Wall clock time and date at job start Mon Mar 30 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46942 * 2 1 4 4 C 1.50699 * 109.46921 * 120.00251 * 2 1 3 5 5 H 1.07993 * 120.00184 * 120.00475 * 4 2 1 6 6 C 1.37878 * 119.99862 * 299.99685 * 4 2 1 7 7 N 1.31515 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47218 * 89.99685 * 8 6 4 10 10 H 1.48502 * 109.47093 * 210.00264 * 8 6 4 11 11 H 1.48500 * 109.46867 * 329.99951 * 8 6 4 12 12 N 1.46893 * 109.46811 * 240.00224 * 2 1 3 13 13 C 1.47018 * 111.00205 * 306.04180 * 12 2 1 14 14 C 1.53092 * 109.25948 * 182.39406 * 13 12 2 15 15 O 1.43014 * 109.26113 * 303.15316 * 14 13 12 16 16 C 1.43026 * 113.73715 * 58.67379 * 15 14 13 17 17 H 1.08988 * 109.50934 * 61.30305 * 16 15 14 18 18 C 1.52998 * 109.50613 * 181.39706 * 16 15 14 19 19 N 1.46895 * 109.47008 * 298.28216 * 18 16 15 20 20 C 1.46903 * 111.00093 * 164.21743 * 19 18 16 21 21 C 1.46895 * 111.00243 * 288.17372 * 19 18 16 22 22 C 1.47011 * 111.00339 * 69.68109 * 12 2 1 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46828 * 299.99767 * 1 2 3 25 25 H 1.09003 * 109.47385 * 59.99835 * 1 2 3 26 26 H 0.97000 * 119.99902 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.50475 * 302.33416 * 13 12 2 28 28 H 1.09000 * 109.50494 * 62.41882 * 13 12 2 29 29 H 1.09002 * 109.50656 * 63.08827 * 14 13 12 30 30 H 1.09001 * 109.50651 * 183.21944 * 14 13 12 31 31 H 1.09005 * 109.47547 * 58.28182 * 18 16 15 32 32 H 1.08998 * 109.46824 * 178.28106 * 18 16 15 33 33 H 1.08999 * 109.46712 * 61.45924 * 20 19 18 34 34 H 1.09008 * 109.46986 * 181.45211 * 20 19 18 35 35 H 1.08996 * 109.47331 * 301.45255 * 20 19 18 36 36 H 1.09008 * 109.47104 * 59.99954 * 21 19 18 37 37 H 1.08998 * 109.47358 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.47164 * 300.00139 * 21 19 18 39 39 H 1.08994 * 109.50905 * 297.54124 * 22 12 2 40 40 H 1.09003 * 109.50749 * 57.66974 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6305 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4878 -2.5654 3.7122 12 7 2.0196 -0.6924 -1.1994 13 6 1.4338 -2.0365 -1.3079 14 6 2.0150 -2.7431 -2.5354 15 8 1.7668 -1.9488 -3.6985 16 6 2.3241 -0.6336 -3.6272 17 1 3.4075 -0.7020 -3.5301 18 6 1.9730 0.1397 -4.8998 19 7 2.5584 -0.5400 -6.0630 20 6 1.9503 -0.0633 -7.3124 21 6 4.0176 -0.3737 -6.0907 22 6 1.7459 0.0944 -2.4107 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7090 1.1614 3.4844 27 1 1.6704 -2.6100 -0.4117 28 1 0.3520 -1.9546 -1.4126 29 1 3.0895 -2.8729 -2.4058 30 1 1.5415 -3.7178 -2.6524 31 1 0.8895 0.1830 -5.0115 32 1 2.3719 1.1518 -4.8316 33 1 2.1415 1.0038 -7.4254 34 1 2.3836 -0.6013 -8.1557 35 1 0.8750 -0.2388 -7.2833 36 1 4.4490 -0.7983 -5.1841 37 1 4.4253 -0.8863 -6.9620 38 1 4.2614 0.6872 -6.1467 39 1 0.6692 0.2104 -2.5338 40 1 2.2103 1.0763 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247658895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:08 Heat of formation + Delta-G solvation = -29.063336 kcal Electronic energy + Delta-G solvation = -18602.761228 eV Core-core repulsion = 15838.968211 eV Total energy + Delta-G solvation = -2763.793017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.28936 -37.16075 -35.58021 -32.60117 -31.50380 -29.20670 -27.63153 -27.30862 -25.38758 -24.66185 -23.02120 -21.62686 -20.37348 -18.99331 -16.38621 -16.02692 -15.62814 -15.47591 -14.86534 -14.67817 -14.41646 -14.09943 -13.79139 -13.51726 -12.81500 -12.58111 -12.41265 -12.18469 -11.75739 -11.72147 -11.64407 -11.30971 -11.04482 -10.79376 -10.77892 -10.67246 -10.52349 -10.18243 -10.00895 -9.67037 -9.07169 -8.78024 -8.39427 -8.30325 -7.19854 -6.02243 -4.06193 3.30602 3.36936 3.40227 3.90243 4.19083 4.40246 4.88180 5.09542 5.16733 5.29667 5.31468 5.34101 5.48954 5.56895 5.57616 5.65828 5.77224 5.80007 5.84132 5.91751 5.95601 6.07938 6.13186 6.39761 6.57809 6.61227 6.78601 6.85022 7.01305 7.03572 7.11041 7.41364 7.68207 7.72751 7.81528 8.09413 8.34187 8.55770 8.99384 9.58941 11.04889 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044910 B = 0.005289 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.324075 B = 5292.995206 C = 5444.575952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.025 3.975 14 C 0.062 3.938 15 O -0.372 6.372 16 C 0.102 3.898 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.538 5.538 20 C 0.026 3.974 21 C 0.023 3.977 22 C 0.023 3.977 23 H 0.031 0.969 24 H 0.088 0.912 25 H 0.007 0.993 26 H 0.260 0.740 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -1.776 -14.467 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.103 4.103 14 C -0.015 4.015 15 O -0.291 6.291 16 C 0.044 3.956 17 H 0.078 0.922 18 C -0.065 4.065 19 N -0.261 5.261 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.107 4.107 23 H 0.050 0.950 24 H 0.107 0.893 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.377 -2.278 -14.395 14.766 hybrid contribution -0.331 0.719 1.057 1.320 sum 2.046 -1.559 -13.338 13.584 Atomic orbital electron populations 1.22391 1.00740 0.99444 1.00468 1.19315 0.89872 0.94431 0.85887 0.94366 1.21083 1.30549 1.12523 0.89594 0.91985 1.24931 0.95199 0.95147 0.99015 1.69887 1.37035 1.23088 1.23414 0.86509 0.78499 0.79997 0.82457 1.20698 1.21370 1.19923 1.62564 1.58498 1.01989 1.02238 1.22642 0.97030 0.92305 0.98369 1.22701 0.99822 0.93759 0.85204 1.87977 1.77599 1.24424 1.39061 1.22066 0.97212 0.83587 0.92762 0.92205 1.22152 1.00458 0.94508 0.89419 1.61863 1.04501 1.57544 1.02225 1.22375 1.00342 0.97505 0.91979 1.22442 0.88115 0.99140 1.02875 1.22650 0.98844 0.97692 0.91465 0.94987 0.89332 0.97428 0.93000 0.89290 0.94644 0.93191 0.89542 0.90231 0.93314 0.96023 0.91570 0.91390 0.91024 0.91623 0.95872 0.94694 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.21 37.16 0.31 -3.88 16 2 C 0.21 5.32 2.31 -68.87 -0.16 5.16 16 3 H 0.04 1.06 8.04 -51.93 -0.42 0.64 16 4 C -0.50 -13.58 7.94 -34.44 -0.27 -13.85 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.53 -11.49 4.67 -227.72 -1.06 -12.55 16 13 C 0.03 0.50 4.82 -3.71 -0.02 0.48 16 14 C 0.06 1.06 7.01 37.20 0.26 1.32 16 15 O -0.37 -6.61 10.37 -35.23 -0.37 -6.98 16 16 C 0.10 1.68 2.81 -26.68 -0.08 1.60 16 17 H 0.06 1.00 6.70 -51.94 -0.35 0.65 16 18 C 0.06 0.86 4.66 -3.83 -0.02 0.85 16 19 N -0.54 -6.95 4.87 -251.26 -1.22 -8.18 16 20 C 0.03 0.27 9.55 60.07 0.57 0.84 16 21 C 0.02 0.25 9.38 60.06 0.56 0.82 16 22 C 0.02 0.43 4.67 -3.71 -0.02 0.41 16 23 H 0.03 0.76 6.38 -51.93 -0.33 0.43 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.15 6.73 -51.93 -0.35 -0.20 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.09 1.87 6.80 -51.93 -0.35 1.52 16 28 H 0.04 0.73 6.37 -51.93 -0.33 0.40 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 32 H 0.05 0.61 8.03 -51.93 -0.42 0.20 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 36 H 0.07 0.86 6.67 -51.92 -0.35 0.51 16 37 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 16 39 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 40 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.06 305.57 -8.24 -37.30 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.85 Total: -0.92 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 1.05 Total: -4.75 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -1.66 Total: -45.50 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.37 Total: -6.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.06 -8.24 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247658895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds