Wall clock time and date at job start Mon Mar 30 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47178 * 64.99740 * 4 3 2 6 6 C 1.46958 * 110.99847 * 66.04578 * 5 4 3 7 7 C 1.53047 * 109.36150 * 183.18848 * 6 5 4 8 8 H 1.08999 * 109.49289 * 61.59228 * 7 6 5 9 9 C 1.53005 * 109.48846 * 181.63236 * 7 6 5 10 10 N 1.46961 * 109.36748 * 301.59608 * 7 6 5 11 11 C 1.46892 * 110.99853 * 183.19100 * 10 7 6 12 12 C 1.46951 * 110.87556 * 59.32452 * 10 7 6 13 13 C 1.46954 * 110.99905 * 189.84692 * 5 4 3 14 14 H 1.08998 * 109.48941 * 296.78091 * 13 5 4 15 15 C 1.50696 * 109.48917 * 56.84554 * 13 5 4 16 16 H 1.07995 * 120.00403 * 359.97438 * 15 13 5 17 17 C 1.37884 * 120.00048 * 179.97438 * 15 13 5 18 18 N 1.31523 * 119.99717 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00038 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47419 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46987 * 120.00710 * 19 17 15 22 22 H 1.48501 * 109.46875 * 239.99994 * 19 17 15 23 23 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 27 27 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 28 28 H 1.08998 * 109.47145 * 185.00090 * 4 3 2 29 29 H 1.08996 * 109.47046 * 304.99741 * 4 3 2 30 30 H 1.08999 * 109.48719 * 303.15771 * 6 5 4 31 31 H 1.08999 * 109.48449 * 63.19990 * 6 5 4 32 32 H 1.09000 * 109.46946 * 59.99530 * 9 7 6 33 33 H 1.08993 * 109.47550 * 180.02562 * 9 7 6 34 34 H 1.09004 * 109.47203 * 300.00597 * 9 7 6 35 35 H 1.08995 * 109.47654 * 60.00426 * 11 10 7 36 36 H 1.09000 * 109.46849 * 180.02562 * 11 10 7 37 37 H 1.09003 * 109.47451 * 299.99644 * 11 10 7 38 38 H 1.09007 * 109.49452 * 60.64518 * 12 10 7 39 39 H 1.09001 * 109.49331 * 180.71290 * 12 10 7 40 40 H 0.96999 * 119.99457 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6968 1.4349 -2.4027 7 6 4.0986 0.7190 -3.6944 8 1 3.5079 -0.1904 -3.8050 9 6 3.8450 1.6408 -4.8890 10 7 5.5257 0.3733 -3.6363 11 6 5.9681 -0.2491 -4.8912 12 6 5.8068 -0.4994 -2.4879 13 6 5.4050 0.2164 -1.1961 14 1 5.9954 1.1260 -1.0856 15 6 5.6548 -0.6915 -0.0195 16 1 4.8358 -0.9825 0.6215 17 6 6.9290 -1.1507 0.2387 18 7 7.9265 -0.7959 -0.5416 19 14 7.2387 -2.2755 1.6975 20 1 5.9610 -2.5214 2.4130 21 1 7.7946 -3.5664 1.2180 22 1 8.2071 -1.6324 2.6216 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.6887 1.8463 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 3.9785 2.1765 0.0902 29 1 3.8508 0.5686 0.8427 30 1 2.6321 1.6666 -2.4314 31 1 4.2675 2.3585 -2.3058 32 1 4.4363 2.5498 -4.7785 33 1 4.1307 1.1306 -5.8088 34 1 2.7867 1.8987 -4.9307 35 1 5.8101 0.4450 -5.7165 36 1 7.0276 -0.4953 -4.8209 37 1 5.3949 -1.1594 -5.0671 38 1 5.2358 -1.4230 -2.5845 39 1 6.8715 -0.7312 -2.4591 40 1 8.8230 -1.1187 -0.3598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251740924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:25 Heat of formation + Delta-G solvation = -48.808727 kcal Electronic energy + Delta-G solvation = -18994.968969 eV Core-core repulsion = 16230.319727 eV Total energy + Delta-G solvation = -2764.649242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42951 -38.64408 -36.53980 -35.05010 -32.75250 -31.29181 -28.91346 -28.07006 -26.77283 -25.98427 -24.71545 -22.76043 -21.83055 -20.39529 -18.54972 -17.40843 -17.24093 -16.52972 -16.42530 -15.96724 -15.75423 -15.53251 -15.30113 -14.72727 -14.61035 -14.11600 -13.68592 -13.52713 -13.03857 -12.85988 -12.77235 -12.69930 -12.55340 -12.48890 -12.32616 -12.12714 -11.94981 -11.86713 -11.74767 -11.11995 -10.82376 -10.54330 -10.40990 -9.13909 -8.86637 -8.12099 -6.23646 1.39981 1.41920 1.54657 2.41853 3.02692 3.07710 3.25646 3.34867 4.03987 4.12835 4.30396 4.33303 4.39413 4.45097 4.52291 4.59617 4.61330 4.63448 4.69850 4.75127 4.82112 4.86818 4.90344 4.95263 4.98311 5.03886 5.09656 5.22538 5.34835 5.49904 5.61084 5.71619 6.12682 6.26648 6.33029 6.44668 6.55151 6.79747 6.92318 7.45280 8.93941 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.010901 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.216864 B = 2567.838398 C = 4098.630677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.059 3.941 5 N -0.539 5.539 6 C 0.063 3.937 7 C 0.081 3.919 8 H 0.026 0.974 9 C -0.132 4.132 10 N -0.556 5.556 11 C 0.029 3.971 12 C 0.086 3.914 13 C 0.232 3.768 14 H -0.035 1.035 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.959 3.041 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.278 1.278 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.017 0.983 38 H -0.008 1.008 39 H 0.078 0.922 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 4.824 -4.619 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.065 4.065 7 C -0.028 4.028 8 H 0.044 0.956 9 C -0.190 4.190 10 N -0.282 5.282 11 C -0.119 4.119 12 C -0.042 4.042 13 C 0.124 3.876 14 H -0.017 1.017 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.204 1.204 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.010 0.990 39 H 0.096 0.904 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.185 4.636 -4.639 12.966 hybrid contribution 0.517 -0.555 0.852 1.140 sum -10.669 4.080 -3.787 12.034 Atomic orbital electron populations 1.22877 0.80312 1.03217 1.00606 1.88046 1.20682 1.28429 1.95400 1.22581 0.92252 0.84633 1.00590 1.22025 0.94013 0.97031 0.93796 1.62137 1.19596 1.42214 1.02395 1.22228 1.00174 0.93590 0.90524 1.21714 0.87689 0.97436 0.95923 0.95630 1.21796 1.02395 0.98955 0.95854 1.62302 1.17663 1.44505 1.03691 1.22369 0.99885 0.97507 0.92130 1.22029 1.00752 0.91927 0.89535 1.18962 0.82753 0.92829 0.93044 1.01710 1.21412 0.93605 1.29480 1.11324 0.92473 1.25718 0.95825 0.97708 0.99239 1.70030 1.00392 1.45938 1.39208 0.85481 0.78039 0.78590 0.79381 1.19446 1.20566 1.20382 0.93050 0.89469 0.93320 0.92414 0.91460 0.94460 0.91433 0.89338 0.96172 0.92202 0.91371 0.90316 0.89074 0.92657 0.96483 0.98954 0.90422 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -14.26 10.65 -148.98 -1.59 -15.84 16 3 C 0.08 2.40 6.00 71.98 0.43 2.83 16 4 C 0.06 2.42 5.13 86.30 0.44 2.86 16 5 N -0.54 -24.53 4.47 -874.89 -3.91 -28.44 16 6 C 0.06 2.39 4.70 86.31 0.41 2.79 16 7 C 0.08 2.96 2.56 44.92 0.12 3.08 16 8 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 9 C -0.13 -3.48 8.86 71.98 0.64 -2.84 16 10 N -0.56 -23.67 4.78 -896.55 -4.29 -27.96 16 11 C 0.03 1.02 9.13 127.69 1.17 2.18 16 12 C 0.09 4.46 4.66 86.31 0.40 4.86 16 13 C 0.23 12.47 1.95 44.18 0.09 12.55 16 14 H -0.03 -2.10 8.14 -2.39 -0.02 -2.12 16 15 C -0.52 -29.82 7.80 25.60 0.20 -29.62 16 16 H 0.06 3.34 6.51 -2.91 -0.02 3.32 16 17 C 0.01 0.80 5.30 84.65 0.45 1.25 16 18 N -0.92 -53.81 11.35 21.45 0.24 -53.56 16 19 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.60 6.28 -2.39 -0.01 1.59 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 29 H 0.07 3.12 5.99 -2.39 -0.01 3.11 16 30 H 0.09 2.82 6.24 -2.39 -0.01 2.80 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.60 6.37 -2.39 -0.02 1.59 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 2.57 6.25 -2.39 -0.01 2.55 16 36 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 37 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 38 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 39 H 0.08 4.47 6.12 -2.39 -0.01 4.45 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -66.68 307.07 -0.94 -67.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.99 Total: 9.37 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.58 Total: 1.82 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -7.95 Total: -109.96 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.59 Total: -15.84 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.68 -0.94 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251740924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.807 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds