Wall clock time and date at job start Mon Mar 30 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46742 * 2 1 4 4 C 1.50699 * 109.46843 * 119.99788 * 2 1 3 5 5 H 1.07997 * 120.00173 * 120.00090 * 4 2 1 6 6 C 1.37877 * 119.99953 * 299.99899 * 4 2 1 7 7 N 1.31518 * 119.99884 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46750 * 89.99954 * 8 6 4 10 10 H 1.48495 * 109.47081 * 209.99983 * 8 6 4 11 11 H 1.48497 * 109.47082 * 329.99972 * 8 6 4 12 12 N 1.46897 * 109.46940 * 239.99810 * 2 1 3 13 13 C 1.46909 * 110.99591 * 179.57789 * 12 2 1 14 14 C 1.52999 * 109.46723 * 163.51387 * 13 12 2 15 15 O 1.42903 * 109.47164 * 67.51774 * 14 13 12 16 16 C 1.46899 * 111.00425 * 55.62337 * 12 2 1 17 17 C 1.53000 * 109.46869 * 70.40662 * 16 12 2 18 18 H 1.08997 * 110.33188 * 57.60763 * 17 16 12 19 19 C 1.54914 * 110.37065 * 179.97438 * 17 16 12 20 20 C 1.55135 * 101.65193 * 155.90230 * 19 17 16 21 21 C 1.54322 * 103.01860 * 324.34276 * 20 19 17 22 22 N 1.47443 * 107.23368 * 22.28668 * 21 20 19 23 23 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47022 * 300.00444 * 1 2 3 25 25 H 1.09007 * 109.46634 * 60.00281 * 1 2 3 26 26 H 0.97008 * 119.99916 * 179.97438 * 7 6 4 27 27 H 1.08992 * 109.46806 * 43.51259 * 13 12 2 28 28 H 1.08998 * 109.46533 * 283.51369 * 13 12 2 29 29 H 1.08999 * 109.47492 * 307.51442 * 14 13 12 30 30 H 1.08999 * 109.46827 * 187.51324 * 14 13 12 31 31 H 0.96696 * 114.00038 * 174.98915 * 15 14 13 32 32 H 1.08995 * 109.46957 * 190.40751 * 16 12 2 33 33 H 1.09000 * 109.46755 * 310.40688 * 16 12 2 34 34 H 1.09001 * 110.98494 * 273.99069 * 19 17 16 35 35 H 1.08991 * 110.98921 * 37.80921 * 19 17 16 36 36 H 1.09004 * 110.70539 * 205.96297 * 20 19 17 37 37 H 1.09001 * 110.86025 * 82.79497 * 20 19 17 38 38 H 1.08997 * 109.88815 * 262.87675 * 21 20 19 39 39 H 1.09002 * 110.01984 * 141.76892 * 21 20 19 40 40 H 1.00897 * 110.99863 * 238.71895 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3443 -0.9487 5.1123 11 1 2.4879 -2.5652 3.7124 12 7 2.0197 -0.6925 -1.1994 13 6 3.4882 -0.7034 -1.2384 14 6 3.9639 -1.7557 -2.2419 15 8 3.6047 -1.3497 -3.5642 16 6 1.4651 -0.0896 -2.4188 17 6 2.0873 1.2917 -2.6331 18 1 3.1726 1.2125 -2.6959 19 6 1.5168 1.9469 -3.9157 20 6 1.7373 3.4542 -3.6221 21 6 1.4904 3.5521 -2.1019 22 7 1.7002 2.2061 -1.5377 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7080 1.1611 3.4843 27 1 3.8761 -0.9436 -0.2485 28 1 3.8507 0.2786 -1.5422 29 1 3.4938 -2.7126 -2.0154 30 1 5.0470 -1.8581 -2.1750 31 1 3.9416 -1.9312 -4.2593 32 1 1.6909 -0.7265 -3.2740 33 1 0.3847 0.0106 -2.3155 34 1 2.0779 1.6345 -4.7964 35 1 0.4564 1.7225 -4.0302 36 1 1.0174 4.0628 -4.1694 37 1 2.7568 3.7522 -3.8669 38 1 0.4678 3.8782 -1.9126 39 1 2.1926 4.2554 -1.6543 40 1 0.8698 1.8772 -1.0685 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300058177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:57 Heat of formation + Delta-G solvation = -47.352899 kcal Electronic energy + Delta-G solvation = -19301.004470 eV Core-core repulsion = 16536.418357 eV Total energy + Delta-G solvation = -2764.586112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62635 -38.10166 -36.91366 -34.64003 -31.77635 -31.15034 -30.64800 -28.25118 -27.29175 -25.28023 -22.83888 -21.83954 -21.73198 -20.45486 -18.47866 -18.30758 -17.05163 -16.82645 -16.56317 -16.15998 -15.46780 -14.87438 -14.76243 -14.55702 -14.37125 -13.76807 -13.52794 -13.06338 -12.90213 -12.87705 -12.69896 -12.61467 -12.47420 -12.20601 -12.14279 -11.92525 -11.72703 -11.70321 -11.48300 -11.25756 -10.81356 -10.51601 -10.38574 -9.14681 -8.53831 -7.99219 -6.07448 1.43455 1.44567 1.54163 2.48459 3.25542 3.38068 3.58387 3.69045 3.86826 3.95397 4.13524 4.33621 4.43794 4.47231 4.61938 4.63770 4.69524 4.75973 4.89730 4.95574 5.02053 5.04039 5.10660 5.13155 5.18387 5.26676 5.31573 5.44375 5.53594 5.69158 5.87329 5.98204 6.25486 6.42642 6.53267 6.62018 6.95650 7.08828 7.13183 7.58895 9.05326 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.008824 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.723816 B = 3172.231407 C = 4009.405815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.189 3.811 3 H 0.037 0.963 4 C -0.512 4.512 5 H 0.050 0.950 6 C 0.012 3.988 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.534 5.534 13 C 0.054 3.946 14 C 0.093 3.907 15 O -0.576 6.576 16 C 0.051 3.949 17 C 0.054 3.946 18 H 0.072 0.928 19 C -0.137 4.137 20 C -0.129 4.129 21 C 0.036 3.964 22 N -0.702 5.702 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.025 0.975 26 H 0.257 0.743 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.387 0.613 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 0.259 -13.351 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.551 4.551 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.257 5.257 13 C -0.074 4.074 14 C 0.015 3.985 15 O -0.384 6.384 16 C -0.077 4.077 17 C -0.057 4.057 18 H 0.090 0.910 19 C -0.176 4.176 20 C -0.167 4.167 21 C -0.093 4.093 22 N -0.336 5.336 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.236 0.463 -12.586 13.003 hybrid contribution -0.137 -0.055 0.574 0.593 sum 3.099 0.408 -12.011 12.411 Atomic orbital electron populations 1.21752 0.98737 0.98484 0.99108 1.19569 0.91469 0.94405 0.86358 0.94626 1.21465 1.30413 1.11721 0.91517 0.93207 1.25585 0.95794 0.95884 1.01392 1.70013 1.37992 1.24118 1.23424 0.85674 0.77873 0.79033 0.79671 1.20583 1.21219 1.19689 1.62280 1.06873 1.54160 1.02361 1.22107 0.89434 0.97547 0.98304 1.22109 0.97739 0.96499 0.82110 1.86520 1.79279 1.56452 1.16168 1.22599 0.97713 0.93054 0.94372 1.23112 1.00160 0.93132 0.89289 0.91000 1.23061 1.01081 0.95155 0.98333 1.22711 1.02498 0.96560 0.94942 1.22746 0.99820 0.91955 0.94779 1.62254 1.41230 1.02790 1.27357 0.96030 0.92164 0.95622 0.93394 0.91220 0.95223 0.93699 0.92110 0.76383 0.88246 0.92870 0.89630 0.91543 0.89463 0.90952 0.93332 0.92043 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 7.91 71.98 0.57 -5.49 16 2 C 0.19 9.53 1.40 44.17 0.06 9.60 16 3 H 0.04 1.98 5.10 -2.39 -0.01 1.97 16 4 C -0.51 -28.55 7.70 25.60 0.20 -28.35 16 5 H 0.05 2.78 6.86 -2.91 -0.02 2.76 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.87 16 8 Si 0.95 44.67 29.54 68.60 2.03 46.69 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 N -0.53 -23.03 4.52 -875.37 -3.96 -26.99 16 13 C 0.05 2.16 5.10 86.30 0.44 2.60 16 14 C 0.09 2.77 7.33 71.98 0.53 3.30 16 15 O -0.58 -14.94 10.77 -148.98 -1.60 -16.54 16 16 C 0.05 1.90 4.31 86.30 0.37 2.27 16 17 C 0.05 1.86 2.89 45.39 0.13 1.99 16 18 H 0.07 2.72 5.98 -2.39 -0.01 2.71 16 19 C -0.14 -3.70 6.50 31.98 0.21 -3.49 16 20 C -0.13 -3.24 6.94 31.77 0.22 -3.02 16 21 C 0.04 1.15 7.58 86.65 0.66 1.80 16 22 N -0.70 -27.58 5.18 -482.44 -2.50 -30.08 16 23 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 25 H 0.03 1.11 5.00 -2.38 -0.01 1.10 16 26 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 27 H 0.07 3.08 6.15 -2.39 -0.01 3.07 16 28 H 0.03 1.23 5.48 -2.39 -0.01 1.22 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.39 5.95 9.12 -74.06 -0.68 5.28 16 32 H 0.10 3.42 5.81 -2.39 -0.01 3.40 16 33 H 0.05 2.04 5.66 -2.39 -0.01 2.03 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.34 14.76 4.58 -89.70 -0.41 14.35 16 Total: -1.00 -62.82 292.91 -2.00 -64.82 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.04 Total: 32.66 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.83 Total: -17.68 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -6.22 Total: -109.95 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.60 Total: -16.54 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -62.82 -2.00 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300058177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.466 kcal (2) G-P(sol) polarization free energy of solvation -62.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds