Wall clock time and date at job start Mon Mar 30 2020 04:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99923 * 2 1 4 4 C 1.53002 * 109.46867 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47199 * 62.59685 * 4 3 2 6 6 C 1.46961 * 110.99938 * 52.36428 * 5 4 3 7 7 C 1.53053 * 109.36465 * 183.18873 * 6 5 4 8 8 H 1.08995 * 109.50453 * 61.57715 * 7 6 5 9 9 C 1.50692 * 109.49145 * 181.63250 * 7 6 5 10 10 H 1.08002 * 120.00676 * 119.88835 * 9 7 6 11 11 C 1.37877 * 120.00042 * 299.89403 * 9 7 6 12 12 N 1.31521 * 119.99993 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00379 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46829 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 119.99654 * 13 11 9 16 16 H 1.48503 * 109.47304 * 240.00073 * 13 11 9 17 17 N 1.46962 * 109.36422 * 301.60248 * 7 6 5 18 18 C 1.46899 * 111.00026 * 183.18797 * 17 7 6 19 19 C 1.46955 * 110.88040 * 59.31716 * 17 7 6 20 20 H 1.08996 * 109.50525 * 60.66237 * 19 17 7 21 21 C 1.53000 * 109.48602 * 180.71384 * 19 17 7 22 22 C 1.46953 * 111.00291 * 176.16374 * 5 4 3 23 23 H 1.09005 * 109.46830 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47282 * 299.99950 * 1 2 3 25 25 H 1.09001 * 109.47010 * 60.00234 * 1 2 3 26 26 H 1.08996 * 109.47385 * 299.99513 * 3 2 1 27 27 H 1.08997 * 109.47270 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.47191 * 182.59348 * 4 3 2 29 29 H 1.08999 * 109.47451 * 302.59190 * 4 3 2 30 30 H 1.08996 * 109.49143 * 303.15458 * 6 5 4 31 31 H 1.09000 * 109.48875 * 63.22526 * 6 5 4 32 32 H 0.97000 * 119.99897 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47340 * 292.24679 * 18 17 7 34 34 H 1.09009 * 109.46897 * 52.24300 * 18 17 7 35 35 H 1.08991 * 109.47272 * 172.24188 * 18 17 7 36 36 H 1.08997 * 109.47203 * 179.89556 * 21 19 17 37 37 H 1.09002 * 109.46872 * 299.88999 * 21 19 17 38 38 H 1.08998 * 109.47421 * 59.89308 * 21 19 17 39 39 H 1.08998 * 109.48969 * 296.78333 * 22 5 4 40 40 H 1.09006 * 109.48881 * 56.84220 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9738 0.5103 -1.2286 6 6 3.4098 1.1642 -2.4178 7 6 3.8242 0.3865 -3.6691 8 1 3.4259 -0.6267 -3.6164 9 6 3.2809 1.0772 -4.8933 10 1 3.9569 1.4407 -5.6531 11 6 1.9207 1.2453 -5.0434 12 7 1.0973 0.8024 -4.1184 13 14 1.2471 2.1021 -6.5605 14 1 2.3723 2.5034 -7.4428 15 1 0.3483 1.1755 -7.2943 16 1 0.4856 3.3092 -6.1502 17 7 5.2908 0.3334 -3.7465 18 6 5.7291 -0.3410 -4.9757 19 6 5.8547 -0.3205 -2.5573 20 1 5.4798 -1.3419 -2.4914 21 6 7.3809 -0.3427 -2.6624 22 6 5.4403 0.4572 -1.3060 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 3.9787 2.1794 0.0471 29 1 3.8536 0.6043 0.8667 30 1 2.3226 1.1800 -2.3429 31 1 3.7851 2.1855 -2.4835 32 1 0.1403 0.9203 -4.2242 33 1 5.4600 -1.3961 -4.9271 34 1 5.2422 0.1189 -5.8358 35 1 6.8102 -0.2460 -5.0765 36 1 7.7989 -0.8261 -1.7795 37 1 7.6757 -0.8967 -3.5537 38 1 7.7554 0.6788 -2.7291 39 1 5.8386 1.4704 -1.3590 40 1 5.8334 -0.0424 -0.4205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251761542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:51 Heat of formation + Delta-G solvation = -24.913365 kcal Electronic energy + Delta-G solvation = -19143.615651 eV Core-core repulsion = 16380.002590 eV Total energy + Delta-G solvation = -2763.613061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.75898 -37.18701 -34.74808 -33.31253 -30.95880 -29.60155 -27.26802 -25.95433 -25.24390 -25.09948 -22.73027 -21.20524 -20.01354 -18.61024 -16.43836 -15.94661 -15.59389 -15.14806 -14.69575 -14.50967 -14.00933 -13.89568 -13.61801 -13.06260 -12.91772 -12.31318 -12.16931 -11.81506 -11.61484 -11.37423 -11.23755 -11.03407 -10.91312 -10.89940 -10.60366 -10.38620 -10.32572 -10.03453 -9.94358 -9.37060 -8.96735 -8.86621 -8.45169 -7.39223 -7.06939 -6.01042 -4.06021 3.28301 3.36500 3.41083 4.35094 4.39740 4.72082 5.03878 5.29756 5.54162 5.54711 5.63616 5.78288 5.80525 5.87678 5.92076 5.92254 6.07233 6.08948 6.15292 6.19594 6.23695 6.36285 6.41315 6.47011 6.50367 6.75464 6.83035 6.89211 7.03538 7.45996 7.62074 7.75929 7.80788 7.98799 8.07514 8.21518 8.37554 8.67578 9.02311 9.58567 11.04585 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.012264 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.954135 B = 2282.491840 C = 3937.282723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.063 3.937 4 C 0.061 3.939 5 N -0.535 5.535 6 C 0.063 3.937 7 C 0.223 3.777 8 H 0.008 0.992 9 C -0.506 4.506 10 H 0.065 0.935 11 C 0.061 3.939 12 N -0.886 5.886 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 N -0.539 5.539 18 C 0.036 3.964 19 C 0.081 3.919 20 H 0.037 0.963 21 C -0.141 4.141 22 C 0.068 3.932 23 H 0.078 0.922 24 H 0.026 0.974 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.010 0.990 32 H 0.259 0.741 33 H 0.009 0.991 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 0.048 6.785 7.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C -0.014 4.014 4 C -0.067 4.067 5 N -0.260 5.260 6 C -0.063 4.063 7 C 0.117 3.883 8 H 0.026 0.974 9 C -0.545 4.545 10 H 0.083 0.917 11 C -0.141 4.141 12 N -0.525 5.525 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 N -0.264 5.264 18 C -0.113 4.113 19 C -0.028 4.028 20 H 0.055 0.945 21 C -0.199 4.199 22 C -0.061 4.061 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.772 -0.124 6.829 7.803 hybrid contribution -0.704 0.726 -0.731 1.248 sum 3.068 0.602 6.099 6.853 Atomic orbital electron populations 1.22638 0.82176 1.02053 0.99299 1.87981 1.18544 1.26960 1.95147 1.22600 0.93549 0.85563 0.99692 1.22006 0.93558 0.96673 0.94451 1.62303 1.07272 1.53785 1.02644 1.22595 1.02518 0.93910 0.87326 1.19229 0.80519 0.95396 0.93195 0.97396 1.21193 0.91438 1.37438 1.04388 0.91691 1.24957 0.96982 0.95654 0.96520 1.69931 1.02818 1.46333 1.33382 0.86499 0.78944 0.79207 0.83112 1.19761 1.21111 1.21123 1.62264 1.13076 1.51028 1.00062 1.22236 0.98564 0.95756 0.94708 1.21548 0.93702 0.96060 0.91504 0.94533 1.21836 0.95526 1.01776 1.00790 1.22059 0.88961 0.98358 0.96676 0.90376 0.95533 0.93527 0.92000 0.94430 0.94611 0.91247 0.86582 0.97141 0.93107 0.97274 0.90473 0.93607 0.93173 0.92710 0.92383 0.95232 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.01 101.05 1.11 1.69 16 2 O -0.37 -7.31 10.61 -35.23 -0.37 -7.69 16 3 C 0.06 1.14 5.58 37.16 0.21 1.35 16 4 C 0.06 1.11 5.53 -3.82 -0.02 1.09 16 5 N -0.54 -11.47 4.73 -234.47 -1.11 -12.58 16 6 C 0.06 1.56 4.16 -3.76 -0.02 1.54 16 7 C 0.22 5.80 1.95 -68.81 -0.13 5.67 16 8 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 9 C -0.51 -13.84 7.83 -34.44 -0.27 -14.11 16 10 H 0.06 1.78 6.49 -52.49 -0.34 1.44 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -24.71 11.35 55.43 0.63 -24.08 16 13 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 N -0.54 -12.16 4.59 -228.15 -1.05 -13.20 16 18 C 0.04 0.73 8.80 60.06 0.53 1.26 16 19 C 0.08 1.59 2.56 -67.66 -0.17 1.42 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.14 -2.20 8.86 37.16 0.33 -1.87 16 22 C 0.07 1.30 4.90 -3.77 -0.02 1.28 16 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.26 6.09 -51.93 -0.32 0.94 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.12 3.08 3.94 -51.93 -0.20 2.88 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 1.67 6.04 -51.92 -0.31 1.36 16 35 H 0.05 0.80 6.49 -51.93 -0.34 0.47 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.81 6.45 -51.93 -0.34 0.48 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -29.37 306.40 -7.75 -37.12 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.90 Total: -1.12 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 1.45 Total: 0.88 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -1.53 Total: -49.86 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.37 Total: -7.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.37 -7.75 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251761542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.209 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds