Wall clock time and date at job start Mon Mar 30 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99490 * 2 1 4 4 C 1.53008 * 109.46909 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47100 * 61.65089 * 4 3 2 6 6 C 1.40077 * 110.99775 * 54.53815 * 5 4 3 7 7 C 1.54518 * 111.51618 * 188.14291 * 6 5 4 8 8 C 1.50747 * 108.93618 * 283.98102 * 7 6 5 9 9 H 1.08997 * 108.79408 * 331.76533 * 8 7 6 10 10 C 1.53000 * 108.78947 * 213.54256 * 8 7 6 11 11 N 1.48067 * 112.93104 * 92.65407 * 8 7 6 12 12 C 1.47756 * 113.79083 * 318.28367 * 11 8 7 13 13 C 1.47686 * 111.00073 * 183.17573 * 5 4 3 14 14 H 1.09000 * 109.73582 * 271.70674 * 13 5 4 15 15 C 1.50704 * 109.73625 * 32.35664 * 13 5 4 16 16 H 1.08001 * 119.99776 * 5.76195 * 15 13 5 17 17 C 1.37881 * 119.99864 * 185.77013 * 15 13 5 18 18 N 1.31511 * 119.99342 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99977 * 359.97438 * 17 15 13 20 20 H 1.48504 * 109.47106 * 270.00204 * 19 17 15 21 21 H 1.48497 * 109.47389 * 30.00024 * 19 17 15 22 22 H 1.48501 * 109.47125 * 150.00679 * 19 17 15 23 23 H 1.09002 * 109.47554 * 60.00273 * 1 2 3 24 24 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47247 * 299.99511 * 1 2 3 26 26 H 1.08999 * 109.47197 * 60.00555 * 3 2 1 27 27 H 1.08993 * 109.47726 * 299.99595 * 3 2 1 28 28 H 1.08999 * 109.46907 * 301.65270 * 4 3 2 29 29 H 1.08995 * 109.47439 * 181.65416 * 4 3 2 30 30 H 1.08997 * 109.07641 * 308.66644 * 6 5 4 31 31 H 1.09006 * 109.07209 * 67.68808 * 6 5 4 32 32 H 1.08998 * 109.55404 * 43.81803 * 7 6 5 33 33 H 1.08993 * 109.56078 * 164.14925 * 7 6 5 34 34 H 1.08991 * 109.47112 * 60.00296 * 10 8 7 35 35 H 1.09000 * 109.46980 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.46673 * 300.00341 * 10 8 7 37 37 H 1.00902 * 111.00557 * 84.35016 * 11 8 7 38 38 H 1.08992 * 108.99103 * 198.24460 * 12 11 8 39 39 H 1.08993 * 108.99021 * 79.50194 * 12 11 8 40 40 H 0.97004 * 119.99572 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9712 0.4907 -1.2199 6 6 3.4712 1.1249 -2.3644 7 6 3.7498 0.2966 -3.6387 8 6 5.2015 0.4509 -4.0147 9 1 5.5541 1.4206 -3.6634 10 6 5.3228 0.4087 -5.5393 11 7 6.0623 -0.6070 -3.4383 12 6 5.7370 -0.9421 -2.0365 13 6 5.4341 0.2884 -1.2195 14 1 5.9256 1.1549 -1.6617 15 6 5.9206 0.0934 0.1934 16 1 5.2105 0.0232 1.0041 17 6 7.2722 0.0049 0.4511 18 7 7.6966 -0.1658 1.6841 19 14 8.5003 0.1259 -0.9512 20 1 8.7673 -1.2305 -1.4937 21 1 7.9427 0.9873 -2.0246 22 1 9.7672 0.7167 -0.4501 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8554 0.6183 0.8739 29 1 3.9787 2.1800 0.0290 30 1 2.3951 1.2597 -2.2555 31 1 3.9439 2.1019 -2.4654 32 1 3.5324 -0.7539 -3.4458 33 1 3.1217 0.6575 -4.4531 34 1 4.7405 1.2218 -5.9727 35 1 6.3692 0.5190 -5.8237 36 1 4.9450 -0.5452 -5.9075 37 1 6.0576 -1.4329 -4.0180 38 1 6.5837 -1.4642 -1.5910 39 1 4.8685 -1.6005 -2.0216 40 1 8.6475 -0.2284 1.8654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251580260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:59 Heat of formation + Delta-G solvation = -40.738236 kcal Electronic energy + Delta-G solvation = -19201.540395 eV Core-core repulsion = 16437.241116 eV Total energy + Delta-G solvation = -2764.299279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82549 -38.66883 -36.64428 -35.18806 -33.33542 -31.33324 -29.91913 -28.23235 -26.87589 -25.54182 -24.61400 -23.15779 -21.20418 -20.69102 -18.70750 -17.63909 -17.31311 -16.86351 -16.55891 -16.24994 -15.87626 -15.52036 -15.43145 -14.85533 -14.46979 -14.09525 -13.93211 -13.51686 -13.34909 -13.11103 -12.87795 -12.58551 -12.55440 -12.38803 -12.21434 -12.11043 -11.74999 -11.70636 -11.54100 -11.13459 -10.89285 -10.75998 -10.40791 -9.17598 -8.83700 -8.26905 -6.33508 1.38632 1.41374 1.61385 2.37332 2.97924 3.04239 3.20449 3.35802 3.90614 4.02492 4.12120 4.29153 4.34513 4.46531 4.53304 4.57251 4.59716 4.60976 4.67765 4.74174 4.78650 4.82643 4.85885 4.89536 4.98347 5.01836 5.13505 5.26183 5.30978 5.39413 5.48481 5.64986 6.12428 6.15580 6.33729 6.48451 6.66757 6.78922 6.99896 7.34575 8.85453 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.010989 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.510183 B = 2547.415784 C = 3827.164101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.069 3.931 4 C 0.069 3.931 5 N -0.546 5.546 6 C 0.069 3.931 7 C -0.132 4.132 8 C 0.082 3.918 9 H 0.046 0.954 10 C -0.139 4.139 11 N -0.707 5.707 12 C 0.078 3.922 13 C 0.205 3.795 14 H 0.000 1.000 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.023 3.977 18 N -0.941 5.941 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.245 1.245 22 H -0.303 1.303 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.002 0.998 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.344 0.656 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 2.850 -12.167 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.008 4.008 4 C -0.059 4.059 5 N -0.270 5.270 6 C -0.061 4.061 7 C -0.171 4.171 8 C -0.027 4.027 9 H 0.064 0.936 10 C -0.196 4.196 11 N -0.340 5.340 12 C -0.051 4.051 13 C 0.098 3.902 14 H 0.017 0.983 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.175 4.175 18 N -0.581 5.581 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.168 1.168 22 H -0.231 1.231 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.020 0.980 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.324 2.679 -11.900 16.644 hybrid contribution 0.399 0.383 0.106 0.563 sum -10.925 3.062 -11.794 16.365 Atomic orbital electron populations 1.22895 0.80263 1.03358 1.00586 1.88042 1.20694 1.28074 1.95400 1.22711 0.92542 0.84890 1.00624 1.22012 0.92971 0.96264 0.94630 1.58845 1.12990 1.53132 1.02073 1.21197 1.00000 0.94159 0.90717 1.22100 0.97342 1.00694 0.97011 1.21395 0.90760 0.94792 0.95796 0.93566 1.21908 1.02384 1.02963 0.92348 1.60595 1.56348 1.14215 1.02851 1.21892 0.97992 0.98046 0.87214 1.19138 0.84134 0.93064 0.93889 0.98286 1.21502 0.92378 1.49339 0.92772 0.92210 1.25683 1.00229 0.94102 0.97532 1.70026 1.15439 1.51569 1.21092 0.85856 0.77450 0.79578 0.80133 1.19698 1.16816 1.23083 0.93114 0.89189 0.93387 0.92004 0.91904 0.91447 0.94853 0.90010 0.98013 0.92183 0.88405 0.90397 0.92544 0.91513 0.83769 0.93472 0.94929 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -13.60 10.60 -148.98 -1.58 -15.18 16 3 C 0.07 2.16 5.59 71.98 0.40 2.56 16 4 C 0.07 2.81 4.75 86.31 0.41 3.22 16 5 N -0.55 -22.86 3.94 -891.31 -3.51 -26.37 16 6 C 0.07 2.32 4.71 88.05 0.41 2.73 16 7 C -0.13 -3.84 5.19 30.38 0.16 -3.68 16 8 C 0.08 2.54 2.65 43.96 0.12 2.66 16 9 H 0.05 1.68 6.52 -2.39 -0.02 1.66 16 10 C -0.14 -3.09 8.93 71.98 0.64 -2.45 16 11 N -0.71 -25.82 6.58 -494.55 -3.25 -29.07 16 12 C 0.08 3.44 4.49 85.42 0.38 3.83 16 13 C 0.21 9.88 1.41 43.30 0.06 9.94 16 14 H 0.00 -0.02 5.40 -2.39 -0.01 -0.03 16 15 C -0.52 -29.96 8.26 25.60 0.21 -29.75 16 16 H 0.06 3.76 5.43 -2.91 -0.02 3.74 16 17 C 0.02 1.36 5.34 84.66 0.45 1.81 16 18 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 19 Si 0.94 47.47 24.86 68.60 1.71 49.18 16 20 H -0.27 -13.32 7.03 99.48 0.70 -12.62 16 21 H -0.24 -11.97 6.36 99.48 0.63 -11.34 16 22 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.69 6.08 -2.39 -0.01 1.67 16 28 H 0.07 3.29 5.39 -2.39 -0.01 3.28 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 2.44 5.51 -2.39 -0.01 2.42 16 31 H 0.00 0.07 7.59 -2.38 -0.02 0.05 16 32 H 0.06 1.91 7.19 -2.39 -0.02 1.89 16 33 H 0.10 2.17 7.68 -2.39 -0.02 2.15 16 34 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.34 10.66 8.53 -89.69 -0.76 9.90 16 38 H 0.05 2.32 5.29 -2.39 -0.01 2.31 16 39 H 0.03 1.44 7.20 -2.39 -0.02 1.43 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -68.36 293.94 -1.66 -70.02 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.18 Total: 17.69 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.50 Total: -7.31 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -6.47 Total: -114.40 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.58 Total: -15.18 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.71 Total: 49.18 kcal Total: -68.36 -1.66 -70.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251580260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.280 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds