Wall clock time and date at job start Mon Mar 30 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.50693 * 109.47343 * 239.99772 * 2 1 3 5 5 H 1.07999 * 120.00342 * 245.52278 * 4 2 1 6 6 C 1.37876 * 119.99923 * 65.51347 * 4 2 1 7 7 N 1.31517 * 119.99955 * 198.92431 * 6 4 2 8 8 Si 1.86795 * 120.00087 * 18.65567 * 6 4 2 9 9 H 1.48500 * 109.47626 * 180.27142 * 8 6 4 10 10 H 1.48500 * 109.46927 * 300.27164 * 8 6 4 11 11 H 1.48498 * 109.47384 * 60.26933 * 8 6 4 12 12 N 1.46903 * 109.47065 * 119.99798 * 2 1 3 13 13 C 1.46956 * 110.99976 * 58.79549 * 12 2 1 14 14 C 1.53051 * 109.36258 * 176.81288 * 13 12 2 15 15 N 1.46956 * 109.36802 * 58.40426 * 14 13 12 16 16 C 1.46895 * 110.99955 * 176.81037 * 15 14 13 17 17 C 1.52994 * 109.47168 * 286.66131 * 16 15 14 18 18 O 1.42895 * 109.47308 * 66.75380 * 17 16 15 19 19 C 1.46964 * 110.87802 * 300.67958 * 15 14 13 20 20 H 1.08996 * 109.50624 * 299.34336 * 19 15 14 21 21 C 1.52991 * 109.48618 * 179.28626 * 19 15 14 22 22 C 1.46961 * 110.99860 * 294.99806 * 12 2 1 23 23 H 1.08996 * 109.47519 * 175.02288 * 1 2 3 24 24 H 1.09008 * 109.47388 * 295.01963 * 1 2 3 25 25 H 1.09003 * 109.47020 * 55.01653 * 1 2 3 26 26 H 0.96995 * 120.00167 * 354.68409 * 7 6 4 27 27 H 1.08994 * 109.49110 * 296.77858 * 13 12 2 28 28 H 1.09005 * 109.48813 * 56.84678 * 13 12 2 29 29 H 1.09007 * 109.48721 * 298.43614 * 14 13 12 30 30 H 1.09006 * 109.50410 * 178.38664 * 14 13 12 31 31 H 1.08997 * 109.47413 * 46.66505 * 16 15 14 32 32 H 1.09008 * 109.46689 * 166.66482 * 16 15 14 33 33 H 1.09002 * 109.47239 * 186.75130 * 17 16 15 34 34 H 1.09001 * 109.47415 * 306.74638 * 17 16 15 35 35 H 0.96701 * 114.00288 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47396 * 300.10846 * 21 19 15 37 37 H 1.08997 * 109.47335 * 60.10781 * 21 19 15 38 38 H 1.08997 * 109.47169 * 180.11125 * 21 19 15 39 39 H 1.08996 * 109.49023 * 303.15907 * 22 12 2 40 40 H 1.08999 * 109.48762 * 63.20113 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5777 -1.6376 -1.1338 6 6 1.7955 -0.1769 -2.4794 7 7 1.8872 -0.9382 -3.5479 8 14 1.3372 1.6256 -2.6536 9 1 1.1300 1.9474 -4.0884 10 1 0.0855 1.8930 -1.9006 11 1 2.4315 2.4695 -2.1101 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0754 1.2480 14 6 2.1200 -2.7847 2.4668 15 7 1.7489 -2.0527 3.6859 16 6 2.2385 -2.7452 4.8853 17 6 1.3925 -3.9956 5.1333 18 8 1.6129 -4.9364 4.0807 19 6 2.2435 -0.6697 3.6374 20 1 3.3307 -0.6744 3.5604 21 6 1.8250 0.0669 4.9113 22 6 1.6485 0.0396 2.4186 23 1 -0.3634 -1.0237 -0.0892 24 1 -0.3634 0.4347 0.9313 25 1 -0.3633 0.5892 -0.8420 26 1 2.1959 -1.8541 -3.4658 27 1 0.4378 -2.0703 1.3251 28 1 1.8231 -2.6003 0.3403 29 1 3.2059 -2.8138 2.3764 30 1 1.7322 -3.8020 2.5211 31 1 3.2793 -3.0339 4.7387 32 1 2.1637 -2.0794 5.7451 33 1 1.6762 -4.4431 6.0859 34 1 0.3379 -3.7212 5.1607 35 1 1.1069 -5.7554 4.1727 36 1 0.7377 0.0709 4.9883 37 1 2.2488 -0.4384 5.7791 38 1 2.1903 1.0932 4.8742 39 1 2.0366 1.0567 2.3643 40 1 0.5627 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249600261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:38 Heat of formation + Delta-G solvation = -58.347557 kcal Electronic energy + Delta-G solvation = -18892.230936 eV Core-core repulsion = 16127.168059 eV Total energy + Delta-G solvation = -2765.062877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72270 -38.29700 -36.88532 -34.64018 -33.30931 -32.10981 -29.81536 -28.08117 -27.03704 -25.71129 -23.60718 -22.70105 -21.37367 -20.38881 -19.32846 -18.44483 -17.18192 -16.51071 -16.37666 -16.06472 -15.95666 -15.33026 -15.12436 -14.63587 -14.35092 -14.12026 -13.75161 -13.71406 -13.45434 -13.09607 -12.81009 -12.68464 -12.51012 -12.42825 -12.39165 -11.92441 -11.77108 -11.60342 -11.54220 -11.26533 -11.00197 -10.64431 -10.30210 -9.32174 -8.96094 -8.72835 -6.30802 1.44797 1.53823 1.72299 2.49815 2.90022 3.08133 3.23508 3.47526 3.93596 4.04547 4.10744 4.26698 4.35490 4.39237 4.44695 4.48535 4.57665 4.62567 4.65177 4.69988 4.77784 4.81145 4.89958 4.95526 5.01311 5.03575 5.13125 5.20253 5.26527 5.38698 5.49879 5.81996 6.05254 6.10279 6.14414 6.33729 6.60021 6.74871 6.97750 7.45821 8.66102 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034302 B = 0.006571 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.085711 B = 4260.032339 C = 4811.984498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.188 3.812 3 H 0.033 0.967 4 C -0.587 4.587 5 H 0.019 0.981 6 C -0.022 4.022 7 N -0.939 5.939 8 Si 1.085 2.915 9 H -0.289 1.289 10 H -0.243 1.243 11 H -0.266 1.266 12 N -0.544 5.544 13 C 0.076 3.924 14 C 0.068 3.932 15 N -0.531 5.531 16 C 0.042 3.958 17 C 0.083 3.917 18 O -0.592 6.592 19 C 0.081 3.919 20 H 0.029 0.971 21 C -0.135 4.135 22 C 0.057 3.943 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.249 0.751 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.008 0.992 30 H 0.108 0.892 31 H 0.026 0.974 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.391 0.609 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -1.025 21.255 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.079 3.921 3 H 0.051 0.949 4 C -0.625 4.625 5 H 0.038 0.962 6 C -0.220 4.220 7 N -0.575 5.575 8 Si 0.907 3.093 9 H -0.215 1.215 10 H -0.167 1.167 11 H -0.191 1.191 12 N -0.268 5.268 13 C -0.052 4.052 14 C -0.060 4.060 15 N -0.257 5.257 16 C -0.085 4.085 17 C 0.005 3.995 18 O -0.401 6.401 19 C -0.028 4.028 20 H 0.047 0.953 21 C -0.193 4.193 22 C -0.071 4.071 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.126 0.874 31 H 0.044 0.956 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.035 0.575 19.964 20.201 hybrid contribution 0.487 -2.174 0.466 2.277 sum -2.548 -1.600 20.430 20.650 Atomic orbital electron populations 1.22665 0.99747 1.00398 1.00485 1.19446 0.90246 0.94156 0.88218 0.94923 1.22117 1.38838 1.08802 0.92753 0.96226 1.27162 0.94344 1.08680 0.91790 1.71001 1.44920 1.08764 1.32850 0.83577 0.78775 0.70698 0.76293 1.21539 1.16730 1.19066 1.62300 1.59728 1.02366 1.02373 1.21862 0.96512 0.89912 0.96951 1.22315 0.96486 0.98718 0.88487 1.62263 1.59372 1.01811 1.02226 1.22472 0.96575 0.95547 0.93918 1.22261 0.99064 0.88405 0.89720 1.86484 1.71994 1.31944 1.49643 1.21723 0.96404 0.88788 0.95872 0.95319 1.21843 1.02436 1.00155 0.94864 1.22271 0.98303 0.97329 0.89214 0.94758 0.92837 0.92853 0.94183 0.95600 0.93765 0.97328 0.87414 0.95597 0.86676 0.90833 0.92684 0.75881 0.91622 0.90573 0.90916 0.90552 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.76 8.12 71.98 0.58 -7.18 16 2 C 0.19 9.21 1.93 44.16 0.09 9.30 16 3 H 0.03 1.59 6.75 -2.39 -0.02 1.58 16 4 C -0.59 -34.68 8.27 25.60 0.21 -34.47 16 5 H 0.02 1.29 6.81 -2.91 -0.02 1.27 16 6 C -0.02 -1.32 5.33 84.65 0.45 -0.87 16 7 N -0.94 -60.42 13.70 21.45 0.29 -60.13 16 8 Si 1.09 50.87 26.46 68.60 1.82 52.69 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.24 -10.05 5.54 99.48 0.55 -9.50 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.54 -24.20 4.69 -874.88 -4.10 -28.30 16 13 C 0.08 3.32 4.86 86.31 0.42 3.74 16 14 C 0.07 2.47 5.28 86.31 0.46 2.92 16 15 N -0.53 -15.70 4.47 -870.49 -3.89 -19.59 16 16 C 0.04 0.94 5.37 86.30 0.46 1.41 16 17 C 0.08 1.51 7.34 71.98 0.53 2.04 16 18 O -0.59 -12.83 10.64 -148.98 -1.59 -14.42 16 19 C 0.08 2.36 2.56 44.92 0.12 2.47 16 20 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 21 C -0.14 -2.70 8.93 71.98 0.64 -2.06 16 22 C 0.06 2.00 4.54 86.31 0.39 2.39 16 23 H 0.03 1.59 6.74 -2.39 -0.02 1.58 16 24 H 0.05 2.05 6.37 -2.38 -0.02 2.04 16 25 H 0.05 2.38 4.88 -2.39 -0.01 2.37 16 26 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 27 H 0.03 1.14 6.58 -2.39 -0.02 1.12 16 28 H 0.04 2.24 6.35 -2.38 -0.02 2.23 16 29 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.11 3.76 5.22 -2.38 -0.01 3.75 16 31 H 0.03 0.65 8.03 -2.39 -0.02 0.63 16 32 H 0.12 1.93 5.46 -2.38 -0.01 1.92 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.39 4.85 9.12 -74.06 -0.68 4.17 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.20 6.02 -2.39 -0.01 1.19 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 40 H 0.04 1.30 6.49 -2.39 -0.02 1.28 16 Total: -1.00 -71.59 292.77 -2.96 -74.56 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.16 Total: 15.50 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.35 Total: -20.30 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -7.70 Total: -108.02 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.59 Total: -14.42 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.82 Total: 52.69 kcal Total: -71.59 -2.96 -74.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249600261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.208 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds