Wall clock time and date at job start Mon Mar 30 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 C 1.52995 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47425 * 63.21099 * 4 3 2 6 6 C 1.46965 * 111.00192 * 189.75228 * 5 4 3 7 7 C 1.53052 * 109.36499 * 176.81023 * 6 5 4 8 8 H 1.09000 * 109.48899 * 298.43397 * 7 6 5 9 9 C 1.50698 * 109.48710 * 178.38834 * 7 6 5 10 10 H 1.07999 * 120.00045 * 274.78856 * 9 7 6 11 11 C 1.37880 * 119.99821 * 94.79487 * 9 7 6 12 12 N 1.31509 * 119.99854 * 354.52666 * 11 9 7 13 13 Si 1.86803 * 120.00007 * 174.53385 * 11 9 7 14 14 H 1.48496 * 109.47186 * 59.99261 * 13 11 9 15 15 H 1.48498 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46593 * 299.99418 * 13 11 9 17 17 N 1.46962 * 109.36409 * 58.40117 * 7 6 5 18 18 C 1.46890 * 110.99990 * 176.80960 * 17 7 6 19 19 C 1.46957 * 110.89913 * 300.68948 * 17 7 6 20 20 C 1.46955 * 111.00432 * 65.95350 * 5 4 3 21 21 H 1.09007 * 109.48600 * 303.15837 * 20 5 4 22 22 C 1.52997 * 109.48832 * 63.19499 * 20 5 4 23 23 H 1.09006 * 109.46236 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47367 * 300.00255 * 1 2 3 25 25 H 1.08994 * 109.46993 * 60.00971 * 1 2 3 26 26 H 1.08999 * 109.47268 * 59.99519 * 3 2 1 27 27 H 1.09001 * 109.46853 * 299.99509 * 3 2 1 28 28 H 1.09007 * 109.47120 * 303.20755 * 4 3 2 29 29 H 1.09002 * 109.47480 * 183.21564 * 4 3 2 30 30 H 1.08996 * 109.48482 * 296.77670 * 6 5 4 31 31 H 1.09001 * 109.48678 * 56.82103 * 6 5 4 32 32 H 0.96999 * 119.99879 * 180.02562 * 12 11 9 33 33 H 1.09005 * 109.47278 * 63.13260 * 18 17 7 34 34 H 1.09004 * 109.47331 * 183.13126 * 18 17 7 35 35 H 1.09001 * 109.47272 * 303.13149 * 18 17 7 36 36 H 1.08997 * 109.46921 * 299.33278 * 19 17 7 37 37 H 1.09003 * 109.50808 * 179.26438 * 19 17 7 38 38 H 1.09004 * 109.46861 * 59.96296 * 22 20 5 39 39 H 1.08999 * 109.47100 * 179.97438 * 22 20 5 40 40 H 1.09000 * 109.47711 * 299.96511 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9738 0.5242 -1.2372 6 6 5.4018 0.1823 -1.1740 7 6 5.7995 -0.5730 -2.4443 8 1 5.2296 -1.4998 -2.5098 9 6 7.2721 -0.8903 -2.4003 10 1 7.9922 -0.1595 -2.7376 11 6 7.6999 -2.1135 -1.9294 12 7 6.8336 -2.9612 -1.4190 13 14 9.5101 -2.5666 -2.0163 14 1 10.3043 -1.5839 -1.2360 15 1 9.7080 -3.9251 -1.4502 16 1 9.9567 -2.5511 -3.4325 17 7 5.5125 0.2631 -3.6184 18 6 5.9510 -0.3976 -4.8549 19 6 4.0848 0.6053 -3.6819 20 6 3.6869 1.3601 -2.4112 21 1 2.6217 1.5893 -2.4429 22 6 4.4864 2.6613 -2.3190 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8536 0.5949 0.8590 29 1 3.9786 2.1789 0.0570 30 1 5.9911 1.0958 -1.0944 31 1 5.5868 -0.4469 -0.3033 32 1 7.1347 -3.8216 -1.0874 33 1 5.3867 -1.3198 -4.9939 34 1 5.7776 0.2657 -5.7024 35 1 7.0139 -0.6289 -4.7861 36 1 3.4955 -0.3081 -3.7618 37 1 3.8998 1.2352 -4.5520 38 1 5.5516 2.4318 -2.2874 39 1 4.2738 3.2809 -3.1902 40 1 4.2035 3.1983 -1.4136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251782835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:19 Heat of formation + Delta-G solvation = -48.985258 kcal Electronic energy + Delta-G solvation = -18996.393691 eV Core-core repulsion = 16231.736794 eV Total energy + Delta-G solvation = -2764.656897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65194 -38.63128 -36.50251 -34.78493 -32.47565 -31.42813 -28.85503 -27.89616 -26.88812 -26.29385 -24.14600 -23.83394 -21.94657 -19.35385 -18.51125 -17.52211 -17.38894 -16.65459 -16.45583 -15.89514 -15.77233 -15.46576 -15.33090 -14.73546 -14.45552 -14.14957 -13.65574 -13.42695 -13.08947 -12.92370 -12.82500 -12.69925 -12.62378 -12.42181 -12.26680 -12.19111 -11.87971 -11.67073 -11.64324 -11.31254 -10.90135 -10.51775 -10.46002 -9.02511 -8.82704 -8.12406 -6.25229 1.42034 1.43771 1.51928 2.41750 2.96325 3.06236 3.25807 3.51241 4.05619 4.06501 4.25699 4.34222 4.40630 4.46549 4.54930 4.58519 4.63536 4.68252 4.72922 4.78094 4.80088 4.87424 4.88523 4.90859 5.01810 5.05282 5.16123 5.22133 5.40181 5.59078 5.60883 5.74085 6.08824 6.26582 6.35443 6.41179 6.57219 6.79992 6.98050 7.45154 8.94574 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.007316 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.731039 B = 3826.379163 C = 4319.210381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.072 3.928 4 C 0.050 3.950 5 N -0.545 5.545 6 C 0.096 3.904 7 C 0.218 3.782 8 H -0.016 1.016 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.014 3.986 12 N -0.922 5.922 13 Si 0.959 3.041 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.268 1.268 17 N -0.543 5.543 18 C 0.048 3.952 19 C 0.060 3.940 20 C 0.085 3.915 21 H 0.093 0.907 22 C -0.166 4.166 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.261 0.739 33 H -0.006 1.006 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 10.591 0.002 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.004 4.004 4 C -0.078 4.078 5 N -0.270 5.270 6 C -0.033 4.033 7 C 0.111 3.889 8 H 0.002 0.998 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.186 4.186 12 N -0.561 5.561 13 Si 0.784 3.216 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.194 1.194 17 N -0.268 5.268 18 C -0.100 4.100 19 C -0.068 4.068 20 C -0.023 4.023 21 H 0.111 0.889 22 C -0.225 4.225 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.013 0.987 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.746 10.240 0.093 14.137 hybrid contribution 0.775 -0.710 0.173 1.066 sum -8.971 9.530 0.266 13.090 Atomic orbital electron populations 1.22863 0.80256 1.03144 1.00692 1.88041 1.20759 1.28722 1.95442 1.22611 0.92226 0.84612 1.00991 1.22207 0.94823 0.98107 0.92672 1.62357 1.18326 1.43556 1.02748 1.21949 0.85757 0.96837 0.98710 1.19124 0.94516 0.89057 0.86248 0.99794 1.21184 0.92212 0.99971 1.42192 0.92572 1.25818 1.01922 0.96300 0.94514 1.70133 1.36032 1.08998 1.40956 0.85603 0.80122 0.77152 0.78729 1.19369 1.21213 1.19351 1.62288 1.15735 1.45208 1.03572 1.22054 1.00599 0.95595 0.91767 1.22179 0.88696 0.97870 0.98064 1.21767 0.99438 0.91484 0.89650 0.88920 1.22207 1.01058 0.97147 1.02047 0.89770 0.92743 0.93398 0.90947 0.92323 0.92221 0.91710 0.95763 0.94795 0.92967 0.98705 0.90497 0.92317 0.97562 0.89038 0.93381 0.90886 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.21 10.62 -148.98 -1.58 -14.79 16 3 C 0.07 1.92 5.97 71.98 0.43 2.35 16 4 C 0.05 1.62 5.16 86.30 0.45 2.06 16 5 N -0.55 -21.99 4.58 -870.49 -3.99 -25.98 16 6 C 0.10 4.63 4.49 86.31 0.39 5.02 16 7 C 0.22 11.53 2.03 44.17 0.09 11.62 16 8 H -0.02 -1.00 7.40 -2.39 -0.02 -1.01 16 9 C -0.52 -28.97 6.90 25.60 0.18 -28.79 16 10 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 11 C 0.01 0.80 5.45 84.66 0.46 1.26 16 12 N -0.92 -55.95 12.85 21.45 0.28 -55.68 16 13 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 N -0.54 -24.17 4.09 -900.96 -3.69 -27.86 16 18 C 0.05 2.02 9.33 127.69 1.19 3.22 16 19 C 0.06 2.28 5.05 86.31 0.44 2.72 16 20 C 0.08 2.88 2.77 44.92 0.12 3.01 16 21 H 0.09 2.72 6.27 -2.38 -0.01 2.70 16 22 C -0.17 -4.95 8.38 71.98 0.60 -4.35 16 23 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.39 6.34 -2.39 -0.02 1.38 16 28 H 0.06 2.13 8.03 -2.38 -0.02 2.11 16 29 H 0.07 1.85 6.11 -2.39 -0.01 1.83 16 30 H 0.02 1.15 6.34 -2.39 -0.02 1.14 16 31 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H -0.01 -0.25 8.14 -2.38 -0.02 -0.27 16 34 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.06 2.65 6.88 -2.39 -0.02 2.63 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.05 1.74 5.94 -2.38 -0.01 1.73 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.56 6.36 -2.39 -0.02 1.55 16 Total: -1.00 -66.99 306.70 -0.37 -67.36 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.99 Total: 10.61 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.59 Total: -0.06 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -7.40 Total: -109.52 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.58 Total: -14.79 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.99 -0.37 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251782835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.380 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds