Wall clock time and date at job start Mon Mar 30 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 C 1.52995 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47425 * 63.21099 * 4 3 2 6 6 C 1.46965 * 111.00192 * 189.75228 * 5 4 3 7 7 C 1.53052 * 109.36499 * 176.81023 * 6 5 4 8 8 H 1.09000 * 109.48899 * 298.43397 * 7 6 5 9 9 C 1.50698 * 109.48710 * 178.38834 * 7 6 5 10 10 H 1.07999 * 120.00045 * 274.78856 * 9 7 6 11 11 C 1.37880 * 119.99821 * 94.79487 * 9 7 6 12 12 N 1.31509 * 119.99854 * 354.52666 * 11 9 7 13 13 Si 1.86803 * 120.00007 * 174.53385 * 11 9 7 14 14 H 1.48496 * 109.47186 * 59.99261 * 13 11 9 15 15 H 1.48498 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46593 * 299.99418 * 13 11 9 17 17 N 1.46962 * 109.36409 * 58.40117 * 7 6 5 18 18 C 1.46890 * 110.99990 * 176.80960 * 17 7 6 19 19 C 1.46957 * 110.89913 * 300.68948 * 17 7 6 20 20 C 1.46955 * 111.00432 * 65.95350 * 5 4 3 21 21 H 1.09007 * 109.48600 * 303.15837 * 20 5 4 22 22 C 1.52997 * 109.48832 * 63.19499 * 20 5 4 23 23 H 1.09006 * 109.46236 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47367 * 300.00255 * 1 2 3 25 25 H 1.08994 * 109.46993 * 60.00971 * 1 2 3 26 26 H 1.08999 * 109.47268 * 59.99519 * 3 2 1 27 27 H 1.09001 * 109.46853 * 299.99509 * 3 2 1 28 28 H 1.09007 * 109.47120 * 303.20755 * 4 3 2 29 29 H 1.09002 * 109.47480 * 183.21564 * 4 3 2 30 30 H 1.08996 * 109.48482 * 296.77670 * 6 5 4 31 31 H 1.09001 * 109.48678 * 56.82103 * 6 5 4 32 32 H 0.96999 * 119.99879 * 180.02562 * 12 11 9 33 33 H 1.09005 * 109.47278 * 63.13260 * 18 17 7 34 34 H 1.09004 * 109.47331 * 183.13126 * 18 17 7 35 35 H 1.09001 * 109.47272 * 303.13149 * 18 17 7 36 36 H 1.08997 * 109.46921 * 299.33278 * 19 17 7 37 37 H 1.09003 * 109.50808 * 179.26438 * 19 17 7 38 38 H 1.09004 * 109.46861 * 59.96296 * 22 20 5 39 39 H 1.08999 * 109.47100 * 179.97438 * 22 20 5 40 40 H 1.09000 * 109.47711 * 299.96511 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9738 0.5242 -1.2372 6 6 5.4018 0.1823 -1.1740 7 6 5.7995 -0.5730 -2.4443 8 1 5.2296 -1.4998 -2.5098 9 6 7.2721 -0.8903 -2.4003 10 1 7.9922 -0.1595 -2.7376 11 6 7.6999 -2.1135 -1.9294 12 7 6.8336 -2.9612 -1.4190 13 14 9.5101 -2.5666 -2.0163 14 1 10.3043 -1.5839 -1.2360 15 1 9.7080 -3.9251 -1.4502 16 1 9.9567 -2.5511 -3.4325 17 7 5.5125 0.2631 -3.6184 18 6 5.9510 -0.3976 -4.8549 19 6 4.0848 0.6053 -3.6819 20 6 3.6869 1.3601 -2.4112 21 1 2.6217 1.5893 -2.4429 22 6 4.4864 2.6613 -2.3190 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8536 0.5949 0.8590 29 1 3.9786 2.1789 0.0570 30 1 5.9911 1.0958 -1.0944 31 1 5.5868 -0.4469 -0.3033 32 1 7.1347 -3.8216 -1.0874 33 1 5.3867 -1.3198 -4.9939 34 1 5.7776 0.2657 -5.7024 35 1 7.0139 -0.6289 -4.7861 36 1 3.4955 -0.3081 -3.7618 37 1 3.8998 1.2352 -4.5520 38 1 5.5516 2.4318 -2.2874 39 1 4.2738 3.2809 -3.1902 40 1 4.2035 3.1983 -1.4136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251782835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:20 Heat of formation + Delta-G solvation = -26.796912 kcal Electronic energy + Delta-G solvation = -18995.431532 eV Core-core repulsion = 16231.736794 eV Total energy + Delta-G solvation = -2763.694738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.07253 -37.39002 -34.86108 -32.78867 -30.84511 -29.89940 -27.23058 -26.47221 -25.64518 -24.44504 -22.58492 -22.20530 -20.29229 -17.70967 -16.49664 -16.22855 -16.01367 -15.15118 -14.77408 -14.57248 -14.36240 -13.78234 -13.56003 -13.11834 -12.98453 -12.56814 -12.06300 -11.86357 -11.68054 -11.45018 -11.29679 -11.07692 -10.95621 -10.90050 -10.77789 -10.46034 -10.31302 -10.07013 -9.72847 -9.56128 -9.36028 -8.96681 -8.43551 -7.42814 -7.00157 -6.00149 -4.05867 3.32964 3.38178 3.40575 4.05755 4.41283 4.63414 5.10972 5.24290 5.33801 5.39558 5.48582 5.50459 5.56138 5.59817 5.74266 5.78758 5.89183 5.93841 6.14209 6.20055 6.30123 6.37066 6.39441 6.53372 6.58797 6.63675 6.82762 6.98805 7.03375 7.35109 7.43590 7.66824 7.84533 7.88236 7.99508 8.16971 8.34251 8.70845 9.10631 9.60300 11.06908 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.007316 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.731039 B = 3826.379163 C = 4319.210381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.068 3.932 4 C 0.052 3.948 5 N -0.526 5.526 6 C 0.077 3.923 7 C 0.211 3.789 8 H 0.037 0.963 9 C -0.508 4.508 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 N -0.543 5.543 18 C 0.046 3.954 19 C 0.063 3.937 20 C 0.085 3.915 21 H 0.067 0.933 22 C -0.177 4.177 23 H 0.082 0.918 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.262 0.738 33 H 0.009 0.991 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 8.386 0.505 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.009 4.009 4 C -0.077 4.077 5 N -0.250 5.250 6 C -0.051 4.051 7 C 0.104 3.896 8 H 0.055 0.945 9 C -0.547 4.547 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.522 5.522 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 N -0.268 5.268 18 C -0.103 4.103 19 C -0.066 4.066 20 C -0.024 4.024 21 H 0.085 0.915 22 C -0.235 4.235 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.012 8.006 0.607 12.070 hybrid contribution 0.652 -0.055 0.046 0.656 sum -8.360 7.952 0.653 11.556 Atomic orbital electron populations 1.22688 0.82481 1.02347 0.99082 1.88098 1.18156 1.27254 1.95077 1.22592 0.94435 0.84945 0.98958 1.22116 0.92605 0.97944 0.95011 1.62480 1.20916 1.41258 1.00358 1.22444 0.83173 0.97966 1.01486 1.19385 0.96013 0.90352 0.83801 0.94528 1.20944 0.91247 0.99853 1.42685 0.92196 1.25025 0.97567 0.96365 0.94879 1.69980 1.33927 1.08629 1.39642 0.86651 0.85421 0.77459 0.78405 1.20217 1.21386 1.20221 1.62311 1.13614 1.46591 1.04332 1.22046 1.02087 0.95256 0.90904 1.22009 0.91002 0.98001 0.95563 1.21657 0.97745 0.91401 0.91571 0.91479 1.22332 1.03495 0.97777 0.99926 0.89969 0.94878 0.94636 0.93948 0.93657 0.90376 0.93642 0.95796 0.91089 0.92798 0.97213 0.94378 0.90446 0.95358 0.92399 0.90363 0.93216 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.15 10.62 -35.23 -0.37 -6.53 16 3 C 0.07 0.99 5.97 37.16 0.22 1.21 16 4 C 0.05 0.87 5.16 -3.83 -0.02 0.85 16 5 N -0.53 -10.63 4.58 -226.49 -1.04 -11.67 16 6 C 0.08 1.79 4.49 -3.76 -0.02 1.77 16 7 C 0.21 5.37 2.03 -68.80 -0.14 5.24 16 8 H 0.04 1.09 7.40 -51.93 -0.38 0.71 16 9 C -0.51 -13.83 6.90 -34.44 -0.24 -14.07 16 10 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 11 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 12 N -0.88 -25.71 12.85 55.43 0.71 -25.00 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 N -0.54 -12.09 4.09 -236.13 -0.97 -13.06 16 18 C 0.05 0.96 9.33 60.06 0.56 1.52 16 19 C 0.06 1.24 5.05 -3.77 -0.02 1.22 16 20 C 0.09 1.54 2.77 -67.66 -0.19 1.35 16 21 H 0.07 1.10 6.27 -51.93 -0.33 0.78 16 22 C -0.18 -2.91 8.38 37.16 0.31 -2.60 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.62 6.34 -51.93 -0.33 0.30 16 28 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 29 H 0.05 0.70 6.11 -51.93 -0.32 0.39 16 30 H 0.02 0.55 6.34 -51.93 -0.33 0.23 16 31 H 0.07 1.82 8.07 -51.93 -0.42 1.40 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.73 6.88 -51.93 -0.36 1.38 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.50 5.94 -51.93 -0.31 1.19 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.61 6.36 -51.93 -0.33 0.28 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -29.59 306.70 -7.45 -37.03 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.87 Total: -1.28 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 1.49 Total: -0.32 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -1.29 Total: -49.73 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.37 Total: -6.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.59 -7.45 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251782835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.237 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds