Wall clock time and date at job start Mon Mar 30 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00161 * 2 1 4 4 H 1.08996 * 109.57590 * 29.83772 * 3 2 1 5 5 C 1.53121 * 109.51810 * 269.68313 * 3 2 1 6 6 C 1.53038 * 109.27497 * 182.44156 * 5 3 2 7 7 N 1.46845 * 109.52544 * 59.17737 * 6 5 3 8 8 C 1.46902 * 110.99764 * 174.16147 * 7 6 5 9 9 H 1.09008 * 109.46726 * 180.87816 * 8 7 6 10 10 C 1.53002 * 109.47312 * 60.87713 * 8 7 6 11 11 C 1.50701 * 109.47204 * 300.87145 * 8 7 6 12 12 H 1.08001 * 120.00173 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00125 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99735 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00159 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46993 * 90.00645 * 15 13 11 17 17 H 1.48494 * 109.47291 * 210.00546 * 15 13 11 18 18 H 1.48497 * 109.47226 * 330.00968 * 15 13 11 19 19 C 1.46847 * 111.19746 * 298.25563 * 7 6 5 20 20 H 1.09001 * 109.46469 * 301.72676 * 19 7 6 21 21 C 1.52998 * 109.45952 * 181.74773 * 19 7 6 22 22 N 1.46903 * 109.46865 * 177.05939 * 21 19 7 23 23 C 1.53032 * 109.52290 * 61.74419 * 19 7 6 24 24 H 1.08995 * 109.47211 * 59.99974 * 1 2 3 25 25 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47425 * 300.00549 * 1 2 3 27 27 H 1.08999 * 109.50488 * 62.50035 * 5 3 2 28 28 H 1.09003 * 109.50320 * 302.37780 * 5 3 2 29 29 H 1.08997 * 109.46318 * 299.15885 * 6 5 3 30 30 H 1.09003 * 109.45980 * 179.19425 * 6 5 3 31 31 H 1.08997 * 109.47106 * 54.76539 * 10 8 7 32 32 H 1.08998 * 109.46612 * 174.76159 * 10 8 7 33 33 H 1.08997 * 109.46793 * 294.76068 * 10 8 7 34 34 H 0.97002 * 119.99896 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47527 * 297.05739 * 21 19 7 36 36 H 1.09000 * 109.47642 * 57.06334 * 21 19 7 37 37 H 1.00898 * 111.00202 * 184.70185 * 22 21 19 38 38 H 1.00902 * 110.99948 * 308.65391 * 22 21 19 39 39 H 1.09005 * 109.50717 * 60.75692 * 23 19 7 40 40 H 1.09003 * 109.50648 * 180.87750 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4432 6 6 2.9038 3.1415 -1.4368 7 7 4.1910 3.0494 -0.7360 8 6 4.9331 4.3137 -0.8301 9 1 5.8891 4.2129 -0.3160 10 6 4.1189 5.4329 -0.1779 11 6 5.1751 4.6475 -2.2796 12 1 4.8133 3.9868 -3.0536 13 6 5.8574 5.7969 -2.6177 14 7 6.2975 6.6017 -1.6752 15 14 6.1567 6.2111 -4.4144 16 1 5.0276 7.0270 -4.9290 17 1 7.4209 6.9797 -4.5413 18 1 6.2593 4.9560 -5.2013 19 6 4.0053 2.6512 0.6652 20 1 3.3596 3.3729 1.1654 21 6 5.3639 2.6099 1.3676 22 7 5.1718 2.2803 2.7862 23 6 3.3601 1.2646 0.7216 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.2632 1.8417 -1.9498 28 1 2.8595 1.0527 -1.9652 29 1 2.2632 3.8609 -0.9268 30 1 3.0716 3.4684 -2.4630 31 1 3.8645 5.1494 0.8434 32 1 4.7077 6.3500 -0.1644 33 1 3.2044 5.5965 -0.7481 34 1 6.7778 7.4102 -1.9131 35 1 5.9918 1.8514 0.9002 36 1 5.8464 3.5837 1.2831 37 1 6.0458 2.3219 3.2887 38 1 4.4831 2.8852 3.2080 39 1 4.0118 0.5398 0.2336 40 1 3.2082 0.9759 1.7617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252783036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:54 Heat of formation + Delta-G solvation = -64.285181 kcal Electronic energy + Delta-G solvation = -18954.759652 eV Core-core repulsion = 16189.439301 eV Total energy + Delta-G solvation = -2765.320351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.79055 -38.58297 -35.93350 -35.04701 -33.30349 -31.26762 -29.79133 -27.51322 -27.24614 -25.93798 -24.68780 -22.67973 -21.71306 -20.22204 -18.26438 -17.67820 -16.98152 -16.64403 -16.42325 -16.20575 -15.78782 -15.60136 -15.12571 -14.63607 -14.41525 -14.25030 -13.70344 -13.45880 -13.16781 -13.08729 -12.80612 -12.75182 -12.59920 -12.49132 -12.28900 -12.03263 -11.88548 -11.71940 -11.49992 -11.22976 -10.86409 -10.50431 -10.32613 -9.53949 -8.83075 -8.11013 -6.20061 1.41259 1.43146 1.53120 2.42817 2.82873 3.17908 3.21105 3.83922 3.84724 3.93167 4.15921 4.17735 4.36521 4.49368 4.52025 4.53966 4.59497 4.65471 4.74619 4.85053 4.85340 4.89534 4.97918 5.08475 5.10071 5.14350 5.15879 5.30102 5.43139 5.58755 5.73767 5.80136 6.17232 6.21057 6.33403 6.48969 6.62135 6.79915 6.94014 7.48814 8.95427 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.007337 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045151 B = 3815.281616 C = 4604.707150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.094 3.906 4 H 0.061 0.939 5 C -0.128 4.128 6 C 0.071 3.929 7 N -0.536 5.536 8 C 0.214 3.786 9 H 0.021 0.979 10 C -0.153 4.153 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.014 3.986 14 N -0.920 5.920 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.093 3.907 20 H 0.029 0.971 21 C 0.075 3.925 22 N -0.840 5.840 23 C -0.085 4.085 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.351 0.649 38 H 0.343 0.657 39 H 0.059 0.941 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 -8.221 5.763 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C 0.037 3.963 4 H 0.079 0.921 5 C -0.167 4.167 6 C -0.057 4.057 7 N -0.261 5.261 8 C 0.107 3.893 9 H 0.039 0.961 10 C -0.212 4.212 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.185 4.185 14 N -0.560 5.560 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.016 4.016 20 H 0.047 0.953 21 C -0.056 4.056 22 N -0.371 5.371 23 C -0.123 4.123 24 H 0.064 0.936 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.789 -9.312 5.279 13.850 hybrid contribution 0.143 2.511 -0.453 2.555 sum -8.645 -6.802 4.826 12.013 Atomic orbital electron populations 1.22967 0.79908 1.03768 1.00559 1.87881 1.21172 1.28020 1.95163 1.22153 0.94831 0.84130 0.95235 0.92097 1.22051 1.00466 0.96615 0.97527 1.21825 0.89252 0.95308 0.99354 1.62149 1.18782 1.33173 1.11983 1.19117 0.91722 0.83339 0.95157 0.96147 1.22166 0.99512 1.02984 0.96582 1.21420 1.35173 1.06125 0.92679 0.92578 1.25629 0.95534 0.96252 1.01074 1.70012 1.38983 1.13505 1.33497 0.85604 0.77425 0.78117 0.80771 1.20261 1.21067 1.19562 1.21441 0.95465 0.95603 0.89056 0.95271 1.21665 0.96165 0.98526 0.89238 1.58712 1.15249 1.61019 1.02084 1.21445 0.94212 0.95831 1.00807 0.93642 0.88183 0.93308 0.90524 0.91814 0.96086 0.91478 0.95625 0.92397 0.95497 0.93081 0.91607 0.96470 0.83626 0.84476 0.92266 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.70 16 2 O -0.40 -11.38 10.35 -148.98 -1.54 -12.92 16 3 C 0.09 2.78 2.68 30.67 0.08 2.86 16 4 H 0.06 1.68 7.79 -2.39 -0.02 1.66 16 5 C -0.13 -4.09 5.72 30.65 0.18 -3.92 16 6 C 0.07 2.73 4.70 86.33 0.41 3.14 16 7 N -0.54 -22.52 4.48 -850.38 -3.81 -26.34 16 8 C 0.21 10.55 1.93 44.17 0.09 10.64 16 9 H 0.02 1.13 5.95 -2.38 -0.01 1.11 16 10 C -0.15 -7.28 8.18 71.98 0.59 -6.69 16 11 C -0.52 -27.99 7.86 25.60 0.20 -27.79 16 12 H 0.06 3.06 6.64 -2.91 -0.02 3.04 16 13 C 0.01 0.75 5.30 84.66 0.45 1.19 16 14 N -0.92 -52.24 11.38 21.45 0.24 -51.99 16 15 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.09 3.31 1.55 44.94 0.07 3.38 16 20 H 0.03 1.05 6.58 -2.39 -0.02 1.04 16 21 C 0.08 2.58 5.89 86.30 0.51 3.09 16 22 N -0.84 -22.11 9.03 -186.71 -1.69 -23.80 16 23 C -0.08 -2.69 4.88 30.65 0.15 -2.55 16 24 H 0.04 0.84 7.96 -2.39 -0.02 0.82 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 0.86 8.09 -2.38 -0.02 0.84 16 27 H 0.08 2.11 7.96 -2.39 -0.02 2.09 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.02 0.81 6.77 -2.39 -0.02 0.79 16 30 H 0.07 2.86 6.24 -2.39 -0.01 2.84 16 31 H 0.02 1.07 6.36 -2.39 -0.02 1.06 16 32 H 0.06 3.07 6.23 -2.39 -0.01 3.06 16 33 H 0.03 1.25 6.84 -2.39 -0.02 1.23 16 34 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.02 0.68 6.08 -2.39 -0.01 0.66 16 37 H 0.35 7.91 9.08 -89.70 -0.81 7.09 16 38 H 0.34 8.20 8.93 -89.69 -0.80 7.40 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.08 2.49 7.71 -2.39 -0.02 2.47 16 Total: -1.00 -59.46 301.68 -1.41 -60.87 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.58 Total: 23.53 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 3.94 Total: -14.95 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -5.26 Total: -102.13 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.54 Total: -12.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.46 -1.41 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252783036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.419 kcal (2) G-P(sol) polarization free energy of solvation -59.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds