705 * 109.46983 * 239.99961 * 2 1 3 5 5 H 1.08007 * 119.99713 * 245.50448 * 4 2 1 6 6 C 1.37868 * 119.99999 * 65.49910 * 4 2 1 7 7 N 1.31519 * 120.00275 * 7.05299 * 6 4 2 8 8 Si 1.86800 * 120.00131 * 187.04829 * 6 4 2 9 9 H 1.48500 * 109.47312 * 94.98518 * 8 6 4 10 10 H 1.48504 * 109.47488 * 214.98764 * 8 6 4 11 11 H 1.48506 * 109.46935 * 334.98571 * 8 6 4 12 12 N 1.46901 * 109.47159 * 119.99902 * 2 1 3 13 13 C 1.47018 * 110.99901 * 171.36342 * 12 2 1 14 14 C 1.53099 * 109.25971 * 182.39180 * 13 12 2 15 15 O 1.43015 * 109.25889 * 303.15502 * 14 13 12 16 16 C 1.43018 * 113.74028 * 58.66253 * 15 14 13 17 17 H 1.09006 * 109.53695 * 61.29036 * 16 15 14 18 18 C 1.52995 * 109.50616 * 181.39769 * 16 15 14 19 19 N 1.46907 * 109.47347 * 297.42974 * 18 16 15 20 20 C 1.46893 * 111.00125 * 163.95344 * 19 18 16 21 21 C 1.46900 * 110.99665 * 287.90706 * 19 18 16 22 22 C 1.47012 * 111.00066 * 294.99746 * 12 2 1 23 23 H 1.09002 * 109.47441 * 65.67691 * 1 2 3 24 24 H 1.09000 * 109.47522 * 185.67958 * 1 2 3 25 25 H 1.09010 * 109.46970 * 305.67635 * 1 2 3 26 26 H 0.96996 * 120.00166 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.50792 * 302.32916 * 13 12 2 28 28 H 1.09000 * 109.50824 * 62.45873 * 13 12 2 29 29 H 1.08992 * 109.50655 * 183.21237 * 14 13 12 30 30 H 1.09000 * 109.50443 * 63.08426 * 14 13 12 31 31 H 1.08998 * 109.47282 * 57.42543 * 18 16 15 32 32 H 1.09004 * 109.47359 * 177.43054 * 18 16 15 33 33 H 1.08998 * 109.47325 * 64.75882 * 20 19 18 34 34 H 1.09003 * 109.47009 * 184.75885 * 20 19 18 35 35 H 1.09003 * 109.47451 * 304.76047 * 20 19 18 36 36 H 1.09002 * 109.47195 * 59.99815 * 21 19 18 37 37 H 1.08996 * 109.47123 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.47387 * 299.99832 * 21 19 18 39 39 H 1.09000 * 109.50541 * 297.54406 * 22 12 2 40 40 H 1.08998 * 109.50355 * 57.67220 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5779 -1.6375 -1.1338 6 6 1.7952 -0.1770 -2.4795 7 7 1.2548 1.0166 -2.5931 8 14 2.2416 -1.1496 -4.0106 9 1 1.0485 -1.8921 -4.4908 10 1 2.7051 -0.2188 -5.0708 11 1 3.3261 -2.1112 -3.6875 12 7 2.0196 -0.6925 1.1995 13 6 3.4746 -0.8932 1.1348 14 6 3.9329 -1.6687 2.3727 15 8 3.5360 -0.9577 3.5485 16 6 2.1250 -0.7451 3.6440 17 1 1.6132 -1.7068 3.6818 18 6 1.8129 0.0500 4.9133 19 7 2.2192 -0.7284 6.0911 20 6 2.2951 0.1240 7.2850 21 6 1.3120 -1.8627 6.3109 22 6 1.6484 0.0398 2.4190 23 1 -0.3634 0.4233 -0.9364 24 1 -0.3634 -1.0226 0.1017 25 1 -0.3633 0.5994 0.8349 26 1 1.0877 1.3917 -3.4718 27 1 3.7245 -1.4593 0.2375 28 1 3.9746 0.0749 1.1062 29 1 5.0179 -1.7702 2.3575 30 1 3.4741 -2.6575 2.3732 31 1 2.3594 0.9929 4.8950 32 1 0.7427 0.2511 4.9623 33 1 1.3007 0.4987 7.5277 34 1 2.6787 -0.4578 8.1231 35 1 2.9621 0.9638 7.0901 36 1 1.3281 -2.5153 5.4380 37 1 1.6358 -2.4222 7.1885 38 1 0.2991 -1.4925 6.4691 39 1 2.1193 1.0228 2.4108 40 1 0.5653 0.1546 2.4590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247658892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -52.372722 kcal Electronic energy + Delta-G solvation = -18560.255517 eV Core-core repulsion = 15795.451728 eV Total energy + Delta-G solvation = -2764.803788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68376 -38.24956 -37.11585 -34.56847 -32.86054 -31.47811 -28.65252 -28.42587 -27.48237 -26.23861 -24.07782 -22.73043 -21.60223 -21.11701 -18.44452 -17.51075 -17.33089 -16.60276 -16.34060 -15.93691 -15.72458 -15.65571 -15.17997 -14.85346 -14.71197 -14.23681 -13.62020 -13.30179 -13.23333 -12.94918 -12.87040 -12.68058 -12.62408 -12.56809 -12.39850 -12.31664 -12.10684 -11.98380 -11.95182 -11.17186 -10.87948 -10.58194 -10.35955 -9.22714 -9.06162 -8.16598 -6.25951 1.41590 1.43019 1.53165 2.40650 2.81420 2.95880 3.14738 3.30520 3.97256 4.06379 4.13961 4.23100 4.31531 4.38094 4.45782 4.49585 4.57294 4.64269 4.68003 4.76162 4.77895 4.80277 4.94441 4.98149 5.02612 5.04815 5.07056 5.12204 5.17156 5.42767 5.66723 5.70071 6.04255 6.13010 6.16029 6.26689 6.36115 6.64772 6.88434 7.42933 8.92535 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045642 B = 0.005356 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.323857 B = 5226.295724 C = 5515.959387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.037 1.037 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.535 5.535 13 C 0.030 3.970 14 C 0.072 3.928 15 O -0.381 6.381 16 C 0.109 3.891 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.557 5.557 20 C 0.027 3.973 21 C 0.023 3.977 22 C 0.025 3.975 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.082 0.918 28 H 0.010 0.990 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.017 0.983 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 -3.865 15.740 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.019 1.019 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.261 5.261 13 C -0.099 4.099 14 C -0.005 4.005 15 O -0.300 6.300 16 C 0.051 3.949 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.281 5.281 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.104 4.104 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.028 0.972 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.081 -4.319 15.690 16.309 hybrid contribution -0.510 1.041 -1.394 1.813 sum 0.571 -3.278 14.296 14.678 Atomic orbital electron populations 1.21541 0.97056 0.99183 0.99299 1.19088 0.92713 0.90409 0.87079 1.01909 1.21409 1.35598 1.08050 0.90975 0.91911 1.25726 0.95294 0.95521 1.02032 1.70087 1.45163 1.16534 1.24424 0.85521 0.78634 0.78507 0.78861 1.20094 1.21148 1.18979 1.62322 1.12411 1.48969 1.02354 1.22644 0.88486 0.98784 0.99947 1.22715 1.00701 0.94256 0.82863 1.87978 1.22801 1.77121 1.42053 1.22082 0.82185 0.97881 0.92764 0.91979 1.22047 0.99226 0.96177 0.88527 1.61830 1.51442 1.10855 1.03988 1.22412 1.00480 0.97157 0.92031 1.22460 0.93878 0.93631 1.02535 1.22758 1.01272 0.95084 0.91335 0.93670 0.93965 0.95024 0.92902 0.89986 0.97183 0.86918 0.92400 0.90578 0.91940 0.94966 0.90247 0.91537 0.92129 0.90142 0.94892 0.96510 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.84 71.98 0.64 -4.82 16 2 C 0.21 11.08 1.93 44.17 0.09 11.16 16 3 H -0.04 -2.17 8.09 -2.39 -0.02 -2.19 16 4 C -0.52 -28.72 7.69 25.60 0.20 -28.52 16 5 H 0.06 3.40 6.31 -2.91 -0.02 3.38 16 6 C 0.01 0.73 5.19 84.65 0.44 1.17 16 7 N -0.92 -53.77 12.05 21.44 0.26 -53.52 16 8 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 N -0.54 -23.48 4.59 -874.37 -4.01 -27.49 16 13 C 0.03 1.22 5.29 86.31 0.46 1.68 16 14 C 0.07 2.35 7.01 72.02 0.50 2.86 16 15 O -0.38 -13.06 10.38 -148.98 -1.55 -14.61 16 16 C 0.11 3.45 2.83 30.62 0.09 3.54 16 17 H 0.06 1.96 6.68 -2.38 -0.02 1.94 16 18 C 0.07 1.77 4.66 86.30 0.40 2.17 16 19 N -0.56 -13.11 4.89 -948.86 -4.64 -17.75 16 20 C 0.03 0.49 9.58 127.69 1.22 1.71 16 21 C 0.02 0.45 9.38 127.69 1.20 1.65 16 22 C 0.02 0.92 4.71 86.31 0.41 1.33 16 23 H 0.04 2.40 6.69 -2.39 -0.02 2.38 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 1.34 6.76 -2.38 -0.02 1.33 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.08 3.54 6.00 -2.39 -0.01 3.53 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 32 H 0.06 1.43 8.03 -2.38 -0.02 1.41 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.21 7.98 -2.39 -0.02 1.19 16 36 H 0.06 1.32 6.66 -2.39 -0.02 1.30 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.03 0.58 8.11 -2.39 -0.02 0.57 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 2.97 6.46 -2.39 -0.02 2.95 16 Total: -1.00 -62.64 308.97 -1.29 -63.93 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.99 Total: 9.95 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.63 Total: -6.07 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -8.39 Total: -98.76 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.55 Total: -14.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -62.64 -1.29 -63.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247658892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.557 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds