Wall clock time and date at job start Mon Mar 30 2020 04:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99754 * 2 1 4 4 C 1.53001 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47353 * 64.99675 * 4 3 2 6 6 C 1.46956 * 110.99449 * 66.20362 * 5 4 3 7 7 C 1.53061 * 109.36269 * 183.18759 * 6 5 4 8 8 H 1.09000 * 109.48632 * 181.63116 * 7 6 5 9 9 C 1.52997 * 109.48676 * 61.56236 * 7 6 5 10 10 N 1.46963 * 109.36120 * 301.60014 * 7 6 5 11 11 C 1.46900 * 110.99608 * 183.18785 * 10 7 6 12 12 C 1.46956 * 110.88015 * 59.31846 * 10 7 6 13 13 C 1.46959 * 111.00014 * 189.99938 * 5 4 3 14 14 H 1.09002 * 109.50679 * 296.79326 * 13 5 4 15 15 C 1.50701 * 109.48589 * 56.84684 * 13 5 4 16 16 H 1.08002 * 120.00298 * 359.89076 * 15 13 5 17 17 C 1.37875 * 119.99826 * 179.88956 * 15 13 5 18 18 N 1.31522 * 119.99893 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00136 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47206 * 89.99858 * 19 17 15 21 21 H 1.48498 * 109.47475 * 209.99929 * 19 17 15 22 22 H 1.48501 * 109.47055 * 330.00212 * 19 17 15 23 23 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47517 * 299.99968 * 1 2 3 25 25 H 1.09002 * 109.47369 * 60.00160 * 1 2 3 26 26 H 1.08999 * 109.47173 * 60.00104 * 3 2 1 27 27 H 1.08997 * 109.47285 * 299.99960 * 3 2 1 28 28 H 1.09007 * 109.46764 * 304.99589 * 4 3 2 29 29 H 1.09000 * 109.47164 * 185.00663 * 4 3 2 30 30 H 1.09001 * 109.49385 * 303.14967 * 6 5 4 31 31 H 1.08994 * 109.49384 * 63.20283 * 6 5 4 32 32 H 1.09002 * 109.47807 * 300.11290 * 9 7 6 33 33 H 1.09006 * 109.47027 * 60.11264 * 9 7 6 34 34 H 1.09007 * 109.47068 * 180.11127 * 9 7 6 35 35 H 1.09006 * 109.46944 * 292.24551 * 11 10 7 36 36 H 1.08996 * 109.46938 * 52.24413 * 11 10 7 37 37 H 1.08996 * 109.47027 * 172.24361 * 11 10 7 38 38 H 1.08997 * 109.48658 * 60.64728 * 12 10 7 39 39 H 1.08997 * 109.48501 * 180.70899 * 12 10 7 40 40 H 0.97000 * 119.99639 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.6982 1.4375 -2.4035 7 6 4.0988 0.7222 -3.6961 8 1 3.9199 1.3804 -4.5463 9 6 3.2673 -0.5525 -3.8528 10 7 5.5251 0.3731 -3.6377 11 6 5.9666 -0.2488 -4.8932 12 6 5.8038 -0.5016 -2.4902 13 6 5.4032 0.2136 -1.1978 14 1 5.9959 1.1216 -1.0859 15 6 5.6504 -0.6962 -0.0222 16 1 4.8307 -0.9850 0.6190 17 6 6.9231 -1.1601 0.2349 18 7 7.9213 -0.8088 -0.5463 19 14 7.2296 -2.2884 1.6916 20 1 7.0687 -3.7019 1.2654 21 1 8.6093 -2.0784 2.1989 22 1 6.2542 -1.9822 2.7687 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1765 0.0890 30 1 2.6340 1.6717 -2.4324 31 1 4.2709 2.3596 -2.3054 32 1 3.4458 -1.2098 -3.0017 33 1 2.2094 -0.2932 -3.8960 34 1 3.5542 -1.0627 -4.7723 35 1 5.4921 -1.2242 -5.0020 36 1 5.6855 0.3875 -5.7323 37 1 7.0495 -0.3713 -4.8769 38 1 5.2307 -1.4236 -2.5882 39 1 6.8679 -0.7358 -2.4614 40 1 8.8167 -1.1348 -0.3652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251740925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:28 Heat of formation + Delta-G solvation = -23.833934 kcal Electronic energy + Delta-G solvation = -19215.469918 eV Core-core repulsion = 16451.903664 eV Total energy + Delta-G solvation = -2763.566254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.92790 -37.33308 -34.83419 -33.00707 -30.60402 -29.69002 -27.29554 -26.29708 -25.47985 -24.62909 -23.14888 -21.23523 -20.49836 -17.72577 -16.54745 -15.97222 -15.80060 -15.04366 -14.82522 -14.54464 -14.21238 -13.54752 -13.44717 -13.32859 -13.07914 -12.35234 -12.23667 -11.76188 -11.58395 -11.43630 -11.27467 -11.01730 -10.91117 -10.90007 -10.64148 -10.45915 -10.17800 -9.99069 -9.92545 -9.39837 -9.23814 -8.81408 -8.42227 -7.39380 -7.01421 -5.99083 -4.03226 3.33667 3.40087 3.44099 4.24999 4.43383 4.85535 4.97509 5.33732 5.42533 5.51009 5.56814 5.65671 5.73013 5.81464 5.81970 5.84944 5.92069 6.05088 6.11282 6.20188 6.25083 6.35223 6.44616 6.49142 6.57510 6.73679 6.80907 6.99859 7.18121 7.42174 7.56859 7.68746 7.83683 8.00544 8.07074 8.22597 8.38197 8.68280 9.05938 9.61842 11.07468 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.011111 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.657466 B = 2519.324144 C = 3837.601180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.067 3.933 4 C 0.061 3.939 5 N -0.522 5.522 6 C 0.061 3.939 7 C 0.086 3.914 8 H 0.064 0.936 9 C -0.172 4.172 10 N -0.544 5.544 11 C 0.030 3.970 12 C 0.066 3.934 13 C 0.224 3.776 14 H 0.006 0.994 15 C -0.504 4.504 16 H 0.067 0.933 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.019 0.981 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.105 0.895 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 3.374 -3.429 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.010 4.010 4 C -0.067 4.067 5 N -0.247 5.247 6 C -0.068 4.068 7 C -0.024 4.024 8 H 0.082 0.918 9 C -0.231 4.231 10 N -0.268 5.268 11 C -0.119 4.119 12 C -0.061 4.061 13 C 0.117 3.883 14 H 0.024 0.976 15 C -0.543 4.543 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.123 0.877 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.533 3.180 -3.444 10.623 hybrid contribution -0.024 -0.362 0.628 0.725 sum -9.557 2.818 -2.816 10.355 Atomic orbital electron populations 1.22661 0.82993 1.02035 0.98924 1.88108 1.17665 1.27543 1.95023 1.22685 0.95302 0.84585 0.98455 1.22017 0.90932 0.97900 0.95856 1.62158 1.22223 1.40098 1.00254 1.22091 0.98616 0.94306 0.91754 1.21634 0.88337 0.95786 0.96596 0.91750 1.22287 0.99217 0.99884 1.01690 1.62549 1.15335 1.45243 1.03679 1.22246 1.00562 0.96760 0.92330 1.22488 1.03111 0.92705 0.87807 1.19232 0.81070 0.94897 0.93065 0.97626 1.21184 0.93611 1.28891 1.10640 0.91443 1.24957 0.96100 0.96410 0.96681 1.69894 1.00166 1.45009 1.37925 0.86525 0.77237 0.81051 0.82765 1.20737 1.21415 1.19880 0.90232 0.95013 0.94876 0.94244 0.94162 0.88428 0.94790 0.92196 0.95627 0.90157 0.93545 0.94232 0.96273 0.93024 0.91961 0.96019 0.87675 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.54 10.65 -35.23 -0.38 -6.92 16 3 C 0.07 1.10 6.00 37.16 0.22 1.32 16 4 C 0.06 1.22 5.13 -3.83 -0.02 1.20 16 5 N -0.52 -11.38 3.78 -227.88 -0.86 -12.25 16 6 C 0.06 1.17 4.84 -3.76 -0.02 1.15 16 7 C 0.09 1.60 2.96 -67.65 -0.20 1.40 16 8 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 9 C -0.17 -3.08 8.37 37.16 0.31 -2.77 16 10 N -0.54 -11.44 4.92 -234.73 -1.15 -12.60 16 11 C 0.03 0.53 9.09 60.06 0.55 1.08 16 12 C 0.07 1.61 4.27 -3.77 -0.02 1.60 16 13 C 0.22 5.69 1.95 -68.81 -0.13 5.55 16 14 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 15 C -0.50 -13.74 7.80 -34.44 -0.27 -14.01 16 16 H 0.07 1.87 6.51 -52.49 -0.34 1.52 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -25.21 11.34 55.43 0.63 -24.59 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.62 6.28 -51.93 -0.33 0.29 16 28 H 0.10 2.15 5.99 -51.93 -0.31 1.84 16 29 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.06 1.02 6.25 -51.93 -0.32 0.70 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.70 5.94 -51.93 -0.31 1.39 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.66 6.65 -51.93 -0.35 0.31 16 35 H 0.02 0.33 6.80 -51.93 -0.35 -0.02 16 36 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.55 6.35 -51.93 -0.33 0.22 16 39 H 0.11 2.86 6.12 -51.93 -0.32 2.54 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -28.95 302.88 -7.51 -36.47 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.73 Total: -0.62 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 1.44 Total: -0.42 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -1.39 Total: -49.43 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.38 Total: -6.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.95 -7.51 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251740925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.632 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds