Wall clock time and date at job start Mon Mar 30 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00333 * 2 1 4 4 C 1.53001 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47494 * 67.18530 * 4 3 2 6 6 C 1.46957 * 111.00139 * 287.02029 * 5 4 3 7 7 C 1.53056 * 109.36770 * 176.81115 * 6 5 4 8 8 H 1.09000 * 109.48848 * 298.43676 * 7 6 5 9 9 C 1.50694 * 109.49009 * 178.36801 * 7 6 5 10 10 H 1.08002 * 119.99904 * 275.19363 * 9 7 6 11 11 C 1.37883 * 120.00147 * 95.20402 * 9 7 6 12 12 N 1.31513 * 119.99900 * 178.83503 * 11 9 7 13 13 Si 1.86797 * 119.99674 * 358.82719 * 11 9 7 14 14 H 1.48499 * 109.46890 * 85.47544 * 13 11 9 15 15 H 1.48495 * 109.47257 * 205.46978 * 13 11 9 16 16 H 1.48496 * 109.47467 * 325.47131 * 13 11 9 17 17 N 1.46957 * 109.36471 * 58.39619 * 7 6 5 18 18 C 1.46898 * 111.00335 * 176.81757 * 17 7 6 19 19 C 1.46957 * 110.88271 * 300.68506 * 17 7 6 20 20 C 1.46958 * 111.00476 * 163.21766 * 5 4 3 21 21 H 1.09004 * 109.50194 * 63.20802 * 20 5 4 22 22 C 1.53003 * 109.48769 * 303.16009 * 20 5 4 23 23 H 1.09000 * 109.47101 * 59.99777 * 1 2 3 24 24 H 1.08997 * 109.47569 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46894 * 300.00027 * 1 2 3 26 26 H 1.08997 * 109.47147 * 59.99654 * 3 2 1 27 27 H 1.08999 * 109.46965 * 300.00095 * 3 2 1 28 28 H 1.09002 * 109.46590 * 307.18835 * 4 3 2 29 29 H 1.08992 * 109.46919 * 187.18957 * 4 3 2 30 30 H 1.08994 * 109.49073 * 56.84302 * 6 5 4 31 31 H 1.08996 * 109.50481 * 296.78550 * 6 5 4 32 32 H 0.97002 * 119.99553 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.47507 * 176.99310 * 18 17 7 34 34 H 1.09002 * 109.46580 * 296.99132 * 18 17 7 35 35 H 1.08999 * 109.47167 * 56.98759 * 18 17 7 36 36 H 1.08998 * 109.49086 * 299.35190 * 19 17 7 37 37 H 1.09003 * 109.50959 * 179.29514 * 19 17 7 38 38 H 1.09004 * 109.47002 * 300.10738 * 22 20 5 39 39 H 1.08991 * 109.47170 * 180.10379 * 22 20 5 40 40 H 1.09006 * 109.46902 * 60.10295 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6108 -1.2775 6 6 3.6635 -0.8222 -1.3500 7 6 4.0703 -1.3633 -2.7228 8 1 3.5036 -0.8488 -3.4989 9 6 3.7831 -2.8412 -2.7860 10 1 4.5051 -3.5484 -2.4052 11 6 2.5986 -3.2908 -3.3301 12 7 2.3579 -4.5814 -3.4061 13 14 1.3357 -2.0664 -3.9590 14 1 1.6613 -1.6948 -5.3594 15 1 -0.0155 -2.6804 -3.9113 16 1 1.3574 -0.8508 -3.1064 17 7 5.5067 -1.1335 -2.9310 18 6 5.9521 -1.7072 -4.2079 19 6 5.8240 0.2996 -2.8584 20 6 5.4172 0.8405 -1.4857 21 1 5.9842 0.3264 -0.7096 22 6 5.7088 2.3411 -1.4215 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8489 0.5365 0.8178 29 1 3.9782 2.1722 0.1280 30 1 2.5927 -0.9654 -1.2055 31 1 4.2100 -1.3558 -0.5724 32 1 1.5244 -4.8976 -3.7885 33 1 7.0062 -1.4768 -4.3618 34 1 5.8156 -2.7885 -4.1876 35 1 5.3646 -1.2821 -5.0217 36 1 5.2772 0.8329 -3.6360 37 1 6.8948 0.4431 -3.0031 38 1 5.1410 2.8551 -2.1972 39 1 6.7740 2.5113 -1.5778 40 1 5.4190 2.7260 -0.4437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251782833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:16 Heat of formation + Delta-G solvation = -25.358494 kcal Electronic energy + Delta-G solvation = -19277.437134 eV Core-core repulsion = 16513.804771 eV Total energy + Delta-G solvation = -2763.632363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.03858 -37.39777 -35.01791 -32.81856 -31.55102 -29.97374 -27.62641 -26.73863 -25.67943 -23.85568 -22.89059 -21.63317 -20.15020 -18.76512 -16.90344 -16.30822 -15.99793 -15.12651 -14.92679 -14.63063 -14.23523 -13.89765 -13.62949 -13.30036 -12.86016 -12.68565 -12.32335 -11.92315 -11.80322 -11.62177 -11.50614 -11.24514 -11.01467 -10.91874 -10.77364 -10.51886 -10.42230 -10.00217 -9.83907 -9.63167 -9.17067 -9.02751 -8.49653 -7.68207 -7.20934 -6.03704 -4.02959 3.33189 3.40680 3.52265 4.07739 4.41544 4.48340 4.88706 5.23991 5.27401 5.35637 5.47870 5.53433 5.54278 5.62302 5.64476 5.71686 5.82741 5.92787 5.94198 6.03800 6.14274 6.20092 6.22798 6.29658 6.41510 6.54084 6.60514 6.76825 6.97392 7.09671 7.31892 7.43905 7.60318 7.76350 7.88284 8.10984 8.21909 8.73752 9.06778 9.60951 11.08821 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.012983 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.388063 B = 2156.144174 C = 3464.985496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.067 3.933 4 C 0.049 3.951 5 N -0.540 5.540 6 C 0.063 3.937 7 C 0.190 3.810 8 H 0.007 0.993 9 C -0.500 4.500 10 H 0.079 0.921 11 C 0.076 3.924 12 N -0.897 5.897 13 Si 0.867 3.133 14 H -0.281 1.281 15 H -0.290 1.290 16 H -0.253 1.253 17 N -0.539 5.539 18 C 0.044 3.956 19 C 0.062 3.938 20 C 0.083 3.917 21 H 0.043 0.957 22 C -0.145 4.145 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.010 0.990 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 13.606 4.971 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.010 4.010 4 C -0.079 4.079 5 N -0.266 5.266 6 C -0.064 4.064 7 C 0.083 3.917 8 H 0.024 0.976 9 C -0.539 4.539 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.535 5.535 13 Si 0.694 3.306 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.177 1.177 17 N -0.264 5.264 18 C -0.104 4.104 19 C -0.067 4.067 20 C -0.026 4.026 21 H 0.061 0.939 22 C -0.203 4.203 23 H 0.056 0.944 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.024 13.290 4.915 14.207 hybrid contribution -1.018 0.784 -0.408 1.348 sum 0.006 14.074 4.508 14.778 Atomic orbital electron populations 1.22706 0.82052 1.02729 0.99150 1.88055 1.18921 1.27403 1.94957 1.22562 0.93882 0.85165 0.99423 1.22208 0.93464 1.00112 0.92104 1.62404 1.14866 1.18356 1.30998 1.22883 1.02287 0.82618 0.98605 1.19743 0.83300 0.96428 0.92211 0.97580 1.20857 1.03931 0.89429 1.39702 0.90260 1.24973 0.97759 0.94882 0.95054 1.69896 1.25202 1.12985 1.45445 0.86993 0.80965 0.82845 0.79767 1.20742 1.21686 1.17685 1.62259 1.20275 1.10886 1.32970 1.22094 0.96947 1.02118 0.89246 1.22096 0.98925 0.90346 0.95347 1.21585 0.88925 0.94698 0.97385 0.93905 1.21913 1.00953 0.95812 1.01630 0.94428 0.89726 0.94694 0.93750 0.92865 0.94303 0.89722 0.88213 0.95295 0.92703 0.93955 0.89958 0.97160 0.95429 0.91862 0.92145 0.92538 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.76 7.69 -35.23 -0.27 -7.03 16 3 C 0.07 1.01 6.23 37.16 0.23 1.24 16 4 C 0.05 0.77 5.36 -3.83 -0.02 0.75 16 5 N -0.54 -10.29 4.47 -226.50 -1.01 -11.30 16 6 C 0.06 1.45 4.49 -3.76 -0.02 1.43 16 7 C 0.19 4.74 1.54 -68.81 -0.11 4.63 16 8 H 0.01 0.17 5.56 -51.93 -0.29 -0.12 16 9 C -0.50 -14.26 7.56 -34.44 -0.26 -14.52 16 10 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 11 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 12 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 13 Si 0.87 22.06 26.55 -169.99 -4.51 17.54 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.25 -6.31 6.56 56.52 0.37 -5.94 16 17 N -0.54 -12.03 4.78 -236.13 -1.13 -13.15 16 18 C 0.04 0.93 9.22 60.06 0.55 1.48 16 19 C 0.06 1.15 4.90 -3.77 -0.02 1.13 16 20 C 0.08 1.42 2.56 -67.66 -0.17 1.24 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.15 -1.88 8.93 37.16 0.33 -1.55 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.63 8.04 -51.93 -0.42 0.22 16 29 H 0.08 1.08 5.47 -51.93 -0.28 0.80 16 30 H 0.10 2.45 4.47 -51.93 -0.23 2.22 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.08 1.89 7.12 -51.93 -0.37 1.52 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.63 6.03 -51.93 -0.31 0.32 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -31.41 304.29 -7.01 -38.43 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.98 Total: -1.86 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 1.54 Total: -0.51 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -1.37 Total: -51.16 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.27 Total: -7.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.51 Total: 17.54 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.41 -7.01 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251782833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.071 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds