Wall clock time and date at job start Mon Mar 30 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99611 * 2 1 4 4 H 1.08997 * 109.52389 * 30.12557 * 3 2 1 5 5 C 1.53119 * 109.52052 * 269.99947 * 3 2 1 6 6 C 1.53036 * 109.28003 * 297.68737 * 5 3 2 7 7 N 1.46843 * 109.52557 * 300.82347 * 6 5 3 8 8 C 1.46901 * 111.00254 * 185.83796 * 7 6 5 9 9 H 1.09001 * 109.47322 * 176.57422 * 8 7 6 10 10 C 1.53005 * 109.46846 * 56.57802 * 8 7 6 11 11 C 1.50697 * 109.47130 * 296.57568 * 8 7 6 12 12 H 1.07998 * 120.00003 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99856 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99914 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 120.00291 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.47195 * 270.00052 * 15 13 11 17 17 H 1.48503 * 109.46970 * 29.99858 * 15 13 11 18 18 H 1.48500 * 109.47040 * 149.99967 * 15 13 11 19 19 C 1.46843 * 111.19745 * 61.74050 * 7 6 5 20 20 H 1.08991 * 109.46732 * 58.27555 * 19 7 6 21 21 C 1.53003 * 109.46254 * 178.24803 * 19 7 6 22 22 N 1.46906 * 109.46657 * 291.78780 * 21 19 7 23 23 C 1.53042 * 109.52582 * 298.25684 * 19 7 6 24 24 H 1.09004 * 109.47685 * 60.00201 * 1 2 3 25 25 H 1.09004 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47433 * 299.99701 * 1 2 3 27 27 H 1.08996 * 109.50252 * 177.74592 * 5 3 2 28 28 H 1.08998 * 109.50449 * 57.63159 * 5 3 2 29 29 H 1.09005 * 109.46585 * 180.80525 * 6 5 3 30 30 H 1.09008 * 109.46358 * 60.84128 * 6 5 3 31 31 H 1.08998 * 109.47278 * 52.60034 * 10 8 7 32 32 H 1.09000 * 109.46840 * 172.60293 * 10 8 7 33 33 H 1.09001 * 109.46983 * 292.59882 * 10 8 7 34 34 H 0.97006 * 120.00309 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47478 * 51.78895 * 21 19 7 36 36 H 1.09002 * 109.47311 * 171.79406 * 21 19 7 37 37 H 1.00904 * 110.99989 * 173.62150 * 22 21 19 38 38 H 1.00893 * 111.00314 * 297.58413 * 22 21 19 39 39 H 1.09004 * 109.50424 * 299.24447 * 23 19 7 40 40 H 1.08992 * 109.53781 * 179.13576 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3465 1.9997 0.5156 5 6 2.2182 1.7730 -1.4432 6 6 3.1982 0.8291 -2.1437 7 7 4.4771 0.8256 -1.4222 8 6 5.4863 0.0383 -2.1431 9 1 6.4398 0.1024 -1.6188 10 6 5.6460 0.5901 -3.5612 11 6 5.0460 -1.4013 -2.2107 12 1 4.1099 -1.7013 -1.7634 13 6 5.8377 -2.3352 -2.8447 14 7 5.4532 -3.5915 -2.9042 15 14 7.4564 -1.8162 -3.6192 16 1 7.2248 -1.4194 -5.0313 17 1 8.0184 -0.6654 -2.8674 18 1 8.4129 -2.9513 -3.5745 19 6 4.3102 0.3354 -0.0481 20 1 3.8921 -0.6709 -0.0698 21 6 5.6705 0.3071 0.6518 22 7 6.5140 -0.7290 0.0409 23 6 3.3635 1.2646 0.7151 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.6243 2.7845 -1.4431 28 1 1.2641 1.7633 -1.9700 29 1 3.3596 1.1674 -3.1673 30 1 2.7853 -0.1797 -2.1557 31 1 5.8356 1.6624 -3.5146 32 1 6.4834 0.0940 -4.0519 33 1 4.7328 0.4068 -4.1274 34 1 6.0100 -4.2486 -3.3506 35 1 6.1539 1.2782 0.5460 36 1 5.5303 0.0843 1.7096 37 1 7.4510 -0.6988 0.4140 38 1 6.1064 -1.6442 0.1606 39 1 3.7876 2.2682 0.7491 40 1 3.2274 0.8923 1.7304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252783035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:47 Heat of formation + Delta-G solvation = -19.020905 kcal Electronic energy + Delta-G solvation = -19619.935291 eV Core-core repulsion = 16856.577746 eV Total energy + Delta-G solvation = -2763.357545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28077 -36.99421 -33.64417 -33.41852 -31.43197 -29.81243 -28.73793 -26.34898 -24.87594 -24.27199 -23.05138 -20.66729 -19.80243 -18.73374 -16.45644 -15.88044 -15.48321 -15.10351 -14.91937 -14.53992 -14.24702 -13.95198 -13.34759 -13.12054 -12.66300 -12.51646 -12.03586 -12.00702 -11.67783 -11.48275 -11.33519 -11.14432 -10.76673 -10.74301 -10.35510 -10.19943 -10.04667 -9.72237 -9.52132 -9.32093 -9.08781 -8.96130 -8.29097 -7.24359 -6.80576 -5.79876 -3.72095 3.47504 3.56962 3.64485 4.09477 4.68468 5.03640 5.10565 5.18157 5.35287 5.45911 5.51964 5.54834 5.62761 5.81553 5.83587 5.98694 6.04391 6.11621 6.16149 6.28123 6.32712 6.34985 6.47133 6.60137 6.71377 6.83769 6.97809 7.01910 7.15197 7.36367 7.54271 7.85809 7.97931 8.02372 8.31995 8.48722 8.59596 8.81280 9.25547 9.88630 11.33923 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.008971 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.536671 B = 3120.443307 C = 3267.360247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.091 3.909 4 H 0.049 0.951 5 C -0.138 4.138 6 C 0.061 3.939 7 N -0.521 5.521 8 C 0.156 3.844 9 H 0.105 0.895 10 C -0.151 4.151 11 C -0.496 4.496 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.917 5.917 15 Si 0.890 3.110 16 H -0.292 1.292 17 H -0.261 1.261 18 H -0.309 1.309 19 C 0.098 3.902 20 H 0.059 0.941 21 C 0.075 3.925 22 N -0.816 5.816 23 C -0.108 4.108 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.012 0.988 37 H 0.318 0.682 38 H 0.352 0.648 39 H 0.074 0.926 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 10.139 7.248 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C 0.033 3.967 4 H 0.067 0.933 5 C -0.176 4.176 6 C -0.067 4.067 7 N -0.245 5.245 8 C 0.048 3.952 9 H 0.122 0.878 10 C -0.208 4.208 11 C -0.535 4.535 12 H 0.084 0.916 13 C -0.129 4.129 14 N -0.558 5.558 15 Si 0.723 3.277 16 H -0.220 1.220 17 H -0.186 1.186 18 H -0.237 1.237 19 C -0.012 4.012 20 H 0.077 0.923 21 C -0.056 4.056 22 N -0.346 5.346 23 C -0.146 4.146 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.129 0.871 38 H 0.168 0.832 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.803 10.667 6.545 13.405 hybrid contribution 0.277 -0.923 0.211 0.986 sum -4.526 9.744 6.756 12.692 Atomic orbital electron populations 1.22708 0.82254 1.02308 0.99118 1.88047 1.18503 1.27746 1.94929 1.22148 0.94449 0.84124 0.95980 0.93292 1.22111 0.99299 1.00335 0.95852 1.21825 0.90105 0.98073 0.96717 1.62468 1.07388 1.53640 1.01032 1.20503 0.95107 0.90438 0.89137 0.87803 1.22326 0.99619 0.98078 1.00820 1.21464 1.06111 0.91838 1.34081 0.91565 1.24825 0.97279 0.94636 0.96189 1.69955 1.38328 1.01917 1.45604 0.86832 0.84671 0.77130 0.79074 1.22027 1.18556 1.23734 1.21278 0.92933 0.97178 0.89796 0.92342 1.21708 0.94406 0.96083 0.93442 1.59101 1.04355 1.08871 1.62240 1.21730 0.93786 1.00961 0.98138 0.94481 0.90039 0.94807 0.91231 0.92737 0.91781 0.93483 0.95062 0.94725 0.93926 0.93481 0.91647 0.96991 0.87110 0.83230 0.90695 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.37 -6.43 9.22 -35.23 -0.32 -6.75 16 3 C 0.09 1.39 2.93 -26.61 -0.08 1.31 16 4 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.14 -2.20 5.79 -26.65 -0.15 -2.35 16 6 C 0.06 1.23 4.65 -3.84 -0.02 1.21 16 7 N -0.52 -10.73 4.51 -220.14 -0.99 -11.72 16 8 C 0.16 3.65 1.43 -68.86 -0.10 3.55 16 9 H 0.11 2.50 4.20 -51.93 -0.22 2.28 16 10 C -0.15 -3.47 7.98 37.16 0.30 -3.17 16 11 C -0.50 -13.42 6.07 -34.44 -0.21 -13.63 16 12 H 0.07 2.03 6.08 -52.49 -0.32 1.71 16 13 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 14 N -0.92 -28.27 13.96 55.43 0.77 -27.50 16 15 Si 0.89 22.81 24.30 -169.99 -4.13 18.68 16 16 H -0.29 -7.56 6.94 56.52 0.39 -7.17 16 17 H -0.26 -6.38 6.53 56.52 0.37 -6.02 16 18 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 19 C 0.10 1.86 1.73 -67.72 -0.12 1.74 16 20 H 0.06 1.35 6.33 -51.93 -0.33 1.02 16 21 C 0.08 1.29 5.99 -3.82 -0.02 1.27 16 22 N -0.82 -15.42 5.28 -10.36 -0.05 -15.47 16 23 C -0.11 -1.68 5.10 -26.65 -0.14 -1.81 16 24 H 0.04 0.45 7.84 -51.93 -0.41 0.04 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 29 H 0.06 1.30 6.09 -51.93 -0.32 0.98 16 30 H 0.05 1.11 6.49 -51.92 -0.34 0.77 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.83 3.51 -51.93 -0.18 0.64 16 33 H 0.04 0.98 6.65 -51.93 -0.35 0.63 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 37 H 0.32 5.16 9.08 -39.29 -0.36 4.80 16 38 H 0.35 7.25 8.41 -39.30 -0.33 6.92 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -30.75 289.44 -6.42 -37.16 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.51 Total: 9.70 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.46 Total: -8.47 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.27 Total: -54.69 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.32 Total: -6.75 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.13 Total: 18.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.75 -6.42 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.143 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds