Wall clock time and date at job start Mon Mar 30 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99819 * 2 1 4 4 C 1.53002 * 109.46662 * 174.93287 * 3 2 1 5 5 N 1.46900 * 109.47535 * 67.27365 * 4 3 2 6 6 C 1.46959 * 110.99777 * 293.52894 * 5 4 3 7 7 H 1.08998 * 109.48984 * 63.21645 * 6 5 4 8 8 C 1.50704 * 109.48835 * 303.17411 * 6 5 4 9 9 H 1.08002 * 119.99886 * 0.04949 * 8 6 5 10 10 C 1.37875 * 120.00015 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99923 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00078 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46945 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47229 * 120.00408 * 12 10 8 15 15 H 1.48504 * 109.47317 * 240.00366 * 12 10 8 16 16 C 1.53044 * 109.38252 * 183.19788 * 6 5 4 17 17 N 1.46957 * 109.36591 * 301.58689 * 16 6 5 18 18 C 1.46897 * 111.00180 * 183.18630 * 17 16 6 19 19 C 1.46958 * 110.87880 * 59.31869 * 17 16 6 20 20 C 1.46999 * 111.02787 * 57.31724 * 5 4 3 21 21 H 1.09004 * 109.49893 * 296.80386 * 20 5 4 22 22 C 1.52996 * 109.48473 * 56.85198 * 20 5 4 23 23 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46844 * 299.99414 * 1 2 3 25 25 H 1.08995 * 109.47131 * 59.99975 * 1 2 3 26 26 H 1.08996 * 109.47215 * 54.93607 * 3 2 1 27 27 H 1.09001 * 109.47102 * 294.92574 * 3 2 1 28 28 H 1.09005 * 109.47242 * 307.27150 * 4 3 2 29 29 H 1.08997 * 109.46740 * 187.27687 * 4 3 2 30 30 H 0.97005 * 119.99647 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.49125 * 61.55424 * 16 6 5 32 32 H 1.09003 * 109.49286 * 181.59519 * 16 6 5 33 33 H 1.09003 * 109.47295 * 63.95790 * 18 17 16 34 34 H 1.08998 * 109.47022 * 183.95585 * 18 17 16 35 35 H 1.09004 * 109.47203 * 303.95191 * 18 17 16 36 36 H 1.08999 * 109.49265 * 60.64846 * 19 17 16 37 37 H 1.08999 * 109.48989 * 180.69512 * 19 17 16 38 38 H 1.08998 * 109.46838 * 173.36448 * 22 20 5 39 39 H 1.09000 * 109.47273 * 293.37169 * 22 20 5 40 40 H 1.08999 * 109.46813 * 53.36935 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5303 1.1868 0.1274 5 7 4.0771 0.5699 -1.0885 6 6 3.6357 -0.8261 -1.2148 7 1 2.5515 -0.8564 -1.3222 8 6 4.0407 -1.5949 0.0165 9 1 4.5721 -1.0964 0.8138 10 6 3.7325 -2.9343 0.1254 11 7 3.0855 -3.5412 -0.8455 12 14 4.2351 -3.8873 1.6513 13 1 4.9466 -2.9816 2.5886 14 1 3.0241 -4.4336 2.3150 15 1 5.1336 -5.0044 1.2638 16 6 4.2887 -1.4557 -2.4475 17 7 3.9232 -0.6812 -3.6417 18 6 4.4699 -1.2986 -4.8574 19 6 4.3646 0.7149 -3.5159 20 6 3.7116 1.3445 -2.2832 21 1 2.6281 1.3392 -2.4028 22 6 4.2007 2.7857 -2.1263 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6187 1.8775 0.8411 27 1 1.7623 1.8135 -0.9320 28 1 3.7754 0.5680 0.9906 29 1 3.9625 2.1790 0.2573 30 1 2.8690 -4.4837 -0.7690 31 1 5.3721 -1.4501 -2.3280 32 1 3.9406 -2.4826 -2.5591 33 1 4.0206 -2.2815 -4.9993 34 1 4.2445 -0.6685 -5.7178 35 1 5.5502 -1.4038 -4.7572 36 1 5.4488 0.7453 -3.4085 37 1 4.0717 1.2706 -4.4067 38 1 4.0354 3.3287 -3.0568 39 1 3.6504 3.2704 -1.3199 40 1 5.2649 2.7845 -1.8905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251801439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:50 Heat of formation + Delta-G solvation = -18.591942 kcal Electronic energy + Delta-G solvation = -19609.214242 eV Core-core repulsion = 16845.875299 eV Total energy + Delta-G solvation = -2763.338944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.98730 -36.85383 -34.66097 -33.18529 -30.97458 -29.34799 -26.59686 -26.36189 -25.31269 -25.05972 -22.60573 -21.15460 -20.31394 -18.32701 -16.24005 -15.86570 -15.70507 -14.84930 -14.69573 -14.34128 -14.12711 -13.87733 -13.42639 -13.16485 -12.51654 -12.13190 -11.90008 -11.86578 -11.64706 -11.60255 -11.20992 -10.94111 -10.92832 -10.72825 -10.51579 -10.43302 -10.33198 -9.95411 -9.80669 -9.37254 -8.82415 -8.70963 -8.26049 -7.41436 -6.91079 -5.84453 -3.84374 3.38278 3.45901 3.49946 4.50020 4.55684 4.87332 5.05833 5.46411 5.53964 5.66167 5.71148 5.75213 5.84833 5.89474 5.95368 5.96918 6.02891 6.07410 6.09645 6.15424 6.22869 6.28767 6.41760 6.44182 6.49115 6.71662 6.86299 7.01401 7.13057 7.52681 7.85857 7.92476 7.95786 8.03126 8.18975 8.31034 8.51002 8.80932 9.20461 9.76899 11.23190 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.011461 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.026911 B = 2442.570129 C = 3198.352856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C 0.025 3.975 4 C 0.062 3.938 5 N -0.529 5.529 6 C 0.215 3.785 7 H 0.050 0.950 8 C -0.483 4.483 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.892 5.892 12 Si 0.890 3.110 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.288 1.288 16 C 0.064 3.936 17 N -0.550 5.550 18 C 0.031 3.969 19 C 0.068 3.932 20 C 0.077 3.923 21 H 0.040 0.960 22 C -0.143 4.143 23 H 0.081 0.919 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.256 0.744 31 H 0.010 0.990 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.014 0.986 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 9.136 -2.610 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C -0.054 4.054 4 C -0.067 4.067 5 N -0.254 5.254 6 C 0.109 3.891 7 H 0.068 0.932 8 C -0.522 4.522 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.532 5.532 12 Si 0.718 3.282 13 H -0.200 1.200 14 H -0.214 1.214 15 H -0.214 1.214 16 C -0.063 4.063 17 N -0.274 5.274 18 C -0.117 4.117 19 C -0.060 4.060 20 C -0.032 4.032 21 H 0.058 0.942 22 C -0.201 4.201 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.276 8.762 -2.663 9.246 hybrid contribution -0.001 -0.357 0.747 0.828 sum -1.277 8.405 -1.916 8.715 Atomic orbital electron populations 1.22659 0.83933 1.02149 0.98105 1.88519 1.17080 1.25400 1.94542 1.23314 0.97468 0.86112 0.98497 1.22209 0.88899 0.99091 0.96464 1.62465 1.58584 1.04784 0.99560 1.19542 0.96118 0.80938 0.92464 0.93245 1.21028 1.35115 0.93923 1.02159 0.92356 1.24834 0.95344 0.97661 0.96048 1.69892 1.40982 1.10509 1.31824 0.86581 0.77983 0.79927 0.83662 1.20005 1.21365 1.21437 1.22582 0.96467 0.99648 0.87602 1.62327 1.59154 1.01906 1.04025 1.22237 0.96774 0.99751 0.92982 1.22049 0.97193 0.90369 0.96433 1.21585 0.97463 0.92478 0.91688 0.94171 1.21852 1.01819 0.95853 1.00558 0.90068 0.95517 0.95400 0.94911 0.94308 0.88866 0.91481 0.93390 0.97164 0.87556 0.91810 0.93018 0.96711 0.95289 0.92393 0.93194 0.93040 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.34 -7.34 7.26 -35.23 -0.26 -7.60 16 3 C 0.02 0.46 5.70 37.16 0.21 0.67 16 4 C 0.06 1.21 5.15 -3.82 -0.02 1.19 16 5 N -0.53 -11.49 4.54 -219.91 -1.00 -12.49 16 6 C 0.22 5.46 1.33 -68.81 -0.09 5.37 16 7 H 0.05 1.41 5.48 -51.93 -0.28 1.12 16 8 C -0.48 -13.24 7.54 -34.44 -0.26 -13.50 16 9 H 0.06 1.61 6.48 -52.49 -0.34 1.27 16 10 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 11 N -0.89 -25.59 11.34 55.43 0.63 -24.96 16 12 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.06 1.61 4.65 -3.77 -0.02 1.59 16 17 N -0.55 -11.83 4.97 -242.76 -1.21 -13.04 16 18 C 0.03 0.57 9.63 60.06 0.58 1.15 16 19 C 0.07 1.30 4.90 -3.77 -0.02 1.28 16 20 C 0.08 1.45 2.01 -67.63 -0.14 1.32 16 21 H 0.04 0.82 6.29 -51.93 -0.33 0.49 16 22 C -0.14 -2.12 8.63 37.16 0.32 -1.80 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.69 6.04 -51.93 -0.31 0.38 16 28 H 0.09 2.02 6.08 -51.93 -0.32 1.70 16 29 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.11 2.95 6.12 -51.93 -0.32 2.63 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.71 6.79 -51.93 -0.35 0.36 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -29.62 300.54 -7.53 -37.15 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.79 Total: -0.78 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 1.59 Total: 0.48 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -1.58 Total: -50.49 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.26 Total: -7.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.62 -7.53 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251801439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.554 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds