Wall clock time and date at job start Mon Mar 30 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00161 * 2 1 4 4 H 1.08996 * 109.57590 * 29.83772 * 3 2 1 5 5 C 1.53121 * 109.51810 * 269.68313 * 3 2 1 6 6 C 1.53038 * 109.27497 * 182.44156 * 5 3 2 7 7 N 1.46845 * 109.52544 * 59.17737 * 6 5 3 8 8 C 1.46902 * 110.99764 * 174.16147 * 7 6 5 9 9 H 1.09008 * 109.46726 * 180.87816 * 8 7 6 10 10 C 1.53002 * 109.47312 * 60.87713 * 8 7 6 11 11 C 1.50701 * 109.47204 * 300.87145 * 8 7 6 12 12 H 1.08001 * 120.00173 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00125 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99735 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46993 * 90.00645 * 15 13 11 17 17 H 1.48494 * 109.47291 * 210.00546 * 15 13 11 18 18 H 1.48497 * 109.47226 * 330.00968 * 15 13 11 19 19 C 1.46847 * 111.19746 * 298.25563 * 7 6 5 20 20 H 1.09001 * 109.46469 * 301.72676 * 19 7 6 21 21 C 1.52998 * 109.45952 * 181.74773 * 19 7 6 22 22 N 1.46903 * 109.46865 * 177.05939 * 21 19 7 23 23 C 1.53032 * 109.52290 * 61.74419 * 19 7 6 24 24 H 1.08995 * 109.47211 * 59.99974 * 1 2 3 25 25 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47425 * 300.00549 * 1 2 3 27 27 H 1.08999 * 109.50488 * 62.50035 * 5 3 2 28 28 H 1.09003 * 109.50320 * 302.37780 * 5 3 2 29 29 H 1.08997 * 109.46318 * 299.15885 * 6 5 3 30 30 H 1.09003 * 109.45980 * 179.19425 * 6 5 3 31 31 H 1.08997 * 109.47106 * 54.76539 * 10 8 7 32 32 H 1.08998 * 109.46612 * 174.76159 * 10 8 7 33 33 H 1.08997 * 109.46793 * 294.76068 * 10 8 7 34 34 H 0.97002 * 119.99896 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47527 * 297.05739 * 21 19 7 36 36 H 1.09000 * 109.47642 * 57.06334 * 21 19 7 37 37 H 1.00898 * 111.00202 * 184.70185 * 22 21 19 38 38 H 1.00902 * 110.99948 * 308.65391 * 22 21 19 39 39 H 1.09005 * 109.50717 * 60.75692 * 23 19 7 40 40 H 1.09003 * 109.50648 * 180.87750 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4432 6 6 2.9038 3.1415 -1.4368 7 7 4.1910 3.0494 -0.7360 8 6 4.9331 4.3137 -0.8301 9 1 5.8891 4.2129 -0.3160 10 6 4.1189 5.4329 -0.1779 11 6 5.1751 4.6475 -2.2796 12 1 4.8133 3.9868 -3.0536 13 6 5.8574 5.7969 -2.6177 14 7 6.2975 6.6017 -1.6752 15 14 6.1567 6.2111 -4.4144 16 1 5.0276 7.0270 -4.9290 17 1 7.4209 6.9797 -4.5413 18 1 6.2593 4.9560 -5.2013 19 6 4.0053 2.6512 0.6652 20 1 3.3596 3.3729 1.1654 21 6 5.3639 2.6099 1.3676 22 7 5.1718 2.2803 2.7862 23 6 3.3601 1.2646 0.7216 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.2632 1.8417 -1.9498 28 1 2.8595 1.0527 -1.9652 29 1 2.2632 3.8609 -0.9268 30 1 3.0716 3.4684 -2.4630 31 1 3.8645 5.1494 0.8434 32 1 4.7077 6.3500 -0.1644 33 1 3.2044 5.5965 -0.7481 34 1 6.7778 7.4102 -1.9131 35 1 5.9918 1.8514 0.9002 36 1 5.8464 3.5837 1.2831 37 1 6.0458 2.3219 3.2887 38 1 4.4831 2.8852 3.2080 39 1 4.0118 0.5398 0.2336 40 1 3.2082 0.9759 1.7617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252783036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:57 Heat of formation + Delta-G solvation = -43.450843 kcal Electronic energy + Delta-G solvation = -18953.856208 eV Core-core repulsion = 16189.439301 eV Total energy + Delta-G solvation = -2764.416907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -39.32458 -37.28340 -34.35975 -33.47845 -31.54343 -29.89045 -28.11800 -26.35845 -25.31828 -24.54558 -23.14472 -21.06399 -20.26724 -18.63870 -16.46331 -16.23421 -15.55497 -15.19014 -14.99220 -14.85690 -14.43087 -13.91628 -13.78286 -13.14203 -12.96343 -12.61936 -12.09950 -11.92883 -11.77232 -11.51147 -11.28662 -11.07107 -10.95729 -10.78419 -10.56554 -10.44149 -10.34610 -10.07111 -10.01158 -9.62490 -9.20750 -8.83820 -8.48204 -8.19735 -7.14524 -6.04116 -4.06947 3.28986 3.36043 3.40325 3.95084 4.38695 4.67961 5.10114 5.21352 5.27170 5.28815 5.38731 5.43978 5.52696 5.61643 5.66072 5.78989 5.93954 5.95856 6.12590 6.28786 6.30966 6.47020 6.52502 6.62576 6.66468 6.76454 6.81302 6.85319 7.10598 7.36614 7.44255 7.51871 7.64181 7.71387 7.81823 8.11296 8.35615 8.59621 8.98990 9.58116 11.03422 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.007337 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045151 B = 3815.281616 C = 4604.707150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.088 3.912 4 H 0.050 0.950 5 C -0.138 4.138 6 C 0.068 3.932 7 N -0.526 5.526 8 C 0.207 3.793 9 H 0.047 0.953 10 C -0.169 4.169 11 C -0.501 4.501 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.091 3.909 20 H 0.030 0.970 21 C 0.065 3.935 22 N -0.850 5.850 23 C -0.094 4.094 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.089 0.911 31 H 0.005 0.995 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.338 0.662 38 H 0.334 0.666 39 H 0.073 0.927 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -7.326 5.484 11.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.031 3.969 4 H 0.068 0.932 5 C -0.176 4.176 6 C -0.060 4.060 7 N -0.251 5.251 8 C 0.101 3.899 9 H 0.064 0.936 10 C -0.229 4.229 11 C -0.540 4.540 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.019 4.019 20 H 0.048 0.952 21 C -0.066 4.066 22 N -0.379 5.379 23 C -0.132 4.132 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.107 0.893 31 H 0.024 0.976 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.091 0.909 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.409 -8.401 4.986 12.261 hybrid contribution -0.247 2.286 -0.412 2.336 sum -7.656 -6.115 4.574 10.814 Atomic orbital electron populations 1.22706 0.82044 1.02054 0.99626 1.87906 1.18839 1.28726 1.95112 1.22312 0.95047 0.83357 0.96221 0.93199 1.22150 1.00080 0.98927 0.96431 1.21875 0.89826 0.93475 1.00867 1.62242 1.17934 1.35058 1.09852 1.19384 0.92137 0.81693 0.96679 0.93577 1.22389 1.00446 1.04473 0.95561 1.21142 1.35224 1.06121 0.91490 0.91866 1.24918 0.95639 0.96262 0.97385 1.69891 1.38459 1.13224 1.31865 0.86538 0.77513 0.78418 0.85206 1.20868 1.21310 1.19807 1.21408 0.94968 0.94733 0.90782 0.95213 1.21903 0.96985 1.00339 0.87333 1.58779 1.14170 1.61223 1.03767 1.21561 0.93962 0.97599 1.00119 0.94344 0.90160 0.94512 0.92673 0.90606 0.96028 0.89310 0.97556 0.89739 0.95129 0.93050 0.90476 0.93880 0.85071 0.85490 0.90858 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.39 -5.98 10.35 -35.23 -0.36 -6.34 16 3 C 0.09 1.40 2.68 -26.61 -0.07 1.33 16 4 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 5 C -0.14 -2.30 5.72 -26.65 -0.15 -2.45 16 6 C 0.07 1.33 4.70 -3.83 -0.02 1.31 16 7 N -0.53 -11.01 4.48 -220.14 -0.99 -12.00 16 8 C 0.21 5.02 1.93 -68.86 -0.13 4.88 16 9 H 0.05 1.22 5.95 -51.92 -0.31 0.91 16 10 C -0.17 -3.99 8.18 37.16 0.30 -3.69 16 11 C -0.50 -13.38 7.86 -34.44 -0.27 -13.65 16 12 H 0.06 1.70 6.64 -52.49 -0.35 1.35 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 14 N -0.90 -25.01 11.38 55.43 0.63 -24.38 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.09 1.64 1.55 -67.73 -0.10 1.53 16 20 H 0.03 0.56 6.58 -51.93 -0.34 0.22 16 21 C 0.06 1.12 5.89 -3.82 -0.02 1.09 16 22 N -0.85 -11.83 9.03 -10.37 -0.09 -11.92 16 23 C -0.09 -1.57 4.88 -26.65 -0.13 -1.70 16 24 H 0.04 0.42 7.96 -51.93 -0.41 0.00 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.43 6.77 -51.93 -0.35 0.07 16 30 H 0.09 1.88 6.24 -51.93 -0.32 1.55 16 31 H 0.01 0.12 6.36 -51.93 -0.33 -0.21 16 32 H 0.08 2.20 6.23 -51.93 -0.32 1.88 16 33 H 0.03 0.71 6.84 -51.93 -0.36 0.35 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.04 0.83 6.08 -51.93 -0.32 0.52 16 37 H 0.34 4.07 9.08 -39.29 -0.36 3.71 16 38 H 0.33 4.32 8.93 -39.29 -0.35 3.97 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -27.92 301.68 -7.47 -35.39 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.58 Total: 7.00 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 0.40 Total: -8.38 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.45 Total: -48.30 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.36 Total: -6.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.92 -7.47 -35.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.060 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds