Wall clock time and date at job start Mon Mar 30 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99819 * 2 1 4 4 C 1.53002 * 109.46662 * 174.93287 * 3 2 1 5 5 N 1.46900 * 109.47535 * 67.27365 * 4 3 2 6 6 C 1.46959 * 110.99777 * 293.52894 * 5 4 3 7 7 H 1.08998 * 109.48984 * 63.21645 * 6 5 4 8 8 C 1.50704 * 109.48835 * 303.17411 * 6 5 4 9 9 H 1.08002 * 119.99886 * 0.04949 * 8 6 5 10 10 C 1.37875 * 120.00015 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99923 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00078 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46945 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47229 * 120.00408 * 12 10 8 15 15 H 1.48504 * 109.47317 * 240.00366 * 12 10 8 16 16 C 1.53044 * 109.38252 * 183.19788 * 6 5 4 17 17 N 1.46957 * 109.36591 * 301.58689 * 16 6 5 18 18 C 1.46897 * 111.00180 * 183.18630 * 17 16 6 19 19 C 1.46958 * 110.87880 * 59.31869 * 17 16 6 20 20 C 1.46999 * 111.02787 * 57.31724 * 5 4 3 21 21 H 1.09004 * 109.49893 * 296.80386 * 20 5 4 22 22 C 1.52996 * 109.48473 * 56.85198 * 20 5 4 23 23 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46844 * 299.99414 * 1 2 3 25 25 H 1.08995 * 109.47131 * 59.99975 * 1 2 3 26 26 H 1.08996 * 109.47215 * 54.93607 * 3 2 1 27 27 H 1.09001 * 109.47102 * 294.92574 * 3 2 1 28 28 H 1.09005 * 109.47242 * 307.27150 * 4 3 2 29 29 H 1.08997 * 109.46740 * 187.27687 * 4 3 2 30 30 H 0.97005 * 119.99647 * 179.97438 * 11 10 8 31 31 H 1.09000 * 109.49125 * 61.55424 * 16 6 5 32 32 H 1.09003 * 109.49286 * 181.59519 * 16 6 5 33 33 H 1.09003 * 109.47295 * 63.95790 * 18 17 16 34 34 H 1.08998 * 109.47022 * 183.95585 * 18 17 16 35 35 H 1.09004 * 109.47203 * 303.95191 * 18 17 16 36 36 H 1.08999 * 109.49265 * 60.64846 * 19 17 16 37 37 H 1.08999 * 109.48989 * 180.69512 * 19 17 16 38 38 H 1.08998 * 109.46838 * 173.36448 * 22 20 5 39 39 H 1.09000 * 109.47273 * 293.37169 * 22 20 5 40 40 H 1.08999 * 109.46813 * 53.36935 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5303 1.1868 0.1274 5 7 4.0771 0.5699 -1.0885 6 6 3.6357 -0.8261 -1.2148 7 1 2.5515 -0.8564 -1.3222 8 6 4.0407 -1.5949 0.0165 9 1 4.5721 -1.0964 0.8138 10 6 3.7325 -2.9343 0.1254 11 7 3.0855 -3.5412 -0.8455 12 14 4.2351 -3.8873 1.6513 13 1 4.9466 -2.9816 2.5886 14 1 3.0241 -4.4336 2.3150 15 1 5.1336 -5.0044 1.2638 16 6 4.2887 -1.4557 -2.4475 17 7 3.9232 -0.6812 -3.6417 18 6 4.4699 -1.2986 -4.8574 19 6 4.3646 0.7149 -3.5159 20 6 3.7116 1.3445 -2.2832 21 1 2.6281 1.3392 -2.4028 22 6 4.2007 2.7857 -2.1263 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6187 1.8775 0.8411 27 1 1.7623 1.8135 -0.9320 28 1 3.7754 0.5680 0.9906 29 1 3.9625 2.1790 0.2573 30 1 2.8690 -4.4837 -0.7690 31 1 5.3721 -1.4501 -2.3280 32 1 3.9406 -2.4826 -2.5591 33 1 4.0206 -2.2815 -4.9993 34 1 4.2445 -0.6685 -5.7178 35 1 5.5502 -1.4038 -4.7572 36 1 5.4488 0.7453 -3.4085 37 1 4.0717 1.2706 -4.4067 38 1 4.0354 3.3287 -3.0568 39 1 3.6504 3.2704 -1.3199 40 1 5.2649 2.7845 -1.8905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251801439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:49 Heat of formation + Delta-G solvation = -40.856264 kcal Electronic energy + Delta-G solvation = -19610.179696 eV Core-core repulsion = 16845.875299 eV Total energy + Delta-G solvation = -2764.304397 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61208 -38.40667 -36.26244 -35.14047 -32.64450 -31.01812 -28.15647 -27.81574 -27.07967 -26.74807 -24.13701 -22.90552 -21.97695 -19.97841 -18.24313 -17.40558 -17.28864 -16.66172 -16.28272 -15.92589 -15.69496 -15.61823 -15.08281 -14.77257 -14.19046 -13.63285 -13.55481 -13.29755 -13.06847 -12.96118 -12.85275 -12.77893 -12.53425 -12.40361 -12.28664 -12.03699 -11.90217 -11.73048 -11.64716 -11.05728 -10.67829 -10.47986 -10.18616 -9.11142 -8.63854 -7.96195 -6.01859 1.42112 1.44054 1.54536 2.50013 3.09959 3.21520 3.40852 3.52028 4.10319 4.23115 4.30779 4.34602 4.45908 4.53997 4.54602 4.58577 4.63273 4.65042 4.69610 4.78002 4.82667 4.87392 4.97221 4.99755 5.13664 5.15061 5.20052 5.27103 5.49193 5.66834 5.82753 5.99530 6.24672 6.35574 6.43622 6.55734 6.63604 6.95813 7.12875 7.62736 9.10301 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.011461 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.026911 B = 2442.570129 C = 3198.352856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.383 6.383 3 C 0.028 3.972 4 C 0.061 3.939 5 N -0.541 5.541 6 C 0.226 3.774 7 H 0.020 0.980 8 C -0.490 4.490 9 H 0.049 0.951 10 C 0.015 3.985 11 N -0.918 5.918 12 Si 0.947 3.053 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.079 3.921 17 N -0.564 5.564 18 C 0.032 3.968 19 C 0.067 3.933 20 C 0.075 3.925 21 H 0.027 0.973 22 C -0.132 4.132 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.255 0.745 31 H -0.013 1.013 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.024 0.976 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 11.267 -2.837 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.302 6.302 3 C -0.050 4.050 4 C -0.067 4.067 5 N -0.265 5.265 6 C 0.119 3.881 7 H 0.038 0.962 8 C -0.530 4.530 9 H 0.067 0.933 10 C -0.182 4.182 11 N -0.559 5.559 12 Si 0.774 3.226 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.049 4.049 17 N -0.289 5.289 18 C -0.116 4.116 19 C -0.061 4.061 20 C -0.034 4.034 21 H 0.045 0.955 22 C -0.190 4.190 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.005 0.995 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.034 0.966 36 H 0.042 0.958 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.225 10.920 -2.892 11.363 hybrid contribution -0.037 -0.968 0.777 1.242 sum -1.262 9.952 -2.115 10.252 Atomic orbital electron populations 1.22738 0.82180 1.02031 0.99947 1.88448 1.19266 1.27580 1.94894 1.23333 0.96465 0.85262 0.99989 1.22246 0.90176 0.99885 0.94405 1.62391 1.59012 1.03555 1.01591 1.19179 0.94173 0.83181 0.91598 0.96235 1.21270 1.34524 0.94349 1.02825 0.93284 1.25507 0.95591 0.98611 0.98521 1.70032 1.42037 1.10534 1.33301 0.85684 0.77588 0.78632 0.80699 1.19503 1.21196 1.21161 1.22172 0.94515 0.98603 0.89611 1.62260 1.59886 1.03135 1.03605 1.22294 0.96639 1.00028 0.92651 1.22196 0.96917 0.88970 0.98039 1.21729 0.96799 0.94488 0.90378 0.95527 1.21777 1.01672 0.92982 1.02591 0.91303 0.92917 0.94121 0.92184 0.93465 0.91778 0.88057 0.93596 0.99473 0.90926 0.92591 0.89618 0.96564 0.95757 0.89119 0.90512 0.91719 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.38 -16.67 7.26 -148.98 -1.08 -17.76 16 3 C 0.03 0.97 5.70 71.98 0.41 1.38 16 4 C 0.06 2.31 5.15 86.30 0.44 2.75 16 5 N -0.54 -23.22 4.54 -849.67 -3.86 -27.08 16 6 C 0.23 11.71 1.33 44.17 0.06 11.77 16 7 H 0.02 1.18 5.48 -2.39 -0.01 1.16 16 8 C -0.49 -27.62 7.54 25.60 0.19 -27.43 16 9 H 0.05 2.79 6.48 -2.91 -0.02 2.77 16 10 C 0.02 0.88 5.30 84.65 0.45 1.32 16 11 N -0.92 -54.45 11.34 21.45 0.24 -54.21 16 12 Si 0.95 45.51 29.54 68.60 2.03 47.53 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 16 C 0.08 4.09 4.65 86.31 0.40 4.49 16 17 N -0.56 -24.09 4.97 -921.94 -4.58 -28.67 16 18 C 0.03 1.13 9.63 127.69 1.23 2.36 16 19 C 0.07 2.40 4.90 86.31 0.42 2.82 16 20 C 0.07 2.68 2.01 44.91 0.09 2.77 16 21 H 0.03 1.04 6.29 -2.39 -0.01 1.03 16 22 C -0.13 -3.43 8.63 71.98 0.62 -2.81 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.57 6.04 -2.39 -0.01 1.56 16 28 H 0.06 2.79 6.08 -2.38 -0.01 2.77 16 29 H 0.10 3.07 6.56 -2.39 -0.02 3.06 16 30 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.07 4.22 6.12 -2.39 -0.01 4.20 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.51 6.79 -2.39 -0.02 1.49 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.98 300.54 -0.69 -66.67 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.00 Total: 11.89 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.57 Total: 1.62 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -8.20 Total: -109.96 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.08 Total: -17.76 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -65.98 -0.69 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251801439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.813 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds