Wall clock time and date at job start Mon Mar 30 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46787 * 2 1 4 4 C 1.50693 * 109.47541 * 240.00065 * 2 1 3 5 5 H 1.08003 * 119.99854 * 274.88299 * 4 2 1 6 6 C 1.37882 * 120.00113 * 94.87835 * 4 2 1 7 7 N 1.31511 * 119.99914 * 183.88135 * 6 4 2 8 8 Si 1.86798 * 119.99891 * 3.88308 * 6 4 2 9 9 H 1.48501 * 109.46891 * 84.42436 * 8 6 4 10 10 H 1.48492 * 109.47174 * 204.42382 * 8 6 4 11 11 H 1.48497 * 109.47140 * 324.42558 * 8 6 4 12 12 N 1.46903 * 109.46923 * 119.99517 * 2 1 3 13 13 C 1.46900 * 110.99738 * 176.05051 * 12 2 1 14 14 C 1.46893 * 111.00199 * 300.00481 * 12 2 1 15 15 C 1.53003 * 109.47127 * 169.99923 * 14 12 2 16 16 H 1.08995 * 109.50521 * 60.08536 * 15 14 12 17 17 C 1.53094 * 109.50632 * 180.21834 * 15 14 12 18 18 N 1.47014 * 109.25738 * 176.78454 * 17 15 14 19 19 C 1.46902 * 111.00303 * 177.60518 * 18 17 15 20 20 C 1.47021 * 110.79056 * 301.40291 * 18 17 15 21 21 C 1.53101 * 109.25142 * 58.55041 * 20 18 17 22 22 O 1.43011 * 109.50720 * 300.00178 * 15 14 12 23 23 H 1.09005 * 109.46818 * 186.76815 * 1 2 3 24 24 H 1.08997 * 109.47417 * 306.76770 * 1 2 3 25 25 H 1.09005 * 109.47028 * 66.76900 * 1 2 3 26 26 H 0.96995 * 120.00123 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.46869 * 183.96067 * 13 12 2 28 28 H 1.09000 * 109.46843 * 303.95222 * 13 12 2 29 29 H 1.08996 * 109.47429 * 63.95409 * 13 12 2 30 30 H 1.09001 * 109.47361 * 49.99769 * 14 12 2 31 31 H 1.09002 * 109.47418 * 290.00035 * 14 12 2 32 32 H 1.09006 * 109.50491 * 296.71326 * 17 15 14 33 33 H 1.08994 * 109.51134 * 56.84706 * 17 15 14 34 34 H 1.08998 * 109.46797 * 59.99858 * 19 18 17 35 35 H 1.09005 * 109.47298 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47042 * 300.00104 * 19 18 17 37 37 H 1.08998 * 109.47262 * 298.64119 * 20 18 17 38 38 H 1.08993 * 109.54559 * 178.50148 * 20 18 17 39 39 H 1.08996 * 109.50623 * 183.25966 * 21 20 18 40 40 H 1.09004 * 109.50835 * 63.17181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1374 -1.7853 -1.2283 6 6 2.3580 0.0120 -2.3588 7 7 2.7234 -0.6129 -3.4568 8 14 2.2802 1.8781 -2.3280 9 1 3.5486 2.4173 -1.7753 10 1 2.0855 2.3882 -3.7089 11 1 1.1446 2.3121 -1.4753 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7944 1.1872 14 6 1.5485 -0.0263 2.4211 15 6 1.8625 -0.9042 3.6342 16 1 2.9390 -1.0621 3.7004 17 6 1.3670 -0.2132 4.9073 18 7 1.6017 -1.0947 6.0602 19 6 1.1912 -0.4448 7.3120 20 6 0.9110 -2.3805 5.8831 21 6 1.4103 -3.0492 4.5996 22 8 1.2027 -2.1653 3.4946 23 1 -0.3633 -1.0206 0.1211 24 1 -0.3634 0.6151 0.8232 25 1 -0.3633 0.4054 -0.9444 26 1 2.9528 -0.1048 -4.2505 27 1 3.8163 -1.3720 2.0501 28 1 3.8069 -1.2914 0.2721 29 1 3.9191 0.2045 1.2301 30 1 0.4721 0.1325 2.3563 31 1 2.0517 0.9347 2.5281 32 1 1.9087 0.7221 5.0481 33 1 0.3005 -0.0070 4.8179 34 1 0.1289 -0.2053 7.2657 35 1 1.3752 -1.1189 8.1487 36 1 1.7646 0.4718 7.4505 37 1 -0.1630 -2.2090 5.8101 38 1 1.1199 -3.0270 6.7353 39 1 0.8597 -3.9751 4.4336 40 1 2.4736 -3.2701 4.6941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252668134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:01 Heat of formation + Delta-G solvation = -27.458335 kcal Electronic energy + Delta-G solvation = -18605.053611 eV Core-core repulsion = 15841.330191 eV Total energy + Delta-G solvation = -2763.723419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 5.77 seconds Orbital eigenvalues (eV) -39.60339 -37.04387 -35.47940 -32.87535 -31.52970 -29.82573 -28.86227 -26.87452 -24.79795 -24.17204 -23.88275 -21.54089 -20.23706 -19.13819 -16.96890 -16.23925 -16.17860 -15.47032 -15.03132 -14.81032 -14.60090 -13.92954 -13.73355 -13.60683 -12.94438 -12.63059 -12.43358 -12.42236 -12.14089 -11.98092 -11.63043 -11.27464 -11.12677 -10.97095 -10.80689 -10.68346 -10.46554 -10.14857 -9.87691 -9.69620 -9.37197 -8.99886 -8.54424 -8.53102 -7.18866 -6.04747 -4.02381 3.27489 3.36497 3.38339 3.68479 4.00199 4.42615 4.66179 4.89782 4.93875 5.11956 5.16969 5.21755 5.33039 5.35061 5.41636 5.50758 5.61767 5.64010 5.72918 5.83829 5.86778 6.06853 6.22738 6.27287 6.35908 6.53045 6.66312 6.74513 6.79242 6.79678 6.92772 7.09769 7.37801 7.49977 7.68977 8.08608 8.21011 8.72250 9.07267 9.59266 11.08461 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043426 B = 0.005598 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.623816 B = 5001.006917 C = 5211.308783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.179 3.821 3 H -0.002 1.002 4 C -0.497 4.497 5 H 0.082 0.918 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.267 1.267 12 N -0.520 5.520 13 C 0.038 3.962 14 C 0.055 3.945 15 C 0.101 3.899 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.060 3.940 22 O -0.353 6.353 23 H 0.055 0.945 24 H 0.019 0.981 25 H 0.047 0.953 26 H 0.263 0.737 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 0.554 19.120 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.073 3.927 3 H 0.015 0.985 4 C -0.536 4.536 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.192 1.192 12 N -0.244 5.244 13 C -0.111 4.111 14 C -0.074 4.074 15 C 0.042 3.958 16 H 0.083 0.917 17 C -0.106 4.106 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.017 4.017 22 O -0.271 6.271 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.347 -0.034 18.766 18.913 hybrid contribution -0.388 2.151 0.241 2.198 sum -2.735 2.117 19.007 19.319 Atomic orbital electron populations 1.21973 0.97945 1.00540 0.98552 1.19741 0.92232 0.91905 0.88870 0.98467 1.20899 1.42701 0.95990 0.93995 0.90026 1.24989 0.94805 0.97823 0.95463 1.69888 1.46281 1.35578 1.01952 0.86950 0.78941 0.87080 0.77100 1.20420 1.21472 1.19164 1.62046 1.09759 1.51818 1.00754 1.22229 0.88076 0.98494 1.02276 1.22139 1.01525 0.93484 0.90281 1.22204 0.96510 0.84421 0.92645 0.91741 1.22837 1.00102 0.96576 0.91072 1.62183 1.57706 1.04343 1.02575 1.22370 0.98473 0.99663 0.91780 1.22843 0.96741 0.91717 0.99817 1.22605 1.00667 0.93167 0.85279 1.88209 1.72830 1.25479 1.40601 0.92557 0.96212 0.93353 0.92677 0.93688 0.89538 0.97562 0.90309 0.94712 0.89926 0.93888 0.95643 0.91376 0.91283 0.94084 0.90048 0.88659 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.76 37.16 0.33 -2.61 16 2 C 0.18 4.33 1.70 -68.87 -0.12 4.22 16 3 H 0.00 -0.06 5.36 -51.93 -0.28 -0.33 16 4 C -0.50 -13.99 7.39 -34.44 -0.25 -14.25 16 5 H 0.08 2.55 8.05 -52.48 -0.42 2.13 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 8 Si 0.87 21.64 26.95 -169.99 -4.58 17.06 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.38 6.88 56.52 0.39 -6.00 16 12 N -0.52 -11.26 4.49 -236.29 -1.06 -12.33 16 13 C 0.04 0.77 9.06 60.06 0.54 1.32 16 14 C 0.05 0.98 4.47 -3.83 -0.02 0.96 16 15 C 0.10 1.58 2.67 -26.68 -0.07 1.51 16 16 H 0.06 1.04 6.56 -51.93 -0.34 0.70 16 17 C 0.02 0.29 4.95 -3.71 -0.02 0.28 16 18 N -0.54 -6.45 4.98 -242.59 -1.21 -7.66 16 19 C 0.03 0.23 9.60 60.07 0.58 0.81 16 20 C 0.02 0.19 5.67 -3.71 -0.02 0.17 16 21 C 0.06 0.78 7.01 37.21 0.26 1.04 16 22 O -0.35 -6.00 10.33 -35.23 -0.36 -6.36 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.02 0.38 6.57 -51.93 -0.34 0.03 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.04 0.82 6.47 -51.93 -0.34 0.48 16 28 H 0.09 2.00 6.82 -51.93 -0.35 1.64 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 31 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -30.92 308.47 -7.71 -38.62 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.02 Total: -2.75 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 1.11 Total: -4.62 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -1.50 Total: -46.60 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.58 Total: 17.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.92 -7.71 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252668134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.166 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.77 seconds