Wall clock time and date at job start Mon Mar 30 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00333 * 2 1 4 4 C 1.53001 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47494 * 67.18530 * 4 3 2 6 6 C 1.46957 * 111.00139 * 287.02029 * 5 4 3 7 7 C 1.53056 * 109.36770 * 176.81115 * 6 5 4 8 8 H 1.09000 * 109.48848 * 298.43676 * 7 6 5 9 9 C 1.50694 * 109.49009 * 178.36801 * 7 6 5 10 10 H 1.08002 * 119.99904 * 275.19363 * 9 7 6 11 11 C 1.37883 * 120.00147 * 95.20402 * 9 7 6 12 12 N 1.31513 * 119.99900 * 178.83503 * 11 9 7 13 13 Si 1.86797 * 119.99674 * 358.82719 * 11 9 7 14 14 H 1.48499 * 109.46890 * 85.47544 * 13 11 9 15 15 H 1.48495 * 109.47257 * 205.46978 * 13 11 9 16 16 H 1.48496 * 109.47467 * 325.47131 * 13 11 9 17 17 N 1.46957 * 109.36471 * 58.39619 * 7 6 5 18 18 C 1.46898 * 111.00335 * 176.81757 * 17 7 6 19 19 C 1.46957 * 110.88271 * 300.68506 * 17 7 6 20 20 C 1.46958 * 111.00476 * 163.21766 * 5 4 3 21 21 H 1.09004 * 109.50194 * 63.20802 * 20 5 4 22 22 C 1.53003 * 109.48769 * 303.16009 * 20 5 4 23 23 H 1.09000 * 109.47101 * 59.99777 * 1 2 3 24 24 H 1.08997 * 109.47569 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46894 * 300.00027 * 1 2 3 26 26 H 1.08997 * 109.47147 * 59.99654 * 3 2 1 27 27 H 1.08999 * 109.46965 * 300.00095 * 3 2 1 28 28 H 1.09002 * 109.46590 * 307.18835 * 4 3 2 29 29 H 1.08992 * 109.46919 * 187.18957 * 4 3 2 30 30 H 1.08994 * 109.49073 * 56.84302 * 6 5 4 31 31 H 1.08996 * 109.50481 * 296.78550 * 6 5 4 32 32 H 0.97002 * 119.99553 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.47507 * 176.99310 * 18 17 7 34 34 H 1.09002 * 109.46580 * 296.99132 * 18 17 7 35 35 H 1.08999 * 109.47167 * 56.98759 * 18 17 7 36 36 H 1.08998 * 109.49086 * 299.35190 * 19 17 7 37 37 H 1.09003 * 109.50959 * 179.29514 * 19 17 7 38 38 H 1.09004 * 109.47002 * 300.10738 * 22 20 5 39 39 H 1.08991 * 109.47170 * 180.10379 * 22 20 5 40 40 H 1.09006 * 109.46902 * 60.10295 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6108 -1.2775 6 6 3.6635 -0.8222 -1.3500 7 6 4.0703 -1.3633 -2.7228 8 1 3.5036 -0.8488 -3.4989 9 6 3.7831 -2.8412 -2.7860 10 1 4.5051 -3.5484 -2.4052 11 6 2.5986 -3.2908 -3.3301 12 7 2.3579 -4.5814 -3.4061 13 14 1.3357 -2.0664 -3.9590 14 1 1.6613 -1.6948 -5.3594 15 1 -0.0155 -2.6804 -3.9113 16 1 1.3574 -0.8508 -3.1064 17 7 5.5067 -1.1335 -2.9310 18 6 5.9521 -1.7072 -4.2079 19 6 5.8240 0.2996 -2.8584 20 6 5.4172 0.8405 -1.4857 21 1 5.9842 0.3264 -0.7096 22 6 5.7088 2.3411 -1.4215 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8489 0.5365 0.8178 29 1 3.9782 2.1722 0.1280 30 1 2.5927 -0.9654 -1.2055 31 1 4.2100 -1.3558 -0.5724 32 1 1.5244 -4.8976 -3.7885 33 1 7.0062 -1.4768 -4.3618 34 1 5.8156 -2.7885 -4.1876 35 1 5.3646 -1.2821 -5.0217 36 1 5.2772 0.8329 -3.6360 37 1 6.8948 0.4431 -3.0031 38 1 5.1410 2.8551 -2.1972 39 1 6.7740 2.5113 -1.5778 40 1 5.4190 2.7260 -0.4437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251782833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:16 Heat of formation + Delta-G solvation = -50.167897 kcal Electronic energy + Delta-G solvation = -19278.512950 eV Core-core repulsion = 16513.804771 eV Total energy + Delta-G solvation = -2764.708180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56031 -38.71044 -36.60344 -34.80952 -33.19959 -31.48382 -29.24334 -28.13964 -26.96496 -25.68563 -24.49148 -23.01395 -21.72404 -20.44516 -19.06193 -17.60372 -17.31949 -16.68215 -16.32894 -16.07544 -15.92271 -15.62945 -15.24698 -14.84389 -14.58924 -14.31729 -13.84373 -13.36372 -13.15044 -13.02729 -12.91137 -12.74425 -12.52054 -12.49323 -12.25519 -12.08261 -12.01193 -11.82643 -11.68911 -11.32834 -11.01807 -10.73924 -10.38527 -9.21045 -8.98236 -8.30794 -6.33927 1.28370 1.31576 1.48038 2.32655 2.90364 2.94818 3.14390 3.36115 4.00441 4.12743 4.23652 4.28635 4.38866 4.41521 4.49795 4.51213 4.56900 4.60251 4.62436 4.72339 4.78990 4.82212 4.85067 4.88954 4.95548 5.02506 5.14462 5.20947 5.24326 5.38837 5.44430 5.66650 6.06876 6.20348 6.23582 6.35859 6.48471 6.68890 6.77728 7.33341 8.85793 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.012983 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.388063 B = 2156.144174 C = 3464.985496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.063 3.937 4 C 0.048 3.952 5 N -0.546 5.546 6 C 0.079 3.921 7 C 0.197 3.803 8 H -0.006 1.006 9 C -0.500 4.500 10 H 0.033 0.967 11 C 0.023 3.977 12 N -0.942 5.942 13 Si 0.932 3.068 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.245 1.245 17 N -0.557 5.557 18 C 0.049 3.951 19 C 0.060 3.940 20 C 0.078 3.922 21 H 0.032 0.968 22 C -0.133 4.133 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.001 0.999 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.026 0.974 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 17.185 5.341 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.013 4.013 4 C -0.080 4.080 5 N -0.271 5.271 6 C -0.049 4.049 7 C 0.089 3.911 8 H 0.012 0.988 9 C -0.539 4.539 10 H 0.051 0.949 11 C -0.175 4.175 12 N -0.582 5.582 13 Si 0.757 3.243 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.168 1.168 17 N -0.281 5.281 18 C -0.100 4.100 19 C -0.068 4.068 20 C -0.030 4.030 21 H 0.050 0.950 22 C -0.191 4.191 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.174 16.897 5.294 17.746 hybrid contribution -0.946 -0.354 -0.474 1.116 sum 0.228 16.543 4.820 17.232 Atomic orbital electron populations 1.22834 0.80630 1.02838 1.00769 1.87992 1.20730 1.29396 1.95249 1.22729 0.93218 0.84350 1.01025 1.22407 0.94331 1.01344 0.89883 1.62361 1.16372 1.15108 1.33266 1.22430 1.00888 0.85368 0.96241 1.19528 0.84989 0.93622 0.92963 0.98814 1.20972 1.02929 0.91086 1.38891 0.94858 1.25728 0.99777 0.96531 0.95456 1.70029 1.26121 1.14977 1.47088 0.85958 0.78502 0.80646 0.79205 1.20205 1.20836 1.16844 1.62166 1.18308 1.13994 1.33674 1.22044 0.99208 0.99954 0.88755 1.22278 1.00716 0.87498 0.96336 1.21749 0.87534 0.97728 0.96005 0.94995 1.21838 1.02524 0.91915 1.02835 0.94170 0.90521 0.91622 0.90225 0.92996 0.95317 0.86022 0.89723 0.98031 0.92471 0.90148 0.93331 0.97416 0.95612 0.88936 0.91957 0.90331 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.43 7.69 -148.98 -1.15 -15.58 16 3 C 0.06 1.73 6.23 71.98 0.45 2.18 16 4 C 0.05 1.36 5.36 86.30 0.46 1.82 16 5 N -0.55 -19.78 4.47 -870.51 -3.90 -23.68 16 6 C 0.08 3.66 4.49 86.31 0.39 4.05 16 7 C 0.20 9.95 1.54 44.18 0.07 10.02 16 8 H -0.01 -0.30 5.56 -2.39 -0.01 -0.31 16 9 C -0.50 -29.83 7.56 25.60 0.19 -29.64 16 10 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 11 C 0.02 1.40 5.47 84.66 0.46 1.87 16 12 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 13 Si 0.93 46.52 26.55 68.60 1.82 48.34 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.24 -11.82 6.56 99.48 0.65 -11.16 16 17 N -0.56 -24.74 4.78 -900.99 -4.30 -29.04 16 18 C 0.05 2.03 9.22 127.69 1.18 3.21 16 19 C 0.06 2.08 4.90 86.31 0.42 2.50 16 20 C 0.08 2.47 2.56 44.92 0.12 2.59 16 21 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 22 C -0.13 -2.83 8.93 71.98 0.64 -2.19 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 0.89 8.04 -2.39 -0.02 0.87 16 29 H 0.12 2.54 5.47 -2.39 -0.01 2.53 16 30 H 0.08 4.20 4.47 -2.39 -0.01 4.19 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.08 2.70 8.08 -2.39 -0.02 2.68 16 34 H 0.05 2.32 7.12 -2.39 -0.02 2.30 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 2.67 8.10 -2.39 -0.02 2.65 16 38 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.30 6.03 -2.38 -0.01 1.28 16 Total: -1.00 -71.47 304.29 -0.66 -72.14 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.93 Total: 9.11 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.63 Total: -1.64 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -7.90 Total: -112.37 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.15 Total: -15.58 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.82 Total: 48.34 kcal Total: -71.47 -0.66 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251782833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.968 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds