Wall clock time and date at job start Mon Mar 30 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.50693 * 109.47343 * 239.99772 * 2 1 3 5 5 H 1.07999 * 120.00342 * 245.52278 * 4 2 1 6 6 C 1.37876 * 119.99923 * 65.51347 * 4 2 1 7 7 N 1.31517 * 119.99955 * 198.92431 * 6 4 2 8 8 Si 1.86795 * 120.00087 * 18.65567 * 6 4 2 9 9 H 1.48500 * 109.47626 * 180.27142 * 8 6 4 10 10 H 1.48500 * 109.46927 * 300.27164 * 8 6 4 11 11 H 1.48498 * 109.47384 * 60.26933 * 8 6 4 12 12 N 1.46903 * 109.47065 * 119.99798 * 2 1 3 13 13 C 1.46956 * 110.99976 * 58.79549 * 12 2 1 14 14 C 1.53051 * 109.36258 * 176.81288 * 13 12 2 15 15 N 1.46956 * 109.36802 * 58.40426 * 14 13 12 16 16 C 1.46895 * 110.99955 * 176.81037 * 15 14 13 17 17 C 1.52994 * 109.47168 * 286.66131 * 16 15 14 18 18 O 1.42895 * 109.47308 * 66.75380 * 17 16 15 19 19 C 1.46964 * 110.87802 * 300.67958 * 15 14 13 20 20 H 1.08996 * 109.50624 * 299.34336 * 19 15 14 21 21 C 1.52991 * 109.48618 * 179.28626 * 19 15 14 22 22 C 1.46961 * 110.99860 * 294.99806 * 12 2 1 23 23 H 1.08996 * 109.47519 * 175.02288 * 1 2 3 24 24 H 1.09008 * 109.47388 * 295.01963 * 1 2 3 25 25 H 1.09003 * 109.47020 * 55.01653 * 1 2 3 26 26 H 0.96995 * 120.00167 * 354.68409 * 7 6 4 27 27 H 1.08994 * 109.49110 * 296.77858 * 13 12 2 28 28 H 1.09005 * 109.48813 * 56.84678 * 13 12 2 29 29 H 1.09007 * 109.48721 * 298.43614 * 14 13 12 30 30 H 1.09006 * 109.50410 * 178.38664 * 14 13 12 31 31 H 1.08997 * 109.47413 * 46.66505 * 16 15 14 32 32 H 1.09008 * 109.46689 * 166.66482 * 16 15 14 33 33 H 1.09002 * 109.47239 * 186.75130 * 17 16 15 34 34 H 1.09001 * 109.47415 * 306.74638 * 17 16 15 35 35 H 0.96701 * 114.00288 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47396 * 300.10846 * 21 19 15 37 37 H 1.08997 * 109.47335 * 60.10781 * 21 19 15 38 38 H 1.08997 * 109.47169 * 180.11125 * 21 19 15 39 39 H 1.08996 * 109.49023 * 303.15907 * 22 12 2 40 40 H 1.08999 * 109.48762 * 63.20113 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5777 -1.6376 -1.1338 6 6 1.7955 -0.1769 -2.4794 7 7 1.8872 -0.9382 -3.5479 8 14 1.3372 1.6256 -2.6536 9 1 1.1300 1.9474 -4.0884 10 1 0.0855 1.8930 -1.9006 11 1 2.4315 2.4695 -2.1101 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0754 1.2480 14 6 2.1200 -2.7847 2.4668 15 7 1.7489 -2.0527 3.6859 16 6 2.2385 -2.7452 4.8853 17 6 1.3925 -3.9956 5.1333 18 8 1.6129 -4.9364 4.0807 19 6 2.2435 -0.6697 3.6374 20 1 3.3307 -0.6744 3.5604 21 6 1.8250 0.0669 4.9113 22 6 1.6485 0.0396 2.4186 23 1 -0.3634 -1.0237 -0.0892 24 1 -0.3634 0.4347 0.9313 25 1 -0.3633 0.5892 -0.8420 26 1 2.1959 -1.8541 -3.4658 27 1 0.4378 -2.0703 1.3251 28 1 1.8231 -2.6003 0.3403 29 1 3.2059 -2.8138 2.3764 30 1 1.7322 -3.8020 2.5211 31 1 3.2793 -3.0339 4.7387 32 1 2.1637 -2.0794 5.7451 33 1 1.6762 -4.4431 6.0859 34 1 0.3379 -3.7212 5.1607 35 1 1.1069 -5.7554 4.1727 36 1 0.7377 0.0709 4.9883 37 1 2.2488 -0.4384 5.7791 38 1 2.1903 1.0932 4.8742 39 1 2.0366 1.0567 2.3643 40 1 0.5627 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249600261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:38 Heat of formation + Delta-G solvation = -31.368246 kcal Electronic energy + Delta-G solvation = -18891.061025 eV Core-core repulsion = 16127.168059 eV Total energy + Delta-G solvation = -2763.892966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30851 -37.09021 -35.54811 -32.58549 -32.01401 -30.48071 -28.38553 -26.81631 -25.14839 -24.07316 -22.11711 -21.54095 -19.73742 -18.75083 -17.61349 -17.14941 -15.91481 -15.16060 -14.87135 -14.75380 -14.36981 -13.84485 -13.39229 -13.15732 -12.95396 -12.73338 -12.46087 -11.92666 -11.79415 -11.78521 -11.41511 -11.26602 -11.11487 -11.06199 -10.69879 -10.36014 -10.23323 -10.05872 -9.86860 -9.65510 -9.44364 -8.87067 -8.07375 -8.03363 -7.20054 -6.39120 -3.95849 3.41309 3.47391 3.64144 4.07642 4.24882 4.54316 4.84334 5.02874 5.15847 5.25049 5.30589 5.35276 5.46927 5.48985 5.63375 5.80955 5.84406 5.94398 5.98641 6.08158 6.12990 6.23253 6.36564 6.38356 6.51683 6.58930 6.64974 6.80806 6.83205 7.05871 7.33921 7.36354 7.46961 7.60570 7.83777 8.16894 8.41332 8.53355 9.05497 9.70673 11.01783 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034302 B = 0.006571 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.085711 B = 4260.032339 C = 4811.984498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.187 3.813 3 H 0.029 0.971 4 C -0.586 4.586 5 H 0.063 0.937 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 1.045 2.955 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.526 5.526 13 C 0.067 3.933 14 C 0.053 3.947 15 N -0.530 5.530 16 C 0.046 3.954 17 C 0.082 3.918 18 O -0.565 6.565 19 C 0.081 3.919 20 H 0.044 0.956 21 C -0.146 4.146 22 C 0.058 3.942 23 H 0.048 0.952 24 H 0.023 0.977 25 H 0.055 0.945 26 H 0.266 0.734 27 H 0.031 0.969 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.372 0.628 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -2.602 18.189 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.080 3.920 3 H 0.047 0.953 4 C -0.624 4.624 5 H 0.081 0.919 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.874 3.126 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.210 1.210 12 N -0.249 5.249 13 C -0.061 4.061 14 C -0.075 4.075 15 N -0.256 5.256 16 C -0.082 4.082 17 C 0.004 3.996 18 O -0.371 6.371 19 C -0.028 4.028 20 H 0.062 0.938 21 C -0.203 4.203 22 C -0.071 4.071 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.219 0.781 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.000 -0.972 16.848 16.994 hybrid contribution 0.103 -1.565 1.370 2.082 sum -1.896 -2.537 18.218 18.491 Atomic orbital electron populations 1.22846 1.01371 1.01060 0.99091 1.19588 0.89183 0.94546 0.88713 0.95348 1.21950 1.39778 1.10219 0.90429 0.91908 1.25665 0.94742 1.04984 0.92149 1.70864 1.42439 1.09277 1.31727 0.84059 0.76945 0.75746 0.75858 1.21259 1.20256 1.21017 1.62400 1.59123 1.01876 1.01513 1.22040 0.96882 0.90162 0.97048 1.22551 0.98207 0.98386 0.88314 1.62233 1.59343 1.01738 1.02295 1.22258 0.96920 0.94245 0.94774 1.22211 0.99365 0.89190 0.88812 1.86571 1.71200 1.30608 1.48689 1.21682 0.97452 0.88491 0.95152 0.93820 1.21908 1.02099 0.99793 0.96542 1.22139 0.98007 0.96938 0.89994 0.93297 0.95803 0.92587 0.92335 0.95111 0.89694 0.95221 0.88150 0.94406 0.89386 0.93899 0.92925 0.78119 0.92000 0.92774 0.92197 0.91458 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 8.12 37.15 0.30 -3.95 16 2 C 0.19 4.62 1.93 -68.87 -0.13 4.49 16 3 H 0.03 0.72 6.75 -51.93 -0.35 0.37 16 4 C -0.59 -16.70 8.27 -34.44 -0.28 -16.99 16 5 H 0.06 1.94 6.81 -52.49 -0.36 1.58 16 6 C 0.03 0.86 5.33 -17.82 -0.10 0.76 16 7 N -0.91 -28.18 13.70 55.43 0.76 -27.42 16 8 Si 1.04 25.61 26.46 -169.99 -4.50 21.11 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.27 5.54 56.52 0.31 -5.96 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.53 -11.65 4.69 -227.88 -1.07 -12.72 16 13 C 0.07 1.42 4.86 -3.77 -0.02 1.40 16 14 C 0.05 0.95 5.28 -3.77 -0.02 0.93 16 15 N -0.53 -8.31 4.47 -226.49 -1.01 -9.33 16 16 C 0.05 0.58 5.37 -3.83 -0.02 0.56 16 17 C 0.08 0.87 7.34 37.15 0.27 1.15 16 18 O -0.56 -6.61 10.64 -35.23 -0.37 -6.98 16 19 C 0.08 1.27 2.56 -67.66 -0.17 1.10 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.15 -1.75 8.93 37.15 0.33 -1.42 16 22 C 0.06 1.08 4.54 -3.76 -0.02 1.06 16 23 H 0.05 1.14 6.74 -51.93 -0.35 0.79 16 24 H 0.02 0.48 6.37 -51.92 -0.33 0.15 16 25 H 0.06 1.31 4.88 -51.93 -0.25 1.06 16 26 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 27 H 0.03 0.66 6.58 -51.93 -0.34 0.32 16 28 H 0.08 2.00 6.35 -51.93 -0.33 1.67 16 29 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.10 1.74 5.22 -51.93 -0.27 1.47 16 31 H 0.04 0.51 8.03 -51.93 -0.42 0.09 16 32 H 0.09 0.93 5.46 -51.92 -0.28 0.65 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.37 2.64 9.12 45.56 0.42 3.06 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.56 6.02 -51.93 -0.31 0.24 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 40 H 0.04 0.67 6.49 -51.93 -0.34 0.33 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -31.80 292.77 -7.36 -39.16 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.72 Total: 2.69 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 0.14 Total: -10.92 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.32 Total: -49.46 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.37 Total: -6.98 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.50 Total: 21.11 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.80 -7.36 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249600261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.788 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds