Wall clock time and date at job start Mon Mar 30 2020 04:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99754 * 2 1 4 4 C 1.53001 * 109.46950 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47353 * 64.99675 * 4 3 2 6 6 C 1.46956 * 110.99449 * 66.20362 * 5 4 3 7 7 C 1.53061 * 109.36269 * 183.18759 * 6 5 4 8 8 H 1.09000 * 109.48632 * 181.63116 * 7 6 5 9 9 C 1.52997 * 109.48676 * 61.56236 * 7 6 5 10 10 N 1.46963 * 109.36120 * 301.60014 * 7 6 5 11 11 C 1.46900 * 110.99608 * 183.18785 * 10 7 6 12 12 C 1.46956 * 110.88015 * 59.31846 * 10 7 6 13 13 C 1.46959 * 111.00014 * 189.99938 * 5 4 3 14 14 H 1.09002 * 109.50679 * 296.79326 * 13 5 4 15 15 C 1.50701 * 109.48589 * 56.84684 * 13 5 4 16 16 H 1.08002 * 120.00298 * 359.89076 * 15 13 5 17 17 C 1.37875 * 119.99826 * 179.88956 * 15 13 5 18 18 N 1.31522 * 119.99893 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00136 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47206 * 89.99858 * 19 17 15 21 21 H 1.48498 * 109.47475 * 209.99929 * 19 17 15 22 22 H 1.48501 * 109.47055 * 330.00212 * 19 17 15 23 23 H 1.09003 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47517 * 299.99968 * 1 2 3 25 25 H 1.09002 * 109.47369 * 60.00160 * 1 2 3 26 26 H 1.08999 * 109.47173 * 60.00104 * 3 2 1 27 27 H 1.08997 * 109.47285 * 299.99960 * 3 2 1 28 28 H 1.09007 * 109.46764 * 304.99589 * 4 3 2 29 29 H 1.09000 * 109.47164 * 185.00663 * 4 3 2 30 30 H 1.09001 * 109.49385 * 303.14967 * 6 5 4 31 31 H 1.08994 * 109.49384 * 63.20283 * 6 5 4 32 32 H 1.09002 * 109.47807 * 300.11290 * 9 7 6 33 33 H 1.09006 * 109.47027 * 60.11264 * 9 7 6 34 34 H 1.09007 * 109.47068 * 180.11127 * 9 7 6 35 35 H 1.09006 * 109.46944 * 292.24551 * 11 10 7 36 36 H 1.08996 * 109.46938 * 52.24413 * 11 10 7 37 37 H 1.08996 * 109.47027 * 172.24361 * 11 10 7 38 38 H 1.08997 * 109.48658 * 60.64728 * 12 10 7 39 39 H 1.08997 * 109.48501 * 180.70899 * 12 10 7 40 40 H 0.97000 * 119.99639 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.6982 1.4375 -2.4035 7 6 4.0988 0.7222 -3.6961 8 1 3.9199 1.3804 -4.5463 9 6 3.2673 -0.5525 -3.8528 10 7 5.5251 0.3731 -3.6377 11 6 5.9666 -0.2488 -4.8932 12 6 5.8038 -0.5016 -2.4902 13 6 5.4032 0.2136 -1.1978 14 1 5.9959 1.1216 -1.0859 15 6 5.6504 -0.6962 -0.0222 16 1 4.8307 -0.9850 0.6190 17 6 6.9231 -1.1601 0.2349 18 7 7.9213 -0.8088 -0.5463 19 14 7.2296 -2.2884 1.6916 20 1 7.0687 -3.7019 1.2654 21 1 8.6093 -2.0784 2.1989 22 1 6.2542 -1.9822 2.7687 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1765 0.0890 30 1 2.6340 1.6717 -2.4324 31 1 4.2709 2.3596 -2.3054 32 1 3.4458 -1.2098 -3.0017 33 1 2.2094 -0.2932 -3.8960 34 1 3.5542 -1.0627 -4.7723 35 1 5.4921 -1.2242 -5.0020 36 1 5.6855 0.3875 -5.7323 37 1 7.0495 -0.3713 -4.8769 38 1 5.2307 -1.4236 -2.5882 39 1 6.8679 -0.7358 -2.4614 40 1 8.8167 -1.1348 -0.3652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251740925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:28 Heat of formation + Delta-G solvation = -45.348374 kcal Electronic energy + Delta-G solvation = -19216.402854 eV Core-core repulsion = 16451.903664 eV Total energy + Delta-G solvation = -2764.499190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58083 -38.64012 -36.46633 -34.99178 -32.29330 -31.28586 -28.88759 -27.78504 -26.81740 -26.42010 -24.71107 -23.02068 -22.09487 -19.42549 -18.50168 -17.49841 -17.23763 -16.56895 -16.41453 -16.00370 -15.80152 -15.37900 -14.99580 -14.86250 -14.61209 -13.99913 -13.82145 -13.39028 -13.02985 -12.90240 -12.84145 -12.68613 -12.55228 -12.40287 -12.29222 -12.08296 -11.93686 -11.81539 -11.64834 -11.08368 -10.81558 -10.52126 -10.38594 -9.05826 -8.78073 -8.09988 -6.21410 1.41780 1.42816 1.53317 2.42881 3.05021 3.11659 3.31487 3.40439 4.07315 4.16489 4.33170 4.34073 4.40027 4.49435 4.58086 4.61174 4.63691 4.66518 4.73394 4.79160 4.85100 4.89510 4.92735 4.95165 5.00382 5.07196 5.12845 5.24660 5.45298 5.60205 5.67437 5.73490 6.16775 6.30260 6.37681 6.47396 6.58785 6.83225 6.95065 7.47519 8.95537 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.011111 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.657466 B = 2519.324144 C = 3837.601180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.077 3.923 4 C 0.058 3.942 5 N -0.527 5.527 6 C 0.060 3.940 7 C 0.082 3.918 8 H 0.097 0.903 9 C -0.160 4.160 10 N -0.559 5.559 11 C 0.031 3.969 12 C 0.086 3.914 13 C 0.232 3.768 14 H -0.039 1.039 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.270 1.270 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.846 3.767 -4.143 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.000 4.000 4 C -0.070 4.070 5 N -0.252 5.252 6 C -0.068 4.068 7 C -0.027 4.027 8 H 0.115 0.885 9 C -0.219 4.219 10 N -0.283 5.283 11 C -0.117 4.117 12 C -0.042 4.042 13 C 0.125 3.875 14 H -0.021 1.021 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.194 1.194 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.090 0.910 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.535 3.583 -4.166 12.777 hybrid contribution 0.538 -0.440 0.821 1.076 sum -10.998 3.144 -3.345 11.917 Atomic orbital electron populations 1.22862 0.80421 1.03163 1.00524 1.88047 1.20542 1.28320 1.95381 1.22559 0.92278 0.84654 1.00465 1.22030 0.93982 0.96975 0.94013 1.62130 1.19399 1.41621 1.02010 1.22225 1.00208 0.93414 0.90999 1.21819 0.86793 0.96656 0.97396 0.88501 1.22141 1.00425 0.98701 1.00615 1.62460 1.17481 1.44601 1.03795 1.22294 1.00159 0.97496 0.91733 1.22000 1.00536 0.92473 0.89213 1.18948 0.82850 0.92652 0.93089 1.02107 1.21389 0.93573 1.29293 1.11423 0.92459 1.25696 0.95881 0.97737 0.99145 1.70030 1.00405 1.45915 1.39245 0.85563 0.77220 0.79124 0.79759 1.20344 1.20812 1.19418 0.89489 0.93222 0.93336 0.91725 0.92423 0.91505 0.94673 0.89216 0.96542 0.93896 0.91331 0.92934 0.95972 0.89750 0.92751 0.97699 0.91012 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -13.81 10.65 -148.98 -1.59 -15.39 16 3 C 0.08 2.38 6.00 71.98 0.43 2.81 16 4 C 0.06 2.33 5.13 86.30 0.44 2.77 16 5 N -0.53 -23.17 3.78 -874.87 -3.31 -26.47 16 6 C 0.06 2.21 4.84 86.31 0.42 2.62 16 7 C 0.08 2.88 2.96 44.92 0.13 3.01 16 8 H 0.10 2.84 8.09 -2.39 -0.02 2.82 16 9 C -0.16 -5.38 8.37 71.98 0.60 -4.78 16 10 N -0.56 -23.30 4.92 -896.54 -4.41 -27.70 16 11 C 0.03 1.07 9.09 127.69 1.16 2.23 16 12 C 0.09 4.35 4.27 86.31 0.37 4.72 16 13 C 0.23 12.26 1.95 44.17 0.09 12.35 16 14 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 15 C -0.52 -29.36 7.80 25.60 0.20 -29.16 16 16 H 0.06 3.30 6.51 -2.91 -0.02 3.28 16 17 C 0.01 0.81 5.30 84.65 0.45 1.26 16 18 N -0.92 -53.70 11.34 21.45 0.24 -53.46 16 19 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.57 6.28 -2.39 -0.02 1.55 16 28 H 0.07 3.05 5.99 -2.38 -0.01 3.04 16 29 H 0.04 1.37 8.12 -2.39 -0.02 1.35 16 30 H 0.09 2.77 6.25 -2.39 -0.01 2.75 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 1.78 5.94 -2.39 -0.01 1.76 16 33 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.05 1.61 6.65 -2.38 -0.02 1.59 16 35 H 0.02 0.74 6.80 -2.38 -0.02 0.72 16 36 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.00 0.26 6.35 -2.39 -0.02 0.24 16 39 H 0.07 4.09 6.12 -2.39 -0.01 4.08 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -65.01 302.88 -0.50 -65.51 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.00 Total: 10.98 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.54 Total: -0.29 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -7.47 Total: -107.64 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.59 Total: -15.39 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.01 -0.50 -65.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251740925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.159 kcal (2) G-P(sol) polarization free energy of solvation -65.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds