Wall clock time and date at job start Mon Mar 30 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46787 * 2 1 4 4 C 1.50693 * 109.47541 * 240.00065 * 2 1 3 5 5 H 1.08003 * 119.99854 * 274.88299 * 4 2 1 6 6 C 1.37882 * 120.00113 * 94.87835 * 4 2 1 7 7 N 1.31511 * 119.99914 * 183.88135 * 6 4 2 8 8 Si 1.86798 * 119.99891 * 3.88308 * 6 4 2 9 9 H 1.48501 * 109.46891 * 84.42436 * 8 6 4 10 10 H 1.48492 * 109.47174 * 204.42382 * 8 6 4 11 11 H 1.48497 * 109.47140 * 324.42558 * 8 6 4 12 12 N 1.46903 * 109.46923 * 119.99517 * 2 1 3 13 13 C 1.46900 * 110.99738 * 176.05051 * 12 2 1 14 14 C 1.46893 * 111.00199 * 300.00481 * 12 2 1 15 15 C 1.53003 * 109.47127 * 169.99923 * 14 12 2 16 16 H 1.08995 * 109.50521 * 60.08536 * 15 14 12 17 17 C 1.53094 * 109.50632 * 180.21834 * 15 14 12 18 18 N 1.47014 * 109.25738 * 176.78454 * 17 15 14 19 19 C 1.46902 * 111.00303 * 177.60518 * 18 17 15 20 20 C 1.47021 * 110.79056 * 301.40291 * 18 17 15 21 21 C 1.53101 * 109.25142 * 58.55041 * 20 18 17 22 22 O 1.43011 * 109.50720 * 300.00178 * 15 14 12 23 23 H 1.09005 * 109.46818 * 186.76815 * 1 2 3 24 24 H 1.08997 * 109.47417 * 306.76770 * 1 2 3 25 25 H 1.09005 * 109.47028 * 66.76900 * 1 2 3 26 26 H 0.96995 * 120.00123 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.46869 * 183.96067 * 13 12 2 28 28 H 1.09000 * 109.46843 * 303.95222 * 13 12 2 29 29 H 1.08996 * 109.47429 * 63.95409 * 13 12 2 30 30 H 1.09001 * 109.47361 * 49.99769 * 14 12 2 31 31 H 1.09002 * 109.47418 * 290.00035 * 14 12 2 32 32 H 1.09006 * 109.50491 * 296.71326 * 17 15 14 33 33 H 1.08994 * 109.51134 * 56.84706 * 17 15 14 34 34 H 1.08998 * 109.46797 * 59.99858 * 19 18 17 35 35 H 1.09005 * 109.47298 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47042 * 300.00104 * 19 18 17 37 37 H 1.08998 * 109.47262 * 298.64119 * 20 18 17 38 38 H 1.08993 * 109.54559 * 178.50148 * 20 18 17 39 39 H 1.08996 * 109.50623 * 183.25966 * 21 20 18 40 40 H 1.09004 * 109.50835 * 63.17181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1374 -1.7853 -1.2283 6 6 2.3580 0.0120 -2.3588 7 7 2.7234 -0.6129 -3.4568 8 14 2.2802 1.8781 -2.3280 9 1 3.5486 2.4173 -1.7753 10 1 2.0855 2.3882 -3.7089 11 1 1.1446 2.3121 -1.4753 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7944 1.1872 14 6 1.5485 -0.0263 2.4211 15 6 1.8625 -0.9042 3.6342 16 1 2.9390 -1.0621 3.7004 17 6 1.3670 -0.2132 4.9073 18 7 1.6017 -1.0947 6.0602 19 6 1.1912 -0.4448 7.3120 20 6 0.9110 -2.3805 5.8831 21 6 1.4103 -3.0492 4.5996 22 8 1.2027 -2.1653 3.4946 23 1 -0.3633 -1.0206 0.1211 24 1 -0.3634 0.6151 0.8232 25 1 -0.3633 0.4054 -0.9444 26 1 2.9528 -0.1048 -4.2505 27 1 3.8163 -1.3720 2.0501 28 1 3.8069 -1.2914 0.2721 29 1 3.9191 0.2045 1.2301 30 1 0.4721 0.1325 2.3563 31 1 2.0517 0.9347 2.5281 32 1 1.9087 0.7221 5.0481 33 1 0.3005 -0.0070 4.8179 34 1 0.1289 -0.2053 7.2657 35 1 1.3752 -1.1189 8.1487 36 1 1.7646 0.4718 7.4505 37 1 -0.1630 -2.2090 5.8101 38 1 1.1199 -3.0270 6.7353 39 1 0.8597 -3.9751 4.4336 40 1 2.4736 -3.2701 4.6941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252668134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:57 Heat of formation + Delta-G solvation = -51.377648 kcal Electronic energy + Delta-G solvation = -18606.090830 eV Core-core repulsion = 15841.330191 eV Total energy + Delta-G solvation = -2764.760639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70311 -38.65621 -36.53348 -34.79966 -33.05428 -31.50323 -29.85206 -28.35368 -26.61892 -25.51689 -24.97819 -22.89922 -21.30876 -20.93776 -19.08491 -17.45201 -17.26258 -16.70948 -16.44999 -15.93214 -15.83534 -15.65962 -15.19147 -14.70800 -14.57162 -14.35624 -14.24695 -13.30056 -13.23110 -13.15182 -12.92290 -12.87093 -12.66133 -12.61134 -12.29398 -12.22773 -11.96049 -11.84787 -11.78206 -11.20834 -11.04754 -10.72867 -10.46929 -9.40917 -8.88257 -8.26511 -6.29056 1.32366 1.34282 1.44999 2.34205 2.75732 2.91414 3.05300 3.35795 3.93580 3.99992 4.04009 4.08771 4.26410 4.37969 4.47074 4.52180 4.56267 4.61989 4.62452 4.67992 4.68306 4.80926 4.84099 4.87110 4.95401 4.96756 4.98914 5.03454 5.18921 5.30024 5.50610 5.70347 5.90161 5.98784 6.12628 6.34609 6.47625 6.74054 6.81707 7.36637 8.90713 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043426 B = 0.005598 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.623816 B = 5001.006917 C = 5211.308783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.181 3.819 3 H -0.001 1.001 4 C -0.497 4.497 5 H 0.032 0.968 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.937 3.063 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.247 1.247 12 N -0.537 5.537 13 C 0.045 3.955 14 C 0.056 3.944 15 C 0.105 3.895 16 H 0.058 0.942 17 C 0.031 3.969 18 N -0.555 5.555 19 C 0.025 3.975 20 C 0.022 3.978 21 C 0.054 3.946 22 O -0.387 6.387 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 2.305 21.769 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.535 4.535 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.761 3.239 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.170 1.170 12 N -0.261 5.261 13 C -0.103 4.103 14 C -0.073 4.073 15 C 0.047 3.953 16 H 0.076 0.924 17 C -0.098 4.098 18 N -0.280 5.280 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.023 4.023 22 O -0.306 6.306 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.938 1.711 21.458 21.726 hybrid contribution -0.189 1.457 -0.523 1.559 sum -3.127 3.168 20.935 21.403 Atomic orbital electron populations 1.21857 0.96374 1.00626 0.99551 1.19623 0.93367 0.91361 0.88298 0.98339 1.21019 1.42412 0.93956 0.96137 0.94998 1.25817 0.94501 1.03149 0.94826 1.70044 1.48121 1.37773 1.02906 0.85893 0.79881 0.80543 0.77572 1.19480 1.21171 1.17013 1.61916 1.10170 1.52549 1.01472 1.22111 0.87874 0.98873 1.01438 1.22214 1.01491 0.94399 0.89189 1.22097 0.96090 0.84174 0.92977 0.92442 1.22698 0.99958 0.96898 0.90254 1.62199 1.58195 1.04538 1.03075 1.22438 0.98734 1.00230 0.90806 1.22817 0.96361 0.91834 0.99587 1.22809 1.00968 0.93243 0.85237 1.88151 1.73225 1.26409 1.42809 0.93582 0.92858 0.94031 0.92555 0.91383 0.93165 0.96733 0.90245 0.93157 0.88538 0.94103 0.95378 0.89898 0.90486 0.94356 0.87681 0.87427 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.76 71.98 0.63 -4.80 16 2 C 0.18 8.64 1.70 44.17 0.08 8.71 16 3 H 0.00 -0.04 5.36 -2.38 -0.01 -0.06 16 4 C -0.50 -28.76 7.39 25.60 0.19 -28.58 16 5 H 0.03 2.11 8.05 -2.91 -0.02 2.09 16 6 C 0.01 0.84 5.47 84.66 0.46 1.30 16 7 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 8 Si 0.94 44.28 26.95 68.60 1.85 46.13 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.25 -10.77 6.88 99.48 0.68 -10.09 16 12 N -0.54 -22.97 4.49 -901.48 -4.05 -27.02 16 13 C 0.05 1.87 9.06 127.69 1.16 3.02 16 14 C 0.06 1.87 4.47 86.31 0.39 2.25 16 15 C 0.11 3.10 2.67 30.63 0.08 3.18 16 16 H 0.06 1.76 6.56 -2.39 -0.02 1.74 16 17 C 0.03 0.71 4.95 86.31 0.43 1.14 16 18 N -0.55 -11.54 4.98 -921.42 -4.59 -16.14 16 19 C 0.03 0.38 9.60 127.69 1.23 1.61 16 20 C 0.02 0.43 5.67 86.31 0.49 0.92 16 21 C 0.05 1.31 7.01 72.02 0.50 1.81 16 22 O -0.39 -12.72 10.33 -148.98 -1.54 -14.25 16 23 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.05 1.92 6.57 -2.39 -0.02 1.91 16 25 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.07 2.44 6.47 -2.39 -0.02 2.42 16 28 H 0.05 2.40 6.82 -2.39 -0.02 2.39 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 2.65 5.97 -2.39 -0.01 2.63 16 31 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 32 H 0.10 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.97 308.47 -1.44 -69.41 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.96 Total: 10.63 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.63 Total: -9.42 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -8.34 Total: -102.49 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.54 Total: -14.25 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -67.97 -1.44 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252668134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.030 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds