Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47249 * 2 1 4 4 O 1.42908 * 109.46974 * 119.99764 * 2 1 3 5 5 C 1.52995 * 109.47385 * 239.99351 * 2 1 3 6 6 C 1.52994 * 109.47212 * 174.99811 * 5 2 1 7 7 C 1.53006 * 109.47083 * 180.02562 * 6 5 2 8 8 N 1.46903 * 109.47091 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99623 * 294.29766 * 8 7 6 10 10 C 1.53237 * 109.33684 * 172.74746 * 9 8 7 11 11 N 1.47076 * 108.52149 * 53.83276 * 10 9 8 12 12 C 1.36939 * 120.88220 * 128.83758 * 11 10 9 13 13 H 1.08000 * 119.99888 * 333.48401 * 12 11 10 14 14 C 1.38806 * 120.00292 * 153.48473 * 12 11 10 15 15 N 1.31622 * 119.99992 * 159.43795 * 14 12 11 16 16 Si 1.86798 * 120.00185 * 339.44414 * 14 12 11 17 17 H 1.48502 * 109.47397 * 91.96833 * 16 14 12 18 18 H 1.48500 * 109.47201 * 211.97606 * 16 14 12 19 19 H 1.48506 * 109.46971 * 331.97496 * 16 14 12 20 20 C 1.47081 * 118.23955 * 308.81078 * 11 10 9 21 21 C 1.46898 * 111.00157 * 169.99955 * 8 7 6 22 22 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47355 * 299.99970 * 1 2 3 24 24 H 1.08999 * 109.47079 * 60.00124 * 1 2 3 25 25 H 0.96698 * 113.99961 * 59.99945 * 4 2 1 26 26 H 1.09004 * 109.46645 * 55.00463 * 5 2 1 27 27 H 1.08997 * 109.47376 * 295.00542 * 5 2 1 28 28 H 1.08997 * 109.47546 * 300.00626 * 6 5 2 29 29 H 1.09004 * 109.46783 * 60.00736 * 6 5 2 30 30 H 1.09004 * 109.46813 * 299.99789 * 7 6 5 31 31 H 1.08990 * 109.47296 * 60.00378 * 7 6 5 32 32 H 1.08996 * 109.49301 * 292.70924 * 9 8 7 33 33 H 1.09003 * 109.48973 * 52.79343 * 9 8 7 34 34 H 1.09007 * 109.62913 * 294.11935 * 10 9 8 35 35 H 1.09008 * 109.62587 * 173.54489 * 10 9 8 36 36 H 0.97006 * 120.00097 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.63020 * 291.48027 * 20 11 10 38 38 H 1.08995 * 109.79170 * 170.98915 * 20 11 10 39 39 H 1.08998 * 109.49244 * 307.21480 * 21 8 7 40 40 H 1.09003 * 109.48963 * 67.28675 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7214 -1.2491 6 6 3.5648 -0.6133 -1.3135 7 6 4.0748 -1.3342 -2.5631 8 7 5.5389 -1.2310 -2.6246 9 6 5.9606 0.1626 -2.8198 10 6 7.4854 0.2532 -2.6975 11 7 8.0870 -0.7146 -3.6274 12 6 9.0615 -0.3299 -4.5091 13 1 9.1106 0.6949 -4.8463 14 6 9.9863 -1.2570 -4.9695 15 7 10.6494 -1.0279 -6.0832 16 14 10.2898 -2.8299 -4.0086 17 1 9.3964 -3.9012 -4.5178 18 1 11.7058 -3.2457 -4.1742 19 1 10.0084 -2.5931 -2.5698 20 6 7.6146 -2.1069 -3.5847 21 6 6.0847 -2.1045 -3.6720 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7210 -1.5952 1.2330 26 1 1.6055 -0.2618 -2.1369 27 1 1.7517 -1.7716 -1.2054 28 1 3.8532 0.4369 -1.3572 29 1 3.9994 -1.0729 -0.4258 30 1 3.7865 -2.3845 -2.5197 31 1 3.6403 -0.8744 -3.4506 32 1 5.6544 0.5000 -3.8100 33 1 5.4968 0.7926 -2.0608 34 1 7.7857 0.0157 -1.6769 35 1 7.8141 1.2604 -2.9540 36 1 11.2960 -1.6756 -6.4048 37 1 7.9272 -2.5711 -2.6494 38 1 8.0285 -2.6630 -4.4258 39 1 5.7108 -3.1186 -3.5312 40 1 5.7767 -1.7355 -4.6503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308839895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = -31.297908 kcal Electronic energy + Delta-G solvation = -18026.542400 eV Core-core repulsion = 15262.652484 eV Total energy + Delta-G solvation = -2763.889916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.69268 -37.92154 -35.10496 -33.04376 -31.54179 -30.59313 -30.16529 -27.25434 -24.82713 -23.45485 -22.39167 -21.62690 -20.91646 -19.35704 -16.90010 -16.53812 -16.19430 -15.48741 -14.94286 -14.52284 -14.46611 -14.07451 -13.99832 -13.74837 -13.31035 -12.93569 -12.49232 -12.35768 -12.07819 -11.94192 -11.64137 -11.47026 -11.43172 -10.99868 -10.84550 -10.74512 -10.38603 -10.24878 -10.17443 -10.01547 -9.70442 -9.41719 -8.61357 -7.92746 -6.91866 -5.91639 -3.26396 3.35304 3.52015 3.57513 4.06029 4.25730 4.56357 4.58082 4.77524 4.87145 5.00714 5.04887 5.26962 5.32122 5.36976 5.40020 5.55219 5.68708 5.71105 5.74500 5.78561 5.83965 5.87068 6.02840 6.05373 6.11660 6.22522 6.26346 6.39267 6.46896 6.62200 6.69920 6.93245 7.43245 7.51452 7.54021 7.98152 8.35754 8.96902 9.75494 10.15575 11.24523 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053533 B = 0.004492 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.914802 B = 6231.696979 C = 6352.815139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.101 3.899 3 H 0.097 0.903 4 O -0.562 6.562 5 C -0.150 4.150 6 C -0.112 4.112 7 C 0.055 3.945 8 N -0.535 5.535 9 C 0.040 3.960 10 C 0.151 3.849 11 N -0.609 5.609 12 C -0.258 4.258 13 H 0.085 0.915 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.884 3.116 17 H -0.289 1.289 18 H -0.304 1.304 19 H -0.269 1.269 20 C 0.130 3.870 21 C 0.044 3.956 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.373 0.627 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 -0.509 10.126 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.115 0.885 4 O -0.367 6.367 5 C -0.188 4.188 6 C -0.150 4.150 7 C -0.073 4.073 8 N -0.260 5.260 9 C -0.089 4.089 10 C 0.025 3.975 11 N -0.333 5.333 12 C -0.386 4.386 13 H 0.103 0.897 14 C -0.178 4.178 15 N -0.554 5.554 16 Si 0.715 3.285 17 H -0.217 1.217 18 H -0.232 1.232 19 H -0.194 1.194 20 C 0.004 3.996 21 C -0.086 4.086 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.220 0.780 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -18.702 -0.110 10.551 21.473 hybrid contribution -0.428 -1.220 -0.612 1.431 sum -19.131 -1.330 9.938 21.599 Atomic orbital electron populations 1.22518 0.96772 1.02406 1.02626 1.21935 0.92368 0.96901 0.84606 0.88478 1.86609 1.77247 1.28927 1.43944 1.22287 0.97098 1.01006 0.98406 1.21538 0.93561 1.01059 0.98821 1.22109 0.88556 1.00099 0.96558 1.61928 1.08114 1.08534 1.47433 1.22676 0.98709 0.88551 0.98987 1.21013 0.89583 0.93805 0.93068 1.44417 1.43468 1.04655 1.40808 1.18943 1.04743 0.97809 1.17127 0.89709 1.25261 0.97074 0.98194 0.97246 1.69843 1.28764 1.36878 1.19960 0.86936 0.75934 0.83822 0.81825 1.21653 1.23197 1.19431 1.21416 0.90935 0.87537 0.99677 1.22620 0.97981 0.95686 0.92289 0.92420 0.91958 0.91625 0.78042 0.91290 0.91735 0.91909 0.90529 0.91531 0.95628 0.95135 0.91330 0.95196 0.91760 0.92813 0.94991 0.90826 0.91799 0.94806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.53 37.16 0.35 -0.88 16 2 C 0.10 0.85 3.59 -26.73 -0.10 0.75 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.56 -5.46 12.88 -35.23 -0.45 -5.92 16 5 C -0.15 -1.30 4.89 -26.74 -0.13 -1.43 16 6 C -0.11 -1.29 5.04 -26.73 -0.13 -1.43 16 7 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 8 N -0.54 -9.25 4.63 -234.32 -1.08 -10.34 16 9 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 10 C 0.15 3.15 6.69 -3.61 -0.02 3.13 16 11 N -0.61 -15.17 2.82 -172.02 -0.48 -15.66 16 12 C -0.26 -7.43 10.08 -15.06 -0.15 -7.58 16 13 H 0.09 2.58 8.05 -52.49 -0.42 2.16 16 14 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 15 N -0.91 -28.43 13.97 55.49 0.78 -27.66 16 16 Si 0.88 22.96 24.31 -169.99 -4.13 18.83 16 17 H -0.29 -7.18 6.58 56.52 0.37 -6.81 16 18 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 19 H -0.27 -6.96 6.61 56.52 0.37 -6.59 16 20 C 0.13 2.99 4.35 -3.60 -0.02 2.97 16 21 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.37 2.33 9.05 45.56 0.41 2.74 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 6.40 -51.93 -0.33 0.42 16 29 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 30 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 34 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.06 1.30 7.95 -51.92 -0.41 0.89 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 38 H 0.07 1.81 4.61 -51.93 -0.24 1.57 16 39 H 0.06 1.06 7.99 -51.93 -0.41 0.65 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -32.32 307.01 -7.43 -39.75 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.33 Total: -1.92 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.35 Total: -1.72 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.79 Total: -53.65 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.45 Total: -5.92 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.13 Total: 18.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.32 -7.43 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308839895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.455 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds