Wall clock time and date at job start Mon Mar 30 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46942 * 2 1 4 4 C 1.50699 * 109.46921 * 120.00251 * 2 1 3 5 5 H 1.07993 * 120.00184 * 120.00475 * 4 2 1 6 6 C 1.37878 * 119.99862 * 299.99685 * 4 2 1 7 7 N 1.31515 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47218 * 89.99685 * 8 6 4 10 10 H 1.48502 * 109.47093 * 210.00264 * 8 6 4 11 11 H 1.48500 * 109.46867 * 329.99951 * 8 6 4 12 12 N 1.46893 * 109.46811 * 240.00224 * 2 1 3 13 13 C 1.47018 * 111.00205 * 306.04180 * 12 2 1 14 14 C 1.53092 * 109.25948 * 182.39406 * 13 12 2 15 15 O 1.43014 * 109.26113 * 303.15316 * 14 13 12 16 16 C 1.43026 * 113.73715 * 58.67379 * 15 14 13 17 17 H 1.08988 * 109.50934 * 61.30305 * 16 15 14 18 18 C 1.52998 * 109.50613 * 181.39706 * 16 15 14 19 19 N 1.46895 * 109.47008 * 298.28216 * 18 16 15 20 20 C 1.46903 * 111.00093 * 164.21743 * 19 18 16 21 21 C 1.46895 * 111.00243 * 288.17372 * 19 18 16 22 22 C 1.47011 * 111.00339 * 69.68109 * 12 2 1 23 23 H 1.09000 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46828 * 299.99767 * 1 2 3 25 25 H 1.09003 * 109.47385 * 59.99835 * 1 2 3 26 26 H 0.97000 * 119.99902 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.50475 * 302.33416 * 13 12 2 28 28 H 1.09000 * 109.50494 * 62.41882 * 13 12 2 29 29 H 1.09002 * 109.50656 * 63.08827 * 14 13 12 30 30 H 1.09001 * 109.50651 * 183.21944 * 14 13 12 31 31 H 1.09005 * 109.47547 * 58.28182 * 18 16 15 32 32 H 1.08998 * 109.46824 * 178.28106 * 18 16 15 33 33 H 1.08999 * 109.46712 * 61.45924 * 20 19 18 34 34 H 1.09008 * 109.46986 * 181.45211 * 20 19 18 35 35 H 1.08996 * 109.47331 * 301.45255 * 20 19 18 36 36 H 1.09008 * 109.47104 * 59.99954 * 21 19 18 37 37 H 1.08998 * 109.47358 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.47164 * 300.00139 * 21 19 18 39 39 H 1.08994 * 109.50905 * 297.54124 * 22 12 2 40 40 H 1.09003 * 109.50749 * 57.66974 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6305 -0.5442 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4878 -2.5654 3.7122 12 7 2.0196 -0.6924 -1.1994 13 6 1.4338 -2.0365 -1.3079 14 6 2.0150 -2.7431 -2.5354 15 8 1.7668 -1.9488 -3.6985 16 6 2.3241 -0.6336 -3.6272 17 1 3.4075 -0.7020 -3.5301 18 6 1.9730 0.1397 -4.8998 19 7 2.5584 -0.5400 -6.0630 20 6 1.9503 -0.0633 -7.3124 21 6 4.0176 -0.3737 -6.0907 22 6 1.7459 0.0944 -2.4107 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7090 1.1614 3.4844 27 1 1.6704 -2.6100 -0.4117 28 1 0.3520 -1.9546 -1.4126 29 1 3.0895 -2.8729 -2.4058 30 1 1.5415 -3.7178 -2.6524 31 1 0.8895 0.1830 -5.0115 32 1 2.3719 1.1518 -4.8316 33 1 2.1415 1.0038 -7.4254 34 1 2.3836 -0.6013 -8.1557 35 1 0.8750 -0.2388 -7.2833 36 1 4.4490 -0.7983 -5.1841 37 1 4.4253 -0.8863 -6.9620 38 1 4.2614 0.6872 -6.1467 39 1 0.6692 0.2104 -2.5338 40 1 2.2103 1.0763 -2.3196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247658895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:07 Heat of formation + Delta-G solvation = -50.131174 kcal Electronic energy + Delta-G solvation = -18603.674798 eV Core-core repulsion = 15838.968211 eV Total energy + Delta-G solvation = -2764.706587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75022 -38.31951 -37.16081 -34.57432 -32.83938 -31.06340 -28.70344 -28.43253 -27.40635 -26.20312 -24.40291 -23.03454 -21.70763 -20.69636 -18.31258 -17.40730 -17.25917 -16.62588 -16.34502 -15.94550 -15.79881 -15.61168 -15.29041 -14.91640 -14.50903 -14.25008 -13.69187 -13.29139 -13.18341 -12.95968 -12.88367 -12.70737 -12.63751 -12.56949 -12.44841 -12.27231 -12.12451 -12.00174 -11.85401 -11.16912 -10.98675 -10.50516 -10.37618 -9.22847 -8.95340 -8.11982 -6.23244 1.43153 1.43690 1.54031 2.42069 2.81731 2.97076 3.17240 3.34186 3.97555 4.06941 4.13866 4.23283 4.32936 4.37933 4.45797 4.49960 4.56346 4.65778 4.69214 4.70625 4.77454 4.79217 4.84836 4.99332 5.02023 5.04830 5.07244 5.08456 5.17492 5.46544 5.66676 5.74640 6.04164 6.14458 6.16713 6.35946 6.40989 6.65349 6.88605 7.46040 8.94338 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044910 B = 0.005289 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.324075 B = 5292.995206 C = 5444.575952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.538 5.538 13 C 0.028 3.972 14 C 0.070 3.930 15 O -0.378 6.378 16 C 0.109 3.891 17 H 0.058 0.942 18 C 0.069 3.931 19 N -0.557 5.557 20 C 0.027 3.973 21 C 0.023 3.977 22 C 0.025 3.975 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -2.560 -15.604 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.025 0.975 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.262 5.262 13 C -0.100 4.100 14 C -0.007 4.007 15 O -0.297 6.297 16 C 0.051 3.949 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.281 5.281 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.104 4.104 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.914 -3.068 -15.559 16.124 hybrid contribution -0.490 0.983 1.360 1.748 sum 2.424 -2.085 -14.198 14.554 Atomic orbital electron populations 1.22186 1.00343 0.99172 0.99845 1.19079 0.90030 0.92915 0.87158 0.97518 1.21327 1.30647 1.12528 0.90736 0.92476 1.25700 0.95321 0.95803 1.01868 1.70012 1.37853 1.24227 1.24060 0.85513 0.77930 0.79114 0.78802 1.20285 1.21003 1.19195 1.62465 1.58660 1.02879 1.02244 1.22643 0.96556 0.91417 0.99416 1.22715 1.00103 0.94329 0.83558 1.87983 1.77766 1.24906 1.39059 1.22068 0.96798 0.83084 0.92967 0.92369 1.22042 1.00542 0.94615 0.88735 1.61831 1.05443 1.58033 1.02748 1.22414 1.00277 0.98276 0.91116 1.22456 0.87213 0.99854 1.02980 1.22710 0.98621 0.97864 0.91244 0.94933 0.91863 0.95998 0.92947 0.90709 0.95559 0.92820 0.86822 0.90374 0.92115 0.95055 0.90225 0.91432 0.92235 0.90111 0.94986 0.95362 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.21 71.98 0.59 -7.15 16 2 C 0.22 11.05 2.31 44.17 0.10 11.15 16 3 H 0.01 0.39 8.04 -2.39 -0.02 0.37 16 4 C -0.51 -28.30 7.94 25.60 0.20 -28.09 16 5 H 0.06 3.13 7.12 -2.91 -0.02 3.11 16 6 C 0.01 0.64 5.30 84.65 0.45 1.08 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.54 -23.47 4.67 -874.38 -4.08 -27.55 16 13 C 0.03 1.11 4.82 86.31 0.42 1.53 16 14 C 0.07 2.26 7.01 72.01 0.50 2.77 16 15 O -0.38 -12.78 10.37 -148.98 -1.54 -14.32 16 16 C 0.11 3.45 2.81 30.63 0.09 3.53 16 17 H 0.06 1.87 6.70 -2.39 -0.02 1.86 16 18 C 0.07 1.78 4.66 86.30 0.40 2.18 16 19 N -0.56 -13.13 4.87 -948.86 -4.62 -17.75 16 20 C 0.03 0.48 9.55 127.69 1.22 1.70 16 21 C 0.02 0.46 9.38 127.69 1.20 1.66 16 22 C 0.02 0.92 4.67 86.32 0.40 1.32 16 23 H 0.03 1.56 6.38 -2.39 -0.02 1.54 16 24 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 25 H 0.02 0.97 6.73 -2.39 -0.02 0.96 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.07 3.14 6.80 -2.39 -0.02 3.13 16 28 H 0.03 1.08 6.37 -2.39 -0.02 1.06 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.08 2.02 7.94 -2.38 -0.02 2.00 16 32 H 0.06 1.41 8.03 -2.39 -0.02 1.39 16 33 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 36 H 0.06 1.33 6.67 -2.38 -0.02 1.32 16 37 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.03 0.58 8.11 -2.39 -0.02 0.56 16 39 H 0.03 1.08 6.71 -2.39 -0.02 1.07 16 40 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 Total: -1.00 -61.35 305.57 -1.42 -62.76 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.99 Total: 12.34 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.57 Total: -8.31 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -8.46 Total: -98.08 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.54 Total: -14.32 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -61.35 -1.42 -62.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247658895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.633 kcal (2) G-P(sol) polarization free energy of solvation -61.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds