Wall clock time and date at job start Mon Mar 30 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99611 * 2 1 4 4 H 1.08997 * 109.52389 * 30.12557 * 3 2 1 5 5 C 1.53119 * 109.52052 * 269.99947 * 3 2 1 6 6 C 1.53036 * 109.28003 * 297.68737 * 5 3 2 7 7 N 1.46843 * 109.52557 * 300.82347 * 6 5 3 8 8 C 1.46901 * 111.00254 * 185.83796 * 7 6 5 9 9 H 1.09001 * 109.47322 * 176.57422 * 8 7 6 10 10 C 1.53005 * 109.46846 * 56.57802 * 8 7 6 11 11 C 1.50697 * 109.47130 * 296.57568 * 8 7 6 12 12 H 1.07998 * 120.00003 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99856 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99914 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 120.00291 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.47195 * 270.00052 * 15 13 11 17 17 H 1.48503 * 109.46970 * 29.99858 * 15 13 11 18 18 H 1.48500 * 109.47040 * 149.99967 * 15 13 11 19 19 C 1.46843 * 111.19745 * 61.74050 * 7 6 5 20 20 H 1.08991 * 109.46732 * 58.27555 * 19 7 6 21 21 C 1.53003 * 109.46254 * 178.24803 * 19 7 6 22 22 N 1.46906 * 109.46657 * 291.78780 * 21 19 7 23 23 C 1.53042 * 109.52582 * 298.25684 * 19 7 6 24 24 H 1.09004 * 109.47685 * 60.00201 * 1 2 3 25 25 H 1.09004 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47433 * 299.99701 * 1 2 3 27 27 H 1.08996 * 109.50252 * 177.74592 * 5 3 2 28 28 H 1.08998 * 109.50449 * 57.63159 * 5 3 2 29 29 H 1.09005 * 109.46585 * 180.80525 * 6 5 3 30 30 H 1.09008 * 109.46358 * 60.84128 * 6 5 3 31 31 H 1.08998 * 109.47278 * 52.60034 * 10 8 7 32 32 H 1.09000 * 109.46840 * 172.60293 * 10 8 7 33 33 H 1.09001 * 109.46983 * 292.59882 * 10 8 7 34 34 H 0.97006 * 120.00309 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47478 * 51.78895 * 21 19 7 36 36 H 1.09002 * 109.47311 * 171.79406 * 21 19 7 37 37 H 1.00904 * 110.99989 * 173.62150 * 22 21 19 38 38 H 1.00893 * 111.00314 * 297.58413 * 22 21 19 39 39 H 1.09004 * 109.50424 * 299.24447 * 23 19 7 40 40 H 1.08992 * 109.53781 * 179.13576 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3465 1.9997 0.5156 5 6 2.2182 1.7730 -1.4432 6 6 3.1982 0.8291 -2.1437 7 7 4.4771 0.8256 -1.4222 8 6 5.4863 0.0383 -2.1431 9 1 6.4398 0.1024 -1.6188 10 6 5.6460 0.5901 -3.5612 11 6 5.0460 -1.4013 -2.2107 12 1 4.1099 -1.7013 -1.7634 13 6 5.8377 -2.3352 -2.8447 14 7 5.4532 -3.5915 -2.9042 15 14 7.4564 -1.8162 -3.6192 16 1 7.2248 -1.4194 -5.0313 17 1 8.0184 -0.6654 -2.8674 18 1 8.4129 -2.9513 -3.5745 19 6 4.3102 0.3354 -0.0481 20 1 3.8921 -0.6709 -0.0698 21 6 5.6705 0.3071 0.6518 22 7 6.5140 -0.7290 0.0409 23 6 3.3635 1.2646 0.7151 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.6243 2.7845 -1.4431 28 1 1.2641 1.7633 -1.9700 29 1 3.3596 1.1674 -3.1673 30 1 2.7853 -0.1797 -2.1557 31 1 5.8356 1.6624 -3.5146 32 1 6.4834 0.0940 -4.0519 33 1 4.7328 0.4068 -4.1274 34 1 6.0100 -4.2486 -3.3506 35 1 6.1539 1.2782 0.5460 36 1 5.5303 0.0843 1.7096 37 1 7.4510 -0.6988 0.4140 38 1 6.1064 -1.6442 0.1606 39 1 3.7876 2.2682 0.7491 40 1 3.2274 0.8923 1.7304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252783035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:47 Heat of formation + Delta-G solvation = -43.918933 kcal Electronic energy + Delta-G solvation = -19621.014951 eV Core-core repulsion = 16856.577746 eV Total energy + Delta-G solvation = -2764.437205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71255 -38.39962 -35.31438 -34.97363 -33.40100 -31.24248 -30.39400 -27.47062 -26.90978 -25.77408 -24.57052 -22.14770 -21.37255 -20.43252 -18.34685 -17.37556 -16.97676 -16.46209 -16.25026 -16.18639 -15.80882 -15.61877 -14.83592 -14.71962 -14.43532 -14.04579 -13.85921 -13.37290 -13.14424 -13.00371 -12.90067 -12.60355 -12.55099 -12.23913 -11.84356 -11.80635 -11.70054 -11.46277 -11.26481 -11.16227 -10.79663 -10.50781 -10.32917 -8.82540 -8.58860 -8.04818 -5.98510 1.41027 1.46995 1.60155 2.53144 2.99176 3.35288 3.49646 3.80823 3.95536 4.08040 4.24010 4.44462 4.48441 4.54905 4.62049 4.71301 4.73016 4.76984 4.81165 4.83962 4.89359 4.96589 4.99474 5.03737 5.10151 5.20260 5.25953 5.40484 5.47843 5.63068 5.84852 6.03626 6.44263 6.48721 6.52922 6.70938 6.84451 6.88276 7.07334 7.65432 9.12886 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.008971 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.536671 B = 3120.443307 C = 3267.360247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.130 4.130 6 C 0.064 3.936 7 N -0.510 5.510 8 C 0.157 3.843 9 H 0.110 0.890 10 C -0.149 4.149 11 C -0.465 4.465 12 H 0.016 0.984 13 C 0.014 3.986 14 N -0.968 5.968 15 Si 0.949 3.051 16 H -0.293 1.293 17 H -0.236 1.236 18 H -0.315 1.315 19 C 0.097 3.903 20 H 0.007 0.993 21 C 0.078 3.922 22 N -0.834 5.834 23 C -0.103 4.103 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.058 0.942 30 H -0.002 1.002 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.334 0.666 38 H 0.338 0.662 39 H 0.099 0.901 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 13.334 8.266 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.168 4.168 6 C -0.065 4.065 7 N -0.234 5.234 8 C 0.049 3.951 9 H 0.127 0.873 10 C -0.207 4.207 11 C -0.505 4.505 12 H 0.035 0.965 13 C -0.180 4.180 14 N -0.612 5.612 15 Si 0.779 3.221 16 H -0.221 1.221 17 H -0.160 1.160 18 H -0.245 1.245 19 C -0.013 4.013 20 H 0.025 0.975 21 C -0.053 4.053 22 N -0.363 5.363 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.410 13.910 7.583 16.445 hybrid contribution 0.036 -1.936 -0.059 1.937 sum -4.375 11.974 7.523 14.803 Atomic orbital electron populations 1.22877 0.80421 1.02846 1.00722 1.88027 1.20781 1.29316 1.95121 1.22301 0.95025 0.84151 0.95649 0.89670 1.22065 0.98564 0.99966 0.96161 1.21793 0.90729 0.96643 0.97323 1.62524 1.07034 1.52168 1.01629 1.20443 0.96211 0.88259 0.90224 0.87316 1.22267 0.98828 0.99811 0.99794 1.21542 1.03472 0.93960 1.31505 0.96537 1.25517 1.00676 0.94438 0.97346 1.70117 1.39979 1.03344 1.47800 0.85888 0.80759 0.77171 0.78257 1.22124 1.15952 1.24461 1.21348 0.94815 0.95568 0.89552 0.97489 1.21745 0.93138 0.96140 0.94294 1.59001 1.05629 1.08417 1.63282 1.21734 0.93107 1.01132 0.98109 0.93706 0.90271 0.92171 0.89026 0.91528 0.92365 0.98398 0.92172 0.95448 0.94977 0.93850 0.90061 0.94731 0.85323 0.84874 0.88256 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.82 113.37 1.23 1.91 16 2 O -0.41 -14.02 9.22 -148.98 -1.37 -15.39 16 3 C 0.09 2.41 2.93 30.67 0.09 2.50 16 4 H 0.09 1.81 7.79 -2.39 -0.02 1.79 16 5 C -0.13 -3.82 5.79 30.65 0.18 -3.65 16 6 C 0.06 2.56 4.65 86.33 0.40 2.96 16 7 N -0.51 -20.49 4.51 -850.38 -3.84 -24.32 16 8 C 0.16 7.26 1.43 44.17 0.06 7.32 16 9 H 0.11 5.03 4.20 -2.39 -0.01 5.02 16 10 C -0.15 -6.63 7.98 71.98 0.57 -6.06 16 11 C -0.47 -26.06 6.07 25.60 0.16 -25.91 16 12 H 0.02 1.08 6.08 -2.91 -0.02 1.06 16 13 C 0.01 0.84 5.45 84.65 0.46 1.30 16 14 N -0.97 -62.27 13.96 21.45 0.30 -61.97 16 15 Si 0.95 47.35 24.30 68.60 1.67 49.02 16 16 H -0.29 -14.62 6.94 99.48 0.69 -13.93 16 17 H -0.24 -10.74 6.53 99.48 0.65 -10.09 16 18 H -0.32 -16.02 7.11 99.48 0.71 -15.32 16 19 C 0.10 3.60 1.73 44.94 0.08 3.67 16 20 H 0.01 0.34 6.33 -2.39 -0.02 0.32 16 21 C 0.08 2.52 5.99 86.30 0.52 3.04 16 22 N -0.83 -30.83 5.28 -186.70 -0.99 -31.81 16 23 C -0.10 -2.90 5.10 30.65 0.16 -2.74 16 24 H 0.04 1.01 7.84 -2.38 -0.02 0.99 16 25 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.06 1.15 8.09 -2.38 -0.02 1.13 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 29 H 0.06 2.34 6.09 -2.38 -0.01 2.33 16 30 H 0.00 -0.12 6.49 -2.38 -0.02 -0.13 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 1.24 3.51 -2.39 -0.01 1.24 16 33 H 0.03 1.45 6.65 -2.39 -0.02 1.44 16 34 H 0.25 15.59 8.31 -92.70 -0.77 14.82 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.03 0.98 8.13 -2.39 -0.02 0.96 16 37 H 0.33 10.29 9.08 -89.69 -0.81 9.48 16 38 H 0.34 14.25 8.41 -89.70 -0.75 13.49 16 39 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -69.71 289.44 -0.93 -70.64 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.60 Total: 29.51 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.90 Total: -15.66 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -4.52 Total: -118.11 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.37 Total: -15.39 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -69.71 -0.93 -70.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.722 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds