Wall clock time and date at job start Mon Mar 30 2020 04:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47249 * 2 1 4 4 O 1.42908 * 109.46974 * 119.99764 * 2 1 3 5 5 C 1.52995 * 109.47385 * 239.99351 * 2 1 3 6 6 C 1.52994 * 109.47212 * 174.99811 * 5 2 1 7 7 C 1.53006 * 109.47083 * 180.02562 * 6 5 2 8 8 N 1.46903 * 109.47091 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99623 * 294.29766 * 8 7 6 10 10 C 1.53237 * 109.33684 * 172.74746 * 9 8 7 11 11 N 1.47076 * 108.52149 * 53.83276 * 10 9 8 12 12 C 1.36939 * 120.88220 * 128.83758 * 11 10 9 13 13 H 1.08000 * 119.99888 * 333.48401 * 12 11 10 14 14 C 1.38806 * 120.00292 * 153.48473 * 12 11 10 15 15 N 1.31622 * 119.99992 * 159.43795 * 14 12 11 16 16 Si 1.86798 * 120.00185 * 339.44414 * 14 12 11 17 17 H 1.48502 * 109.47397 * 91.96833 * 16 14 12 18 18 H 1.48500 * 109.47201 * 211.97606 * 16 14 12 19 19 H 1.48506 * 109.46971 * 331.97496 * 16 14 12 20 20 C 1.47081 * 118.23955 * 308.81078 * 11 10 9 21 21 C 1.46898 * 111.00157 * 169.99955 * 8 7 6 22 22 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47355 * 299.99970 * 1 2 3 24 24 H 1.08999 * 109.47079 * 60.00124 * 1 2 3 25 25 H 0.96698 * 113.99961 * 59.99945 * 4 2 1 26 26 H 1.09004 * 109.46645 * 55.00463 * 5 2 1 27 27 H 1.08997 * 109.47376 * 295.00542 * 5 2 1 28 28 H 1.08997 * 109.47546 * 300.00626 * 6 5 2 29 29 H 1.09004 * 109.46783 * 60.00736 * 6 5 2 30 30 H 1.09004 * 109.46813 * 299.99789 * 7 6 5 31 31 H 1.08990 * 109.47296 * 60.00378 * 7 6 5 32 32 H 1.08996 * 109.49301 * 292.70924 * 9 8 7 33 33 H 1.09003 * 109.48973 * 52.79343 * 9 8 7 34 34 H 1.09007 * 109.62913 * 294.11935 * 10 9 8 35 35 H 1.09008 * 109.62587 * 173.54489 * 10 9 8 36 36 H 0.97006 * 120.00097 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.63020 * 291.48027 * 20 11 10 38 38 H 1.08995 * 109.79170 * 170.98915 * 20 11 10 39 39 H 1.08998 * 109.49244 * 307.21480 * 21 8 7 40 40 H 1.09003 * 109.48963 * 67.28675 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7214 -1.2491 6 6 3.5648 -0.6133 -1.3135 7 6 4.0748 -1.3342 -2.5631 8 7 5.5389 -1.2310 -2.6246 9 6 5.9606 0.1626 -2.8198 10 6 7.4854 0.2532 -2.6975 11 7 8.0870 -0.7146 -3.6274 12 6 9.0615 -0.3299 -4.5091 13 1 9.1106 0.6949 -4.8463 14 6 9.9863 -1.2570 -4.9695 15 7 10.6494 -1.0279 -6.0832 16 14 10.2898 -2.8299 -4.0086 17 1 9.3964 -3.9012 -4.5178 18 1 11.7058 -3.2457 -4.1742 19 1 10.0084 -2.5931 -2.5698 20 6 7.6146 -2.1069 -3.5847 21 6 6.0847 -2.1045 -3.6720 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7210 -1.5952 1.2330 26 1 1.6055 -0.2618 -2.1369 27 1 1.7517 -1.7716 -1.2054 28 1 3.8532 0.4369 -1.3572 29 1 3.9994 -1.0729 -0.4258 30 1 3.7865 -2.3845 -2.5197 31 1 3.6403 -0.8744 -3.4506 32 1 5.6544 0.5000 -3.8100 33 1 5.4968 0.7926 -2.0608 34 1 7.7857 0.0157 -1.6769 35 1 7.8141 1.2604 -2.9540 36 1 11.2960 -1.6756 -6.4048 37 1 7.9272 -2.5711 -2.6494 38 1 8.0285 -2.6630 -4.4258 39 1 5.7108 -3.1186 -3.5312 40 1 5.7767 -1.7355 -4.6503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308839895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:45 Heat of formation + Delta-G solvation = -56.345935 kcal Electronic energy + Delta-G solvation = -18027.628564 eV Core-core repulsion = 15262.652484 eV Total energy + Delta-G solvation = -2764.976080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03274 -38.79587 -36.65370 -34.33685 -33.29593 -32.05250 -31.26175 -28.70902 -26.14745 -25.07925 -24.02435 -22.47252 -21.95860 -20.99594 -18.83932 -17.50970 -17.18268 -16.91792 -16.14377 -16.05011 -15.85872 -15.60138 -15.39469 -14.94446 -14.45293 -14.41850 -14.11863 -13.66550 -13.50291 -12.94650 -12.88741 -12.63869 -12.51537 -12.37831 -12.19379 -12.17111 -11.84124 -11.62377 -11.56595 -11.52703 -11.32853 -10.83406 -10.66696 -9.36121 -8.91608 -8.19094 -5.50815 1.28339 1.40654 1.50957 2.39983 2.87194 3.05510 3.33800 3.56628 3.82104 4.09147 4.10088 4.17858 4.20620 4.22728 4.40621 4.45441 4.50969 4.61108 4.64534 4.67967 4.69000 4.79045 4.83012 4.90577 4.96430 4.99624 5.06456 5.13195 5.26212 5.30065 5.42950 5.47765 5.80272 6.07423 6.12133 6.25022 6.87077 6.93495 7.58332 8.01462 9.00876 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053533 B = 0.004492 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.914802 B = 6231.696979 C = 6352.815139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 H 0.088 0.912 4 O -0.583 6.583 5 C -0.141 4.141 6 C -0.104 4.104 7 C 0.057 3.943 8 N -0.543 5.543 9 C 0.052 3.948 10 C 0.145 3.855 11 N -0.625 5.625 12 C -0.252 4.252 13 H 0.052 0.948 14 C -0.035 4.035 15 N -0.957 5.957 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.308 1.308 19 H -0.266 1.266 20 C 0.125 3.875 21 C 0.053 3.947 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.386 0.614 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.263 0.737 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 -1.710 11.600 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.106 0.894 4 O -0.391 6.391 5 C -0.179 4.179 6 C -0.142 4.142 7 C -0.070 4.070 8 N -0.268 5.268 9 C -0.077 4.077 10 C 0.020 3.980 11 N -0.350 5.350 12 C -0.381 4.381 13 H 0.070 0.930 14 C -0.230 4.230 15 N -0.604 5.604 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.237 1.237 19 H -0.191 1.191 20 C 0.000 4.000 21 C -0.077 4.077 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.236 0.764 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.116 0.884 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -21.133 -1.322 12.056 24.366 hybrid contribution 0.262 -0.761 -1.046 1.320 sum -20.871 -2.083 11.010 23.689 Atomic orbital electron populations 1.22452 0.95284 1.03179 1.02852 1.21934 0.93492 0.96314 0.84106 0.89441 1.86573 1.77760 1.30228 1.44522 1.22214 0.94846 1.01992 0.98864 1.21456 0.95508 1.00108 0.97164 1.22204 0.85835 1.01428 0.97563 1.61926 1.10704 1.07713 1.46417 1.22505 0.96210 0.89656 0.99369 1.21190 0.91747 0.92787 0.92244 1.44567 1.43038 1.06267 1.41106 1.18896 1.05592 0.96513 1.17136 0.92984 1.25889 0.97264 1.01905 0.97946 1.69966 1.30138 1.38611 1.21648 0.85875 0.75557 0.80470 0.80246 1.19650 1.23718 1.19094 1.21450 0.93815 0.86043 0.98730 1.22436 0.95079 0.97769 0.92374 0.91379 0.92264 0.90890 0.76448 0.90474 0.90472 0.92569 0.91759 0.90070 0.95316 0.96275 0.88435 0.94734 0.92116 0.92844 0.94826 0.92777 0.88817 0.95976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.53 71.98 0.69 -1.22 16 2 C 0.10 1.44 3.59 30.59 0.11 1.55 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 4 O -0.58 -10.06 12.88 -148.98 -1.92 -11.98 16 5 C -0.14 -1.99 4.89 30.59 0.15 -1.84 16 6 C -0.10 -2.11 5.04 30.59 0.15 -1.95 16 7 C 0.06 1.35 4.96 86.30 0.43 1.78 16 8 N -0.54 -17.30 4.63 -895.24 -4.15 -21.44 16 9 C 0.05 1.73 5.46 86.38 0.47 2.20 16 10 C 0.15 5.95 6.69 86.35 0.58 6.53 16 11 N -0.62 -30.98 2.82 -698.14 -1.97 -32.95 16 12 C -0.25 -14.83 10.08 84.03 0.85 -13.98 16 13 H 0.05 3.33 8.05 -2.91 -0.02 3.30 16 14 C -0.04 -2.12 5.24 84.86 0.44 -1.68 16 15 N -0.96 -61.34 13.97 21.65 0.30 -61.03 16 16 Si 0.95 47.87 24.31 68.60 1.67 49.54 16 17 H -0.27 -12.68 6.58 99.48 0.65 -12.02 16 18 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 19 H -0.27 -13.12 6.61 99.48 0.66 -12.47 16 20 C 0.12 5.54 4.35 86.35 0.38 5.92 16 21 C 0.05 1.88 5.62 86.38 0.49 2.37 16 22 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.39 3.88 9.05 -74.06 -0.67 3.21 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.20 6.40 -2.39 -0.02 1.18 16 29 H 0.06 1.48 7.82 -2.38 -0.02 1.46 16 30 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 31 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 2.71 6.16 -2.39 -0.01 2.69 16 34 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 2.47 7.95 -2.38 -0.02 2.45 16 36 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 37 H 0.03 1.49 6.94 -2.39 -0.02 1.48 16 38 H 0.05 2.60 4.61 -2.39 -0.01 2.59 16 39 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.91 307.01 -1.10 -71.01 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.23 Total: 7.19 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.73 Total: -0.33 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -5.81 Total: -115.43 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.92 Total: -11.98 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.67 Total: 49.54 kcal Total: -69.91 -1.10 -71.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308839895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.664 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds