Wall clock time and date at job start Mon Mar 30 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47178 * 64.99740 * 4 3 2 6 6 C 1.46958 * 110.99847 * 66.04578 * 5 4 3 7 7 C 1.53047 * 109.36150 * 183.18848 * 6 5 4 8 8 H 1.08999 * 109.49289 * 61.59228 * 7 6 5 9 9 C 1.53005 * 109.48846 * 181.63236 * 7 6 5 10 10 N 1.46961 * 109.36748 * 301.59608 * 7 6 5 11 11 C 1.46892 * 110.99853 * 183.19100 * 10 7 6 12 12 C 1.46951 * 110.87556 * 59.32452 * 10 7 6 13 13 C 1.46954 * 110.99905 * 189.84692 * 5 4 3 14 14 H 1.08998 * 109.48941 * 296.78091 * 13 5 4 15 15 C 1.50696 * 109.48917 * 56.84554 * 13 5 4 16 16 H 1.07995 * 120.00403 * 359.97438 * 15 13 5 17 17 C 1.37884 * 120.00048 * 179.97438 * 15 13 5 18 18 N 1.31523 * 119.99717 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00038 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47419 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46987 * 120.00710 * 19 17 15 22 22 H 1.48501 * 109.46875 * 239.99994 * 19 17 15 23 23 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 27 27 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 28 28 H 1.08998 * 109.47145 * 185.00090 * 4 3 2 29 29 H 1.08996 * 109.47046 * 304.99741 * 4 3 2 30 30 H 1.08999 * 109.48719 * 303.15771 * 6 5 4 31 31 H 1.08999 * 109.48449 * 63.19990 * 6 5 4 32 32 H 1.09000 * 109.46946 * 59.99530 * 9 7 6 33 33 H 1.08993 * 109.47550 * 180.02562 * 9 7 6 34 34 H 1.09004 * 109.47203 * 300.00597 * 9 7 6 35 35 H 1.08995 * 109.47654 * 60.00426 * 11 10 7 36 36 H 1.09000 * 109.46849 * 180.02562 * 11 10 7 37 37 H 1.09003 * 109.47451 * 299.99644 * 11 10 7 38 38 H 1.09007 * 109.49452 * 60.64518 * 12 10 7 39 39 H 1.09001 * 109.49331 * 180.71290 * 12 10 7 40 40 H 0.96999 * 119.99457 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6968 1.4349 -2.4027 7 6 4.0986 0.7190 -3.6944 8 1 3.5079 -0.1904 -3.8050 9 6 3.8450 1.6408 -4.8890 10 7 5.5257 0.3733 -3.6363 11 6 5.9681 -0.2491 -4.8912 12 6 5.8068 -0.4994 -2.4879 13 6 5.4050 0.2164 -1.1961 14 1 5.9954 1.1260 -1.0856 15 6 5.6548 -0.6915 -0.0195 16 1 4.8358 -0.9825 0.6215 17 6 6.9290 -1.1507 0.2387 18 7 7.9265 -0.7959 -0.5416 19 14 7.2387 -2.2755 1.6975 20 1 5.9610 -2.5214 2.4130 21 1 7.7946 -3.5664 1.2180 22 1 8.2071 -1.6324 2.6216 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.6887 1.8463 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 3.9785 2.1765 0.0902 29 1 3.8508 0.5686 0.8427 30 1 2.6321 1.6666 -2.4314 31 1 4.2675 2.3585 -2.3058 32 1 4.4363 2.5498 -4.7785 33 1 4.1307 1.1306 -5.8088 34 1 2.7867 1.8987 -4.9307 35 1 5.8101 0.4450 -5.7165 36 1 7.0276 -0.4953 -4.8209 37 1 5.3949 -1.1594 -5.0671 38 1 5.2358 -1.4230 -2.5845 39 1 6.8715 -0.7312 -2.4591 40 1 8.8230 -1.1187 -0.3598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251740924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:25 Heat of formation + Delta-G solvation = -26.313473 kcal Electronic energy + Delta-G solvation = -18993.993502 eV Core-core repulsion = 16230.319727 eV Total energy + Delta-G solvation = -2763.673774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.75874 -37.30985 -34.89381 -33.07995 -31.05940 -29.73145 -27.21854 -26.61500 -25.50814 -24.15492 -23.11106 -21.06317 -20.20152 -18.66028 -16.57009 -16.01582 -15.68140 -14.93221 -14.82194 -14.52500 -14.05995 -14.00408 -13.50293 -13.22727 -13.01027 -12.48195 -12.21585 -11.88462 -11.67788 -11.39711 -11.25264 -11.13056 -11.01178 -10.86346 -10.60914 -10.49621 -10.29273 -10.05431 -9.92689 -9.41173 -9.24192 -8.80447 -8.43349 -7.43091 -7.05689 -5.99687 -4.03577 3.32068 3.40148 3.46061 4.24721 4.43192 4.78473 4.92882 5.32498 5.41803 5.48095 5.50696 5.62223 5.69253 5.78482 5.82965 5.85193 5.91441 5.98468 6.05736 6.08914 6.16646 6.28377 6.36061 6.43769 6.47301 6.66165 6.77305 6.92569 7.03439 7.42120 7.55484 7.67901 7.83589 7.98278 8.06054 8.21507 8.37149 8.67651 9.05778 9.61455 11.07078 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.010901 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.216864 B = 2567.838398 C = 4098.630677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.066 3.934 4 C 0.062 3.938 5 N -0.528 5.528 6 C 0.063 3.937 7 C 0.085 3.915 8 H 0.038 0.962 9 C -0.143 4.143 10 N -0.544 5.544 11 C 0.028 3.972 12 C 0.069 3.931 13 C 0.223 3.777 14 H 0.007 0.993 15 C -0.504 4.504 16 H 0.068 0.932 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.108 0.892 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 4.213 -3.956 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.011 4.011 4 C -0.066 4.066 5 N -0.253 5.253 6 C -0.066 4.066 7 C -0.025 4.025 8 H 0.056 0.944 9 C -0.201 4.201 10 N -0.269 5.269 11 C -0.121 4.121 12 C -0.058 4.058 13 C 0.117 3.883 14 H 0.025 0.975 15 C -0.543 4.543 16 H 0.086 0.914 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.125 0.875 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.374 4.010 -3.964 10.939 hybrid contribution 0.011 -0.392 0.663 0.770 sum -9.363 3.618 -3.301 10.566 Atomic orbital electron populations 1.22669 0.82951 1.02067 0.98945 1.88111 1.17718 1.27556 1.95028 1.22693 0.95290 0.84593 0.98498 1.22010 0.90941 0.97890 0.95774 1.62158 1.22242 1.40459 1.00408 1.22099 0.98603 0.94463 0.91399 1.21555 0.89607 0.97036 0.94260 0.94360 1.21868 1.00550 1.00080 0.97632 1.62348 1.15640 1.45332 1.03624 1.22302 1.00397 0.96604 0.92762 1.22472 1.03171 0.92357 0.87849 1.19246 0.81019 0.94959 0.93090 0.97511 1.21224 0.93589 1.28934 1.10527 0.91371 1.24966 0.96094 0.96415 0.96718 1.69902 1.00100 1.45108 1.37907 0.86467 0.78205 0.80442 0.82503 1.19634 1.21092 1.21168 0.94975 0.90205 0.94855 0.94141 0.94169 0.94740 0.88407 0.92240 0.95498 0.92231 0.92807 0.93000 0.92418 0.91882 0.96800 0.96628 0.87453 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.68 10.65 -35.23 -0.38 -7.06 16 3 C 0.07 1.10 6.00 37.16 0.22 1.33 16 4 C 0.06 1.25 5.13 -3.82 -0.02 1.23 16 5 N -0.53 -11.85 4.47 -227.88 -1.02 -12.86 16 6 C 0.06 1.23 4.70 -3.77 -0.02 1.21 16 7 C 0.08 1.60 2.56 -67.65 -0.17 1.43 16 8 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 9 C -0.14 -2.13 8.86 37.16 0.33 -1.80 16 10 N -0.54 -11.56 4.78 -234.73 -1.12 -12.68 16 11 C 0.03 0.50 9.13 60.06 0.55 1.05 16 12 C 0.07 1.71 4.66 -3.77 -0.02 1.70 16 13 C 0.22 5.77 1.95 -68.81 -0.13 5.63 16 14 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 15 C -0.50 -13.89 7.80 -34.44 -0.27 -14.16 16 16 H 0.07 1.91 6.51 -52.49 -0.34 1.57 16 17 C 0.06 1.64 5.30 -17.81 -0.09 1.55 16 18 N -0.89 -25.32 11.35 55.43 0.63 -24.69 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.63 6.28 -51.93 -0.33 0.30 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.10 2.18 5.99 -51.93 -0.31 1.87 16 30 H 0.06 1.03 6.24 -51.93 -0.32 0.71 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.74 6.37 -51.93 -0.33 0.41 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.89 6.25 -51.93 -0.32 0.56 16 36 H 0.06 1.14 8.13 -51.93 -0.42 0.71 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 2.94 6.12 -51.93 -0.32 2.62 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -29.63 307.07 -7.70 -37.33 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.90 Total: -1.78 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 1.49 Total: 0.69 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -1.51 Total: -50.24 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.38 Total: -7.06 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.63 -7.70 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251740924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.015 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds