Wall clock time and date at job start Mon Mar 30 2020 04:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99923 * 2 1 4 4 C 1.53002 * 109.46867 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47199 * 62.59685 * 4 3 2 6 6 C 1.46961 * 110.99938 * 52.36428 * 5 4 3 7 7 C 1.53053 * 109.36465 * 183.18873 * 6 5 4 8 8 H 1.08995 * 109.50453 * 61.57715 * 7 6 5 9 9 C 1.50692 * 109.49145 * 181.63250 * 7 6 5 10 10 H 1.08002 * 120.00676 * 119.88835 * 9 7 6 11 11 C 1.37877 * 120.00042 * 299.89403 * 9 7 6 12 12 N 1.31521 * 119.99993 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00379 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46829 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 119.99654 * 13 11 9 16 16 H 1.48503 * 109.47304 * 240.00073 * 13 11 9 17 17 N 1.46962 * 109.36422 * 301.60248 * 7 6 5 18 18 C 1.46899 * 111.00026 * 183.18797 * 17 7 6 19 19 C 1.46955 * 110.88040 * 59.31716 * 17 7 6 20 20 H 1.08996 * 109.50525 * 60.66237 * 19 17 7 21 21 C 1.53000 * 109.48602 * 180.71384 * 19 17 7 22 22 C 1.46953 * 111.00291 * 176.16374 * 5 4 3 23 23 H 1.09005 * 109.46830 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47282 * 299.99950 * 1 2 3 25 25 H 1.09001 * 109.47010 * 60.00234 * 1 2 3 26 26 H 1.08996 * 109.47385 * 299.99513 * 3 2 1 27 27 H 1.08997 * 109.47270 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.47191 * 182.59348 * 4 3 2 29 29 H 1.08999 * 109.47451 * 302.59190 * 4 3 2 30 30 H 1.08996 * 109.49143 * 303.15458 * 6 5 4 31 31 H 1.09000 * 109.48875 * 63.22526 * 6 5 4 32 32 H 0.97000 * 119.99897 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47340 * 292.24679 * 18 17 7 34 34 H 1.09009 * 109.46897 * 52.24300 * 18 17 7 35 35 H 1.08991 * 109.47272 * 172.24188 * 18 17 7 36 36 H 1.08997 * 109.47203 * 179.89556 * 21 19 17 37 37 H 1.09002 * 109.46872 * 299.88999 * 21 19 17 38 38 H 1.08998 * 109.47421 * 59.89308 * 21 19 17 39 39 H 1.08998 * 109.48969 * 296.78333 * 22 5 4 40 40 H 1.09006 * 109.48881 * 56.84220 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9738 0.5103 -1.2286 6 6 3.4098 1.1642 -2.4178 7 6 3.8242 0.3865 -3.6691 8 1 3.4259 -0.6267 -3.6164 9 6 3.2809 1.0772 -4.8933 10 1 3.9569 1.4407 -5.6531 11 6 1.9207 1.2453 -5.0434 12 7 1.0973 0.8024 -4.1184 13 14 1.2471 2.1021 -6.5605 14 1 2.3723 2.5034 -7.4428 15 1 0.3483 1.1755 -7.2943 16 1 0.4856 3.3092 -6.1502 17 7 5.2908 0.3334 -3.7465 18 6 5.7291 -0.3410 -4.9757 19 6 5.8547 -0.3205 -2.5573 20 1 5.4798 -1.3419 -2.4914 21 6 7.3809 -0.3427 -2.6624 22 6 5.4403 0.4572 -1.3060 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 -0.8900 27 1 1.6887 1.8464 0.8900 28 1 3.9787 2.1794 0.0471 29 1 3.8536 0.6043 0.8667 30 1 2.3226 1.1800 -2.3429 31 1 3.7851 2.1855 -2.4835 32 1 0.1403 0.9203 -4.2242 33 1 5.4600 -1.3961 -4.9271 34 1 5.2422 0.1189 -5.8358 35 1 6.8102 -0.2460 -5.0765 36 1 7.7989 -0.8261 -1.7795 37 1 7.6757 -0.8967 -3.5537 38 1 7.7554 0.6788 -2.7291 39 1 5.8386 1.4704 -1.3590 40 1 5.8334 -0.0424 -0.4205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251761542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:51 Heat of formation + Delta-G solvation = -47.144801 kcal Electronic energy + Delta-G solvation = -19144.579679 eV Core-core repulsion = 16380.002590 eV Total energy + Delta-G solvation = -2764.577089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43619 -38.67718 -36.36972 -35.26419 -32.72046 -31.16826 -28.93954 -27.37348 -27.20233 -26.62768 -24.30183 -23.03359 -21.58101 -20.35192 -18.44419 -17.44137 -17.21573 -16.91793 -16.27867 -16.11124 -15.68449 -15.50768 -15.22249 -14.82255 -14.59959 -13.90525 -13.64740 -13.47008 -13.07390 -12.94077 -12.88430 -12.69996 -12.55759 -12.41130 -12.36253 -11.98637 -11.95179 -11.84661 -11.76026 -11.06101 -10.82920 -10.53388 -10.41970 -9.07491 -8.90493 -8.09619 -6.23022 1.40119 1.41977 1.53770 2.41374 2.95252 3.11422 3.26293 3.39390 4.05427 4.11241 4.26169 4.37308 4.39583 4.44533 4.53772 4.56879 4.59307 4.67090 4.71771 4.72646 4.80791 4.84997 4.89159 4.99366 5.05054 5.09051 5.12193 5.21080 5.36208 5.52806 5.68641 5.71827 6.15598 6.24562 6.34191 6.42670 6.56082 6.78979 6.92123 7.45587 8.95055 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.012264 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.954135 B = 2282.491840 C = 3937.282723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.398 6.398 3 C 0.064 3.936 4 C 0.060 3.940 5 N -0.554 5.554 6 C 0.082 3.918 7 C 0.230 3.770 8 H -0.044 1.044 9 C -0.526 4.526 10 H 0.060 0.940 11 C 0.016 3.984 12 N -0.909 5.909 13 Si 0.959 3.041 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.279 1.279 17 N -0.546 5.546 18 C 0.039 3.961 19 C 0.075 3.925 20 H 0.015 0.985 21 C -0.130 4.130 22 C 0.068 3.932 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.094 0.906 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.002 0.998 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 0.535 7.711 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.317 6.317 3 C -0.013 4.013 4 C -0.068 4.068 5 N -0.279 5.279 6 C -0.045 4.045 7 C 0.123 3.877 8 H -0.027 1.027 9 C -0.564 4.564 10 H 0.078 0.922 11 C -0.184 4.184 12 N -0.548 5.548 13 Si 0.785 3.215 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.205 1.205 17 N -0.272 5.272 18 C -0.109 4.109 19 C -0.034 4.034 20 H 0.033 0.967 21 C -0.188 4.188 22 C -0.060 4.060 23 H 0.107 0.893 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.976 0.359 7.767 9.231 hybrid contribution -1.072 0.523 -0.969 1.537 sum 3.904 0.882 6.798 7.889 Atomic orbital electron populations 1.22751 0.80682 1.02998 0.99803 1.87924 1.20366 1.28065 1.95306 1.22634 0.93726 0.85042 0.99877 1.22148 0.93570 0.97654 0.93411 1.62238 1.08919 1.54097 1.02626 1.22152 1.01226 0.92684 0.88486 1.18976 0.82685 0.92377 0.93672 1.02697 1.21421 0.91951 1.37958 1.05111 0.92190 1.25718 0.97181 0.96170 0.99295 1.70070 1.03007 1.46855 1.34830 0.85492 0.78228 0.78172 0.79637 1.19252 1.20745 1.20477 1.62284 1.10817 1.52076 1.01990 1.22237 1.00447 0.94876 0.93338 1.21755 0.96438 0.94611 0.90601 0.96682 1.21757 0.91863 1.02549 1.02592 1.22170 0.87468 0.98710 0.97647 0.89322 0.92248 0.95666 0.95160 0.90733 0.93011 0.88989 0.88855 0.98977 0.93001 0.97922 0.92300 0.90047 0.90288 0.92056 0.91944 0.95046 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 11.01 113.37 1.25 2.35 16 2 O -0.40 -15.74 10.61 -148.98 -1.58 -17.32 16 3 C 0.06 2.28 5.58 71.98 0.40 2.68 16 4 C 0.06 2.07 5.53 86.30 0.48 2.55 16 5 N -0.55 -23.68 4.73 -895.72 -4.23 -27.91 16 6 C 0.08 4.19 4.16 86.31 0.36 4.55 16 7 C 0.23 12.46 1.95 44.17 0.09 12.54 16 8 H -0.04 -2.81 8.14 -2.39 -0.02 -2.83 16 9 C -0.53 -29.73 7.83 25.60 0.20 -29.53 16 10 H 0.06 3.37 6.49 -2.91 -0.02 3.35 16 11 C 0.02 0.89 5.30 84.65 0.45 1.34 16 12 N -0.91 -52.48 11.35 21.45 0.24 -52.24 16 13 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 N -0.55 -24.86 4.59 -875.73 -4.02 -28.88 16 18 C 0.04 1.61 8.80 127.69 1.12 2.73 16 19 C 0.07 2.87 2.56 44.92 0.11 2.99 16 20 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 21 C -0.13 -3.64 8.86 71.98 0.64 -3.01 16 22 C 0.07 2.49 4.90 86.31 0.42 2.91 16 23 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.03 1.27 6.09 -2.39 -0.01 1.25 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.09 5.19 3.94 -2.39 -0.01 5.18 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.06 2.60 6.04 -2.38 -0.01 2.58 16 35 H 0.08 2.72 6.49 -2.39 -0.02 2.70 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.64 6.45 -2.39 -0.02 1.62 16 38 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -65.89 306.40 -1.06 -66.94 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.99 Total: 11.33 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.52 Total: 2.10 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -8.01 Total: -109.03 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.58 Total: -17.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.89 -1.06 -66.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251761542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.799 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds