Wall clock time and date at job start Mon Mar 30 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46742 * 2 1 4 4 C 1.50699 * 109.46843 * 119.99788 * 2 1 3 5 5 H 1.07997 * 120.00173 * 120.00090 * 4 2 1 6 6 C 1.37877 * 119.99953 * 299.99899 * 4 2 1 7 7 N 1.31518 * 119.99884 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46750 * 89.99954 * 8 6 4 10 10 H 1.48495 * 109.47081 * 209.99983 * 8 6 4 11 11 H 1.48497 * 109.47082 * 329.99972 * 8 6 4 12 12 N 1.46897 * 109.46940 * 239.99810 * 2 1 3 13 13 C 1.46909 * 110.99591 * 179.57789 * 12 2 1 14 14 C 1.52999 * 109.46723 * 163.51387 * 13 12 2 15 15 O 1.42903 * 109.47164 * 67.51774 * 14 13 12 16 16 C 1.46899 * 111.00425 * 55.62337 * 12 2 1 17 17 C 1.53000 * 109.46869 * 70.40662 * 16 12 2 18 18 H 1.08997 * 110.33188 * 57.60763 * 17 16 12 19 19 C 1.54914 * 110.37065 * 179.97438 * 17 16 12 20 20 C 1.55135 * 101.65193 * 155.90230 * 19 17 16 21 21 C 1.54322 * 103.01860 * 324.34276 * 20 19 17 22 22 N 1.47443 * 107.23368 * 22.28668 * 21 20 19 23 23 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47022 * 300.00444 * 1 2 3 25 25 H 1.09007 * 109.46634 * 60.00281 * 1 2 3 26 26 H 0.97008 * 119.99916 * 179.97438 * 7 6 4 27 27 H 1.08992 * 109.46806 * 43.51259 * 13 12 2 28 28 H 1.08998 * 109.46533 * 283.51369 * 13 12 2 29 29 H 1.08999 * 109.47492 * 307.51442 * 14 13 12 30 30 H 1.08999 * 109.46827 * 187.51324 * 14 13 12 31 31 H 0.96696 * 114.00038 * 174.98915 * 15 14 13 32 32 H 1.08995 * 109.46957 * 190.40751 * 16 12 2 33 33 H 1.09000 * 109.46755 * 310.40688 * 16 12 2 34 34 H 1.09001 * 110.98494 * 273.99069 * 19 17 16 35 35 H 1.08991 * 110.98921 * 37.80921 * 19 17 16 36 36 H 1.09004 * 110.70539 * 205.96297 * 20 19 17 37 37 H 1.09001 * 110.86025 * 82.79497 * 20 19 17 38 38 H 1.08997 * 109.88815 * 262.87675 * 21 20 19 39 39 H 1.09002 * 110.01984 * 141.76892 * 21 20 19 40 40 H 1.00897 * 110.99863 * 238.71895 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3443 -0.9487 5.1123 11 1 2.4879 -2.5652 3.7124 12 7 2.0197 -0.6925 -1.1994 13 6 3.4882 -0.7034 -1.2384 14 6 3.9639 -1.7557 -2.2419 15 8 3.6047 -1.3497 -3.5642 16 6 1.4651 -0.0896 -2.4188 17 6 2.0873 1.2917 -2.6331 18 1 3.1726 1.2125 -2.6959 19 6 1.5168 1.9469 -3.9157 20 6 1.7373 3.4542 -3.6221 21 6 1.4904 3.5521 -2.1019 22 7 1.7002 2.2061 -1.5377 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7080 1.1611 3.4843 27 1 3.8761 -0.9436 -0.2485 28 1 3.8507 0.2786 -1.5422 29 1 3.4938 -2.7126 -2.0154 30 1 5.0470 -1.8581 -2.1750 31 1 3.9416 -1.9312 -4.2593 32 1 1.6909 -0.7265 -3.2740 33 1 0.3847 0.0106 -2.3155 34 1 2.0779 1.6345 -4.7964 35 1 0.4564 1.7225 -4.0302 36 1 1.0174 4.0628 -4.1694 37 1 2.7568 3.7522 -3.8669 38 1 0.4678 3.8782 -1.9126 39 1 2.1926 4.2554 -1.6543 40 1 0.8698 1.8772 -1.0685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300058177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:58 Heat of formation + Delta-G solvation = -24.985854 kcal Electronic energy + Delta-G solvation = -19300.034562 eV Core-core repulsion = 16536.418357 eV Total energy + Delta-G solvation = -2763.616205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.13562 -36.78870 -35.44365 -32.69611 -30.12086 -29.68391 -29.19741 -26.71578 -25.35421 -23.63813 -21.35136 -20.59135 -20.11109 -18.81957 -17.17252 -16.45523 -15.55352 -15.33501 -14.90262 -14.57337 -13.81954 -13.42370 -13.29674 -13.07883 -12.97078 -12.14276 -11.88171 -11.52104 -11.39332 -11.21141 -11.01126 -10.97127 -10.85311 -10.64497 -10.56252 -10.33788 -10.11250 -9.96921 -9.88725 -9.71656 -9.23053 -8.78443 -8.30551 -7.68462 -6.81225 -5.89075 -3.91025 3.36064 3.42695 3.46178 4.49889 4.72308 4.78830 5.04913 5.11594 5.23979 5.41446 5.48092 5.68159 5.76829 5.81472 5.92619 5.96829 6.02179 6.10412 6.15189 6.20376 6.34571 6.44359 6.57855 6.66403 6.80823 6.90682 7.01282 7.17455 7.27450 7.51987 7.71311 7.92280 7.98180 8.02808 8.11977 8.38081 8.51030 8.79307 9.16197 9.71742 11.17335 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.008824 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.723816 B = 3172.231407 C = 4009.405815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.183 3.817 3 H 0.056 0.944 4 C -0.498 4.498 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.891 3.109 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.525 5.525 13 C 0.055 3.945 14 C 0.079 3.921 15 O -0.567 6.567 16 C 0.045 3.955 17 C 0.049 3.951 18 H 0.087 0.913 19 C -0.144 4.144 20 C -0.139 4.139 21 C 0.042 3.958 22 N -0.676 5.676 23 H 0.031 0.969 24 H 0.085 0.915 25 H 0.003 0.997 26 H 0.258 0.742 27 H 0.095 0.905 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.361 0.639 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 0.559 -11.695 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 H 0.073 0.927 4 C -0.537 4.537 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.720 3.280 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.201 1.201 12 N -0.248 5.248 13 C -0.074 4.074 14 C 0.001 3.999 15 O -0.371 6.371 16 C -0.084 4.084 17 C -0.062 4.062 18 H 0.104 0.896 19 C -0.184 4.184 20 C -0.178 4.178 21 C -0.087 4.087 22 N -0.311 5.311 23 H 0.050 0.950 24 H 0.104 0.896 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.207 0.793 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.690 0.774 -10.889 11.243 hybrid contribution 0.000 -0.163 0.115 0.199 sum 2.691 0.612 -10.774 11.122 Atomic orbital electron populations 1.21964 0.98829 0.99422 0.99313 1.19801 0.91495 0.95400 0.85592 0.92723 1.21152 1.30581 1.11853 0.90088 0.92452 1.24881 0.95459 0.95133 0.98729 1.69884 1.37118 1.23040 1.23027 0.86615 0.78427 0.80005 0.82994 1.20957 1.21463 1.20106 1.62322 1.05764 1.54270 1.02488 1.22141 0.90516 0.96613 0.98098 1.22423 0.96477 0.98712 0.82255 1.86622 1.78844 1.55444 1.16229 1.22626 0.98429 0.92095 0.95262 1.23251 1.01115 0.93794 0.88011 0.89569 1.23116 1.00784 0.94982 0.99538 1.22755 1.01298 0.96794 0.96939 1.22655 0.99566 0.93650 0.92864 1.62334 1.41766 1.01111 1.25911 0.94993 0.89622 0.97781 0.93251 0.88658 0.94181 0.93348 0.94735 0.79341 0.89559 0.92012 0.91370 0.92015 0.91961 0.91635 0.93846 0.91592 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.91 37.16 0.29 -3.03 16 2 C 0.18 4.53 1.40 -68.86 -0.10 4.43 16 3 H 0.06 1.46 5.10 -51.93 -0.27 1.20 16 4 C -0.50 -13.60 7.70 -34.44 -0.27 -13.86 16 5 H 0.06 1.57 6.86 -52.49 -0.36 1.21 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.53 -11.32 4.52 -228.04 -1.03 -12.36 16 13 C 0.05 1.09 5.10 -3.82 -0.02 1.07 16 14 C 0.08 1.25 7.33 37.16 0.27 1.52 16 15 O -0.57 -8.14 10.77 -35.23 -0.38 -8.52 16 16 C 0.05 0.86 4.31 -3.82 -0.02 0.84 16 17 C 0.05 0.88 2.89 -66.18 -0.19 0.69 16 18 H 0.09 1.67 5.98 -51.93 -0.31 1.36 16 19 C -0.14 -2.15 6.50 -24.59 -0.16 -2.31 16 20 C -0.14 -1.94 6.94 -24.91 -0.17 -2.12 16 21 C 0.04 0.69 7.58 -2.83 -0.02 0.67 16 22 N -0.68 -13.27 5.18 -103.84 -0.54 -13.81 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 25 H 0.00 0.08 5.00 -51.93 -0.26 -0.18 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.10 2.06 6.15 -51.93 -0.32 1.74 16 28 H 0.04 0.83 5.48 -51.93 -0.28 0.54 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.36 3.43 9.12 45.56 0.42 3.85 16 32 H 0.09 1.57 5.81 -51.93 -0.30 1.27 16 33 H 0.06 1.21 5.66 -51.93 -0.29 0.92 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.36 7.56 4.58 -39.29 -0.18 7.38 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -29.03 292.91 -7.81 -36.84 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.41 Total: 12.23 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.47 Total: -10.57 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.94 Total: -50.87 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.38 Total: -8.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.03 -7.81 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300058177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.857 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds