Wall clock time and date at job start Mon Mar 30 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47509 * 2 1 4 4 C 1.50703 * 109.47125 * 239.99898 * 2 1 3 5 5 H 1.07997 * 120.00087 * 241.77573 * 4 2 1 6 6 C 1.37878 * 119.99690 * 61.77041 * 4 2 1 7 7 N 1.31518 * 119.99967 * 11.71334 * 6 4 2 8 8 Si 1.86800 * 119.99845 * 191.70924 * 6 4 2 9 9 H 1.48503 * 109.46971 * 90.00546 * 8 6 4 10 10 H 1.48499 * 109.47263 * 330.00276 * 8 6 4 11 11 H 1.48496 * 109.46945 * 210.00300 * 8 6 4 12 12 N 1.46900 * 109.46792 * 120.00412 * 2 1 3 13 13 C 1.47903 * 110.99901 * 188.31978 * 12 2 1 14 14 C 1.53990 * 107.06156 * 214.15329 * 13 12 2 15 15 H 1.09000 * 110.30675 * 120.23980 * 14 13 12 16 16 O 1.42894 * 110.31211 * 242.31014 * 14 13 12 17 17 C 1.54597 * 105.13990 * 1.22568 * 14 13 12 18 18 C 1.48530 * 111.00315 * 70.92603 * 12 2 1 19 19 H 1.08997 * 110.66658 * 41.28222 * 18 12 2 20 20 C 1.53002 * 110.66571 * 278.15098 * 18 12 2 21 21 N 1.46897 * 109.47080 * 171.54067 * 20 18 12 22 22 C 1.46904 * 110.99712 * 78.35496 * 21 20 18 23 23 C 1.46900 * 111.00517 * 202.30731 * 21 20 18 24 24 H 1.09000 * 109.47430 * 159.54751 * 1 2 3 25 25 H 1.09003 * 109.46816 * 279.55092 * 1 2 3 26 26 H 1.09000 * 109.46761 * 39.54712 * 1 2 3 27 27 H 0.96995 * 120.00212 * 2.89766 * 7 6 4 28 28 H 1.08995 * 109.91766 * 333.51298 * 13 12 2 29 29 H 1.08999 * 109.91652 * 94.60110 * 13 12 2 30 30 H 0.96703 * 114.00430 * 298.55029 * 16 14 13 31 31 H 1.08998 * 110.72745 * 140.31299 * 17 14 13 32 32 H 1.09004 * 110.72459 * 263.42352 * 17 14 13 33 33 H 1.08998 * 109.47797 * 291.54621 * 20 18 12 34 34 H 1.09006 * 109.46838 * 51.54478 * 20 18 12 35 35 H 1.08994 * 109.47488 * 52.24452 * 22 21 20 36 36 H 1.09009 * 109.47156 * 172.24379 * 22 21 20 37 37 H 1.08997 * 109.47123 * 292.23755 * 22 21 20 38 38 H 1.09002 * 109.47331 * 59.99766 * 23 21 20 39 39 H 1.08992 * 109.47692 * 180.02562 * 23 21 20 40 40 H 1.09003 * 109.46817 * 300.00373 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6294 -1.6049 -1.1316 6 6 1.7297 -0.2184 -2.4824 7 7 1.2067 0.9817 -2.6085 8 14 2.0624 -1.2565 -3.9994 9 1 0.8663 -2.0811 -4.3069 10 1 3.2246 -2.1453 -3.7459 11 1 2.3606 -0.3681 -5.1513 12 7 2.0196 -0.6926 1.1994 13 6 3.4844 -0.5418 1.3377 14 6 4.0164 -1.8468 1.9582 15 1 4.7371 -2.3174 1.2894 16 8 4.6175 -1.5836 3.2276 17 6 2.7725 -2.7485 2.1303 18 6 1.7698 -2.1540 1.1095 19 1 1.9816 -2.5193 0.1047 20 6 0.3307 -2.4816 1.5127 21 7 0.0507 -3.8943 1.2233 22 6 0.6290 -4.7673 2.2535 23 6 -1.3932 -4.1274 1.0857 24 1 -0.3634 -0.9629 -0.3591 25 1 -0.3633 0.1705 1.0135 26 1 -0.3633 0.7925 -0.6543 27 1 1.0730 1.5373 -1.8248 28 1 3.9358 -0.3854 0.3580 29 1 3.7109 0.3020 1.9895 30 1 5.3775 -0.9871 3.1869 31 1 3.0085 -3.7831 1.8813 32 1 2.3817 -2.6771 3.1453 33 1 0.2009 -2.2965 2.5790 34 1 -0.3570 -1.8518 0.9483 35 1 0.3068 -4.4298 3.2386 36 1 0.2926 -5.7916 2.0925 37 1 1.7167 -4.7286 2.1939 38 1 -1.7832 -3.5194 0.2694 39 1 -1.5725 -5.1810 0.8723 40 1 -1.8953 -3.8545 2.0139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251626626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:47 Heat of formation + Delta-G solvation = -27.228561 kcal Electronic energy + Delta-G solvation = -19240.384303 eV Core-core repulsion = 16476.670847 eV Total energy + Delta-G solvation = -2763.713456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.26130 -36.80992 -35.81032 -33.38888 -30.72399 -29.58610 -27.50655 -27.12797 -25.38482 -24.68194 -22.02904 -20.59372 -20.36929 -19.53020 -16.93240 -16.56314 -15.90921 -14.95444 -14.72782 -14.49569 -14.04352 -13.78346 -13.62989 -13.00840 -12.75017 -12.50153 -12.19446 -12.05613 -11.70344 -11.48376 -11.24572 -11.17458 -10.95628 -10.87589 -10.68669 -10.42542 -10.23336 -10.10610 -9.97570 -9.52782 -9.40460 -9.00844 -8.34151 -8.00868 -7.16788 -6.36788 -4.09852 3.43174 3.44122 3.60022 4.21501 4.50760 4.54015 5.01231 5.19496 5.29361 5.33812 5.38030 5.52135 5.59851 5.64816 5.72916 5.79960 5.97724 6.02973 6.10216 6.15562 6.25292 6.35893 6.45244 6.50933 6.52731 6.62436 6.73341 6.83792 6.96159 7.26412 7.31412 7.38523 7.45263 7.87447 7.90986 8.03355 8.21172 8.53197 8.80827 9.61064 10.97814 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.010089 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.047242 B = 2774.659242 C = 3570.351700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.186 3.814 3 H 0.027 0.973 4 C -0.624 4.624 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.061 2.939 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.287 1.287 12 N -0.507 5.507 13 C 0.014 3.986 14 C 0.092 3.908 15 H 0.055 0.945 16 O -0.568 6.568 17 C -0.113 4.113 18 C 0.075 3.925 19 H 0.090 0.910 20 C 0.059 3.941 21 N -0.544 5.544 22 C 0.016 3.984 23 C 0.028 3.972 24 H 0.050 0.950 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.271 0.729 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.372 0.628 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -7.641 8.147 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.078 3.922 3 H 0.045 0.955 4 C -0.663 4.663 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.889 3.111 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.213 1.213 12 N -0.232 5.232 13 C -0.115 4.115 14 C 0.033 3.967 15 H 0.073 0.927 16 O -0.373 6.373 17 C -0.151 4.151 18 C -0.033 4.033 19 H 0.107 0.893 20 C -0.068 4.068 21 N -0.268 5.268 22 C -0.133 4.133 23 C -0.120 4.120 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.218 0.782 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.205 -7.924 6.689 10.371 hybrid contribution 0.637 0.284 1.436 1.596 sum 0.842 -7.640 8.125 11.184 Atomic orbital electron populations 1.22029 0.98354 1.00746 0.97954 1.19470 0.91883 0.94254 0.86562 0.95545 1.22426 1.37693 1.13458 0.92712 0.92651 1.25631 0.94008 0.96912 1.00959 1.70769 1.41358 1.07916 1.33993 0.83668 0.76408 0.75253 0.75732 1.21298 1.21630 1.21278 1.64942 1.10499 1.08239 1.39538 1.23384 0.91066 0.96617 1.00406 1.22783 0.94378 0.95615 0.83963 0.92667 1.86503 1.49576 1.70106 1.31084 1.22782 0.94336 0.97429 1.00526 1.22659 0.92761 0.89145 0.98783 0.89281 1.22443 0.98231 0.87350 0.98784 1.61821 1.12564 1.06253 1.46167 1.22674 1.01544 0.96621 0.92421 1.22354 0.87953 1.01588 1.00114 0.93161 0.95327 0.93348 0.91746 0.92045 0.91533 0.78183 0.91131 0.90933 0.95181 0.88550 0.96082 0.92315 0.90530 0.91262 0.91903 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 7.23 37.16 0.27 -2.80 16 2 C 0.19 4.51 1.92 -68.86 -0.13 4.38 16 3 H 0.03 0.71 7.48 -51.93 -0.39 0.32 16 4 C -0.62 -16.45 6.41 -34.44 -0.22 -16.67 16 5 H 0.06 1.49 5.95 -52.49 -0.31 1.18 16 6 C 0.03 0.85 5.19 -17.82 -0.09 0.76 16 7 N -0.91 -26.22 13.15 55.43 0.73 -25.49 16 8 Si 1.06 24.82 29.92 -169.99 -5.09 19.73 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.51 -10.84 4.99 -216.10 -1.08 -11.92 16 13 C 0.01 0.28 6.23 -2.76 -0.02 0.26 16 14 C 0.09 1.56 4.36 -25.38 -0.11 1.45 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 16 O -0.57 -8.83 13.26 -35.23 -0.47 -9.29 16 17 C -0.11 -1.95 4.62 -24.87 -0.12 -2.06 16 18 C 0.08 1.49 2.19 -65.78 -0.14 1.34 16 19 H 0.09 2.03 5.44 -51.93 -0.28 1.75 16 20 C 0.06 1.08 4.71 -3.82 -0.02 1.06 16 21 N -0.54 -8.88 4.93 -251.26 -1.24 -10.12 16 22 C 0.02 0.21 9.06 60.07 0.54 0.76 16 23 C 0.03 0.40 9.48 60.06 0.57 0.97 16 24 H 0.05 1.17 6.15 -51.93 -0.32 0.85 16 25 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 26 H 0.05 1.17 6.74 -51.93 -0.35 0.82 16 27 H 0.27 7.84 6.06 -40.82 -0.25 7.59 16 28 H 0.06 1.32 6.93 -51.93 -0.36 0.96 16 29 H 0.07 1.23 7.97 -51.93 -0.41 0.82 16 30 H 0.37 4.13 9.11 45.56 0.41 4.54 16 31 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 32 H 0.07 1.27 7.84 -51.93 -0.41 0.87 16 33 H 0.03 0.54 7.58 -51.93 -0.39 0.15 16 34 H 0.10 1.90 3.71 -51.93 -0.19 1.71 16 35 H 0.02 0.28 7.89 -51.93 -0.41 -0.13 16 36 H 0.06 0.70 7.98 -51.92 -0.41 0.29 16 37 H 0.08 1.06 4.82 -51.93 -0.25 0.81 16 38 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 39 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -29.39 297.05 -7.67 -37.05 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.53 Total: 6.11 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 0.53 Total: -10.55 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.59 Total: -47.53 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.47 Total: -9.29 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.39 -7.67 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251626626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.826 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds