Wall clock time and date at job start Mon Mar 30 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47509 * 2 1 4 4 C 1.50703 * 109.47125 * 239.99898 * 2 1 3 5 5 H 1.07997 * 120.00087 * 241.77573 * 4 2 1 6 6 C 1.37878 * 119.99690 * 61.77041 * 4 2 1 7 7 N 1.31518 * 119.99967 * 11.71334 * 6 4 2 8 8 Si 1.86800 * 119.99845 * 191.70924 * 6 4 2 9 9 H 1.48503 * 109.46971 * 90.00546 * 8 6 4 10 10 H 1.48499 * 109.47263 * 330.00276 * 8 6 4 11 11 H 1.48496 * 109.46945 * 210.00300 * 8 6 4 12 12 N 1.46900 * 109.46792 * 120.00412 * 2 1 3 13 13 C 1.47903 * 110.99901 * 188.31978 * 12 2 1 14 14 C 1.53990 * 107.06156 * 214.15329 * 13 12 2 15 15 H 1.09000 * 110.30675 * 120.23980 * 14 13 12 16 16 O 1.42894 * 110.31211 * 242.31014 * 14 13 12 17 17 C 1.54597 * 105.13990 * 1.22568 * 14 13 12 18 18 C 1.48530 * 111.00315 * 70.92603 * 12 2 1 19 19 H 1.08997 * 110.66658 * 41.28222 * 18 12 2 20 20 C 1.53002 * 110.66571 * 278.15098 * 18 12 2 21 21 N 1.46897 * 109.47080 * 171.54067 * 20 18 12 22 22 C 1.46904 * 110.99712 * 78.35496 * 21 20 18 23 23 C 1.46900 * 111.00517 * 202.30731 * 21 20 18 24 24 H 1.09000 * 109.47430 * 159.54751 * 1 2 3 25 25 H 1.09003 * 109.46816 * 279.55092 * 1 2 3 26 26 H 1.09000 * 109.46761 * 39.54712 * 1 2 3 27 27 H 0.96995 * 120.00212 * 2.89766 * 7 6 4 28 28 H 1.08995 * 109.91766 * 333.51298 * 13 12 2 29 29 H 1.08999 * 109.91652 * 94.60110 * 13 12 2 30 30 H 0.96703 * 114.00430 * 298.55029 * 16 14 13 31 31 H 1.08998 * 110.72745 * 140.31299 * 17 14 13 32 32 H 1.09004 * 110.72459 * 263.42352 * 17 14 13 33 33 H 1.08998 * 109.47797 * 291.54621 * 20 18 12 34 34 H 1.09006 * 109.46838 * 51.54478 * 20 18 12 35 35 H 1.08994 * 109.47488 * 52.24452 * 22 21 20 36 36 H 1.09009 * 109.47156 * 172.24379 * 22 21 20 37 37 H 1.08997 * 109.47123 * 292.23755 * 22 21 20 38 38 H 1.09002 * 109.47331 * 59.99766 * 23 21 20 39 39 H 1.08992 * 109.47692 * 180.02562 * 23 21 20 40 40 H 1.09003 * 109.46817 * 300.00373 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6294 -1.6049 -1.1316 6 6 1.7297 -0.2184 -2.4824 7 7 1.2067 0.9817 -2.6085 8 14 2.0624 -1.2565 -3.9994 9 1 0.8663 -2.0811 -4.3069 10 1 3.2246 -2.1453 -3.7459 11 1 2.3606 -0.3681 -5.1513 12 7 2.0196 -0.6926 1.1994 13 6 3.4844 -0.5418 1.3377 14 6 4.0164 -1.8468 1.9582 15 1 4.7371 -2.3174 1.2894 16 8 4.6175 -1.5836 3.2276 17 6 2.7725 -2.7485 2.1303 18 6 1.7698 -2.1540 1.1095 19 1 1.9816 -2.5193 0.1047 20 6 0.3307 -2.4816 1.5127 21 7 0.0507 -3.8943 1.2233 22 6 0.6290 -4.7673 2.2535 23 6 -1.3932 -4.1274 1.0857 24 1 -0.3634 -0.9629 -0.3591 25 1 -0.3633 0.1705 1.0135 26 1 -0.3633 0.7925 -0.6543 27 1 1.0730 1.5373 -1.8248 28 1 3.9358 -0.3854 0.3580 29 1 3.7109 0.3020 1.9895 30 1 5.3775 -0.9871 3.1869 31 1 3.0085 -3.7831 1.8813 32 1 2.3817 -2.6771 3.1453 33 1 0.2009 -2.2965 2.5790 34 1 -0.3570 -1.8518 0.9483 35 1 0.3068 -4.4298 3.2386 36 1 0.2926 -5.7916 2.0925 37 1 1.7167 -4.7286 2.1939 38 1 -1.7832 -3.5194 0.2694 39 1 -1.5725 -5.1810 0.8723 40 1 -1.8953 -3.8545 2.0139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251626626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:47 Heat of formation + Delta-G solvation = -50.980581 kcal Electronic energy + Delta-G solvation = -19241.414268 eV Core-core repulsion = 16476.670847 eV Total energy + Delta-G solvation = -2764.743421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81215 -38.06437 -37.35170 -35.18625 -32.52793 -31.07757 -28.99297 -28.40598 -27.03884 -26.51782 -23.53968 -22.11769 -21.85949 -21.24819 -18.67562 -18.07765 -17.45020 -16.36108 -16.17881 -15.89077 -15.65041 -15.51668 -15.01876 -14.58372 -14.38321 -14.13117 -13.47256 -13.36550 -13.12800 -13.08729 -12.87238 -12.67047 -12.57312 -12.52831 -12.38603 -11.99399 -11.96593 -11.82484 -11.43661 -11.13251 -11.01471 -10.86266 -10.43071 -9.23857 -8.98922 -8.52955 -6.27171 1.52465 1.58578 1.75655 2.56525 2.89900 3.19790 3.29091 3.55224 3.74525 3.80041 4.20399 4.24184 4.32899 4.38820 4.51575 4.55544 4.60026 4.66954 4.73269 4.80865 4.82654 4.85320 4.89491 4.93793 5.00679 5.04714 5.06601 5.20559 5.30346 5.37081 5.53407 5.87986 6.08328 6.13800 6.20982 6.33059 6.54719 6.63621 6.85872 7.50336 8.79608 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.010089 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.047242 B = 2774.659242 C = 3570.351700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.190 3.810 3 H -0.005 1.005 4 C -0.618 4.618 5 H 0.050 0.950 6 C -0.017 4.017 7 N -0.931 5.931 8 Si 1.103 2.897 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.512 5.512 13 C 0.012 3.988 14 C 0.103 3.897 15 H 0.067 0.933 16 O -0.571 6.571 17 C -0.104 4.104 18 C 0.078 3.922 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.561 5.561 22 C 0.016 3.984 23 C 0.028 3.972 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -9.666 9.127 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 H 0.013 0.987 4 C -0.656 4.656 5 H 0.068 0.932 6 C -0.217 4.217 7 N -0.567 5.567 8 Si 0.927 3.073 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.236 5.236 13 C -0.117 4.117 14 C 0.043 3.957 15 H 0.085 0.915 16 O -0.378 6.378 17 C -0.141 4.141 18 C -0.031 4.031 19 H 0.076 0.924 20 C -0.060 4.060 21 N -0.286 5.286 22 C -0.131 4.131 23 C -0.120 4.120 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.242 0.758 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.621 -9.955 7.698 12.600 hybrid contribution 0.547 0.918 1.216 1.619 sum 1.168 -9.037 8.913 12.747 Atomic orbital electron populations 1.21823 0.97436 0.99655 0.98392 1.19290 0.92514 0.92729 0.87310 0.98668 1.22621 1.36730 1.12820 0.93476 0.93183 1.26845 0.93714 0.97171 1.04016 1.70879 1.43566 1.08875 1.33427 0.83102 0.77119 0.74260 0.72851 1.20292 1.20010 1.21410 1.64922 1.11777 1.09426 1.37486 1.23444 0.89931 0.98772 0.99533 1.22602 0.94646 0.93834 0.84613 0.91498 1.86461 1.50643 1.70787 1.29955 1.22714 0.93507 0.98314 0.99596 1.22594 0.94653 0.87840 0.98029 0.92424 1.22226 0.96648 0.88718 0.98369 1.61794 1.14148 1.05203 1.47426 1.22709 1.01329 0.97166 0.91925 1.22389 0.86665 1.02736 1.00174 0.93644 0.93652 0.95277 0.93010 0.94582 0.90813 0.75814 0.89221 0.90740 0.94909 0.90547 0.95523 0.90196 0.90718 0.92534 0.89733 0.95277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 7.23 71.98 0.52 -4.90 16 2 C 0.19 9.44 1.92 44.17 0.08 9.53 16 3 H 0.00 -0.25 7.48 -2.39 -0.02 -0.27 16 4 C -0.62 -33.08 6.41 25.60 0.16 -32.92 16 5 H 0.05 2.71 5.95 -2.91 -0.02 2.69 16 6 C -0.02 -0.95 5.19 84.65 0.44 -0.51 16 7 N -0.93 -55.21 13.15 21.45 0.28 -54.92 16 8 Si 1.10 50.03 29.92 68.60 2.05 52.08 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 N -0.51 -21.85 4.99 -837.62 -4.18 -26.03 16 13 C 0.01 0.47 6.23 86.44 0.54 1.01 16 14 C 0.10 3.27 4.36 31.47 0.14 3.41 16 15 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 16 O -0.57 -16.08 13.26 -148.98 -1.98 -18.06 16 17 C -0.10 -3.34 4.62 31.80 0.15 -3.19 16 18 C 0.08 3.00 2.19 45.27 0.10 3.10 16 19 H 0.06 2.62 5.44 -2.39 -0.01 2.61 16 20 C 0.07 2.42 4.71 86.30 0.41 2.83 16 21 N -0.56 -17.25 4.93 -948.84 -4.68 -21.93 16 22 C 0.02 0.40 9.06 127.69 1.16 1.56 16 23 C 0.03 0.74 9.48 127.69 1.21 1.95 16 24 H 0.04 2.16 6.15 -2.39 -0.01 2.14 16 25 H 0.04 1.93 7.83 -2.39 -0.02 1.91 16 26 H 0.03 1.44 6.74 -2.39 -0.02 1.43 16 27 H 0.26 15.60 6.06 -92.71 -0.56 15.04 16 28 H 0.04 1.56 6.93 -2.39 -0.02 1.55 16 29 H 0.07 2.69 7.97 -2.39 -0.02 2.67 16 30 H 0.39 7.57 9.11 -74.05 -0.67 6.89 16 31 H 0.09 2.57 6.21 -2.39 -0.01 2.55 16 32 H 0.07 2.40 7.84 -2.39 -0.02 2.38 16 33 H 0.03 1.13 7.58 -2.39 -0.02 1.11 16 34 H 0.08 3.00 3.71 -2.38 -0.01 2.99 16 35 H 0.03 0.62 7.89 -2.39 -0.02 0.61 16 36 H 0.08 1.62 7.98 -2.38 -0.02 1.60 16 37 H 0.07 1.84 4.82 -2.39 -0.01 1.83 16 38 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 39 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 40 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -62.95 297.05 -3.03 -65.98 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.56 Total: 21.02 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.90 Total: -18.15 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -8.58 Total: -102.88 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.98 Total: -18.06 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.05 Total: 52.08 kcal Total: -62.95 -3.03 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251626626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.999 kcal (2) G-P(sol) polarization free energy of solvation -62.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds