Wall clock time and date at job start Mon Mar 30 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47311 * 64.99673 * 4 3 2 6 6 C 1.46959 * 111.00050 * 189.84192 * 5 4 3 7 7 C 1.53052 * 109.36515 * 176.81423 * 6 5 4 8 8 H 1.08993 * 109.48871 * 178.37300 * 7 6 5 9 9 C 1.53000 * 109.50659 * 298.42719 * 7 6 5 10 10 N 1.46956 * 109.36402 * 58.40247 * 7 6 5 11 11 C 1.46896 * 111.00023 * 176.81038 * 10 7 6 12 12 C 1.46958 * 110.88153 * 300.68264 * 10 7 6 13 13 H 1.09005 * 109.50493 * 299.34013 * 12 10 7 14 14 C 1.50706 * 109.48812 * 179.28763 * 12 10 7 15 15 H 1.07994 * 119.99966 * 0.10648 * 14 12 10 16 16 C 1.37872 * 119.99937 * 180.10874 * 14 12 10 17 17 N 1.31516 * 119.99779 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47227 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47285 * 120.00122 * 18 16 14 21 21 H 1.48501 * 109.47213 * 239.99968 * 18 16 14 22 22 C 1.46961 * 110.99567 * 66.04805 * 5 4 3 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 27 27 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 28 28 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 29 29 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 30 30 H 1.08996 * 109.49237 * 296.78597 * 6 5 4 31 31 H 1.09003 * 109.48785 * 56.84823 * 6 5 4 32 32 H 1.09003 * 109.47479 * 179.90044 * 9 7 6 33 33 H 1.08998 * 109.47302 * 299.90330 * 9 7 6 34 34 H 1.09003 * 109.47394 * 59.90431 * 9 7 6 35 35 H 1.08996 * 109.47213 * 183.79798 * 11 10 7 36 36 H 1.08999 * 109.47244 * 303.80335 * 11 10 7 37 37 H 1.08998 * 109.47174 * 63.80164 * 11 10 7 38 38 H 0.97004 * 119.99742 * 179.97438 * 17 16 14 39 39 H 1.08993 * 109.49083 * 303.15308 * 22 5 4 40 40 H 1.09004 * 109.48920 * 63.20075 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 5.4041 0.2168 -1.1992 7 6 5.8049 -0.4987 -2.4915 8 1 6.8695 -0.7304 -2.4638 9 6 5.0037 -1.7950 -2.6274 10 7 5.5228 0.3745 -3.6394 11 6 5.9643 -0.2474 -4.8949 12 6 4.0957 0.7204 -3.6963 13 1 3.5049 -0.1890 -3.8068 14 6 3.8450 1.6288 -4.8724 15 1 4.6633 1.9188 -5.5147 16 6 2.5710 2.0895 -5.1283 17 7 1.5744 1.7358 -4.3464 18 14 2.2603 3.2160 -6.5857 19 1 3.5376 3.4622 -7.3021 20 1 1.2900 2.5748 -7.5090 21 1 1.7065 4.5070 -6.1042 22 6 3.6949 1.4358 -2.4040 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.9786 2.1764 0.0890 29 1 3.8514 0.5681 0.8409 30 1 5.9946 1.1263 -1.0889 31 1 5.5855 -0.4403 -0.3486 32 1 5.2882 -2.3032 -3.5487 33 1 5.2130 -2.4424 -1.7758 34 1 3.9390 -1.5631 -2.6544 35 1 5.8056 0.4470 -5.7199 36 1 7.0239 -0.4933 -4.8256 37 1 5.3909 -1.1576 -5.0708 38 1 0.6781 2.0603 -4.5262 39 1 2.6303 1.6675 -2.4318 40 1 4.2658 2.3594 -2.3072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251761539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:48 Heat of formation + Delta-G solvation = -24.683938 kcal Electronic energy + Delta-G solvation = -19256.310185 eV Core-core repulsion = 16492.707072 eV Total energy + Delta-G solvation = -2763.603113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.89592 -37.25794 -34.74096 -33.15037 -30.66523 -29.47931 -27.40348 -25.95207 -25.28332 -24.98843 -22.81232 -21.48031 -20.51164 -17.70645 -16.58272 -15.98029 -15.59917 -15.10562 -14.58352 -14.45218 -14.06449 -13.88075 -13.41701 -13.19964 -13.04872 -12.55608 -12.04481 -11.70967 -11.45648 -11.34277 -11.20048 -11.00386 -10.98104 -10.82687 -10.54577 -10.43561 -10.22963 -10.00247 -9.96155 -9.40515 -9.04824 -8.86333 -8.45057 -7.38608 -7.00808 -6.02278 -4.06424 3.28213 3.36476 3.41077 4.30911 4.39824 4.72850 5.10852 5.30890 5.52763 5.57966 5.65307 5.77510 5.82638 5.83767 5.94381 5.96224 6.04299 6.11513 6.18776 6.22218 6.35474 6.39715 6.42334 6.52171 6.68362 6.82767 6.86167 6.99172 7.10031 7.44339 7.63993 7.72608 7.80463 7.98361 8.07611 8.21183 8.37400 8.67912 9.02217 9.58380 11.03850 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.010844 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.817714 B = 2581.452000 C = 3771.356205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.066 3.934 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.068 3.932 7 C 0.083 3.917 8 H 0.065 0.935 9 C -0.173 4.173 10 N -0.539 5.539 11 C 0.039 3.961 12 C 0.221 3.779 13 H 0.016 0.984 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.064 3.936 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.111 0.889 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 -2.347 7.312 7.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C -0.011 4.011 4 C -0.068 4.068 5 N -0.255 5.255 6 C -0.061 4.061 7 C -0.027 4.027 8 H 0.083 0.917 9 C -0.232 4.232 10 N -0.263 5.263 11 C -0.110 4.110 12 C 0.114 3.886 13 H 0.034 0.966 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.063 4.063 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.888 -2.472 7.324 7.957 hybrid contribution -0.490 0.894 -0.718 1.247 sum 1.397 -1.578 6.606 6.934 Atomic orbital electron populations 1.22648 0.82309 1.01961 0.99411 1.87954 1.18417 1.27476 1.95196 1.22576 0.93664 0.85094 0.99737 1.21985 0.93619 0.97353 0.93837 1.62271 1.15636 1.44979 1.02658 1.22035 0.89200 0.98162 0.96698 1.21633 0.97601 0.91576 0.91869 0.91718 1.22303 1.03549 0.97634 0.99722 1.62443 1.22597 1.40004 1.01274 1.22162 0.97271 0.97743 0.93813 1.19264 0.81522 0.95105 0.92686 0.96643 1.21231 0.93609 1.28961 1.10666 0.91772 1.24943 0.96100 0.96428 0.96629 1.69909 1.00054 1.45006 1.37816 0.86495 0.78198 0.80449 0.82602 1.19770 1.21120 1.21119 1.22560 1.03347 0.92171 0.88200 0.90384 0.93783 0.95306 0.91941 0.94415 0.94414 0.91322 0.95377 0.92024 0.93915 0.93767 0.90350 0.90872 0.94134 0.96556 0.93086 0.87140 0.97049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.02 10.65 -35.23 -0.38 -7.39 16 3 C 0.07 1.17 6.00 37.16 0.22 1.39 16 4 C 0.06 1.07 5.34 -3.83 -0.02 1.05 16 5 N -0.53 -11.02 3.98 -234.46 -0.93 -11.95 16 6 C 0.07 1.27 5.04 -3.77 -0.02 1.25 16 7 C 0.08 1.60 2.97 -67.66 -0.20 1.40 16 8 H 0.06 1.13 8.13 -51.93 -0.42 0.70 16 9 C -0.17 -3.28 8.37 37.16 0.31 -2.97 16 10 N -0.54 -12.02 4.72 -228.14 -1.08 -13.10 16 11 C 0.04 0.79 8.83 60.06 0.53 1.32 16 12 C 0.22 5.60 1.57 -68.80 -0.11 5.50 16 13 H 0.02 0.45 6.35 -51.93 -0.33 0.13 16 14 C -0.51 -13.76 7.93 -34.44 -0.27 -14.04 16 15 H 0.06 1.76 6.45 -52.49 -0.34 1.42 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.71 11.34 55.43 0.63 -24.08 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.06 1.55 4.45 -3.76 -0.02 1.54 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 1.25 6.27 -51.93 -0.33 0.93 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 32 H 0.04 0.77 6.56 -51.93 -0.34 0.43 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.75 5.95 -51.93 -0.31 1.44 16 35 H 0.07 1.56 6.28 -51.93 -0.33 1.24 16 36 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.02 0.33 6.58 -51.93 -0.34 -0.01 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 39 H 0.11 2.91 4.22 -51.93 -0.22 2.69 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -28.80 302.80 -7.50 -36.29 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.73 Total: 0.00 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 1.44 Total: -0.40 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.38 Total: -49.12 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.38 Total: -7.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.80 -7.50 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251761539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.609 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds