Wall clock time and date at job start Mon Mar 30 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 C 1.50697 * 109.47104 * 239.99984 * 2 1 3 5 5 H 1.08004 * 120.00108 * 239.99441 * 4 2 1 6 6 C 1.37882 * 120.00278 * 60.00005 * 4 2 1 7 7 N 1.31520 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47218 * 60.00061 * 8 6 4 10 10 H 1.48504 * 109.46876 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47363 * 299.99625 * 8 6 4 12 12 N 1.46903 * 109.47147 * 119.99766 * 2 1 3 13 13 C 1.46896 * 110.99908 * 275.00225 * 12 2 1 14 14 H 1.09002 * 109.47220 * 35.00039 * 13 12 2 15 15 C 1.53000 * 109.47053 * 274.99684 * 13 12 2 16 16 C 1.52997 * 109.46848 * 154.99970 * 13 12 2 17 17 H 1.08996 * 109.50887 * 304.91628 * 16 13 12 18 18 C 1.53100 * 109.50691 * 184.77931 * 16 13 12 19 19 N 1.47019 * 109.25677 * 183.21637 * 18 16 13 20 20 C 1.46901 * 110.99412 * 182.39552 * 19 18 16 21 21 C 1.47011 * 110.75101 * 58.62284 * 19 18 16 22 22 C 1.53102 * 109.25640 * 301.37858 * 21 19 18 23 23 O 1.43018 * 109.25817 * 56.85142 * 22 21 19 24 24 H 1.09000 * 109.47197 * 300.00038 * 1 2 3 25 25 H 1.08999 * 109.47517 * 60.00313 * 1 2 3 26 26 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99192 * 180.02562 * 7 6 4 28 28 H 1.00895 * 110.99553 * 38.95509 * 12 2 1 29 29 H 1.08992 * 109.47399 * 300.00238 * 15 13 12 30 30 H 1.09004 * 109.46724 * 60.00724 * 15 13 12 31 31 H 1.09001 * 109.47194 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.50675 * 303.15635 * 18 16 13 33 33 H 1.09004 * 109.50184 * 63.28527 * 18 16 13 34 34 H 1.09005 * 109.47141 * 292.40764 * 20 19 18 35 35 H 1.08993 * 109.47793 * 52.41452 * 20 19 18 36 36 H 1.09003 * 109.46964 * 172.41377 * 20 19 18 37 37 H 1.09006 * 109.50345 * 181.44620 * 21 19 18 38 38 H 1.08997 * 109.51014 * 61.31386 * 21 19 18 39 39 H 1.09004 * 109.50086 * 296.91737 * 22 21 19 40 40 H 1.08993 * 109.50517 * 176.78744 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2575 0.9330 2.2906 15 6 3.4111 0.9809 2.3224 16 6 1.9770 -0.5796 3.6453 17 1 1.0725 -1.1876 3.6252 18 6 1.9222 0.3806 4.8366 19 7 1.8988 -0.3960 6.0847 20 6 1.7889 0.4881 7.2527 21 6 3.0866 -1.2565 6.1851 22 6 3.1297 -2.2003 4.9804 23 8 3.1203 -1.4288 3.7762 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1608 -3.4844 28 1 1.4496 -1.4978 1.4100 29 1 4.2359 0.2707 2.3786 30 1 3.4861 1.5525 1.3973 31 1 3.4578 1.6596 3.1740 32 1 2.8012 1.0250 4.8252 33 1 1.0216 0.9911 4.7708 34 1 2.7045 1.0707 7.3549 35 1 0.9424 1.1618 7.1201 36 1 1.6383 -0.1123 8.1499 37 1 3.0359 -1.8410 7.1038 38 1 3.9842 -0.6382 6.1954 39 1 2.2585 -2.8553 4.9999 40 1 4.0383 -2.8008 5.0209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308891380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:45 Heat of formation + Delta-G solvation = -38.293895 kcal Electronic energy + Delta-G solvation = -18504.539118 eV Core-core repulsion = 15740.345834 eV Total energy + Delta-G solvation = -2764.193285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71151 -36.56976 -35.41960 -33.32740 -31.29410 -29.44485 -28.31068 -26.92772 -25.10724 -24.37807 -24.03308 -21.13305 -19.93951 -19.50593 -16.55649 -16.28560 -15.89800 -15.34470 -15.06262 -14.83142 -14.61476 -14.00018 -13.75759 -13.28653 -12.78123 -12.48325 -12.43915 -12.05473 -11.88636 -11.64008 -11.55927 -11.27429 -11.11209 -10.83985 -10.81605 -10.59538 -10.36847 -10.16805 -10.01243 -9.66194 -9.40125 -8.91082 -8.49614 -8.28743 -7.10931 -5.91686 -3.93936 3.39751 3.42910 3.47112 3.70939 3.96849 4.49747 4.78350 4.91322 4.94258 5.15698 5.21949 5.31573 5.35481 5.39875 5.42172 5.53182 5.63030 5.64682 5.72506 5.79001 5.87964 6.06002 6.21660 6.43504 6.62496 6.74134 6.80558 6.81501 6.88908 6.99901 7.17112 7.39856 7.49921 7.80583 7.97870 8.36640 8.64839 8.72092 9.13707 9.71028 11.15512 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045501 B = 0.005112 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.221720 B = 5476.003018 C = 5734.707813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.278 1.278 12 N -0.671 5.671 13 C 0.094 3.906 14 H 0.046 0.954 15 C -0.131 4.131 16 C 0.097 3.903 17 H 0.061 0.939 18 C 0.022 3.978 19 N -0.544 5.544 20 C 0.025 3.975 21 C 0.017 3.983 22 C 0.060 3.940 23 O -0.357 6.357 24 H 0.003 0.997 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -1.228 17.506 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.017 4.017 14 H 0.064 0.936 15 C -0.189 4.189 16 C 0.039 3.961 17 H 0.079 0.921 18 C -0.106 4.106 19 N -0.269 5.269 20 C -0.123 4.123 21 C -0.111 4.111 22 C -0.017 4.017 23 O -0.275 6.275 24 H 0.022 0.978 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.056 -1.336 17.039 17.215 hybrid contribution -0.267 0.273 -0.307 0.490 sum 1.788 -1.063 16.732 16.861 Atomic orbital electron populations 1.22454 1.00942 0.99150 1.00363 1.19224 0.89333 0.94493 0.86682 0.94781 1.21137 1.29916 1.12326 0.89581 0.91983 1.24948 0.95431 0.95243 0.98985 1.69880 1.37500 1.23317 1.23302 0.86574 0.79184 0.79593 0.82083 1.20425 1.21560 1.20324 1.60788 1.58175 1.08409 1.02743 1.21441 0.97598 0.93905 0.88731 0.93617 1.21711 0.97873 0.99161 1.00188 1.22377 0.88968 0.90904 0.93881 0.92145 1.22910 1.02004 0.96099 0.89634 1.62207 1.39557 1.22580 1.02521 1.22370 1.00601 0.96146 0.93187 1.22826 0.91483 0.96680 1.00087 1.22612 1.02222 0.92961 0.83933 1.88175 1.43504 1.57051 1.38752 0.97770 0.89293 0.95373 0.93135 0.85734 0.91602 0.92434 0.94305 0.93275 0.89890 0.95606 0.91287 0.91375 0.90096 0.94049 0.92675 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.92 37.16 0.33 -3.80 16 2 C 0.21 5.36 2.38 -68.87 -0.16 5.20 16 3 H 0.03 0.95 7.11 -51.93 -0.37 0.58 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.67 -14.71 5.99 -100.96 -0.60 -15.31 16 13 C 0.09 1.73 2.30 -67.72 -0.16 1.57 16 14 H 0.05 0.86 7.11 -51.93 -0.37 0.49 16 15 C -0.13 -2.36 8.96 37.16 0.33 -2.02 16 16 C 0.10 1.53 2.44 -26.68 -0.07 1.46 16 17 H 0.06 0.97 8.03 -51.93 -0.42 0.56 16 18 C 0.02 0.29 4.76 -3.71 -0.02 0.27 16 19 N -0.54 -6.53 4.99 -242.59 -1.21 -7.74 16 20 C 0.03 0.24 9.63 60.07 0.58 0.82 16 21 C 0.02 0.19 5.66 -3.71 -0.02 0.17 16 22 C 0.06 0.74 7.01 37.21 0.26 1.00 16 23 O -0.36 -5.79 9.54 -35.23 -0.34 -6.12 16 24 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.33 6.93 8.02 -39.29 -0.32 6.61 16 29 H 0.06 1.24 7.56 -51.93 -0.39 0.85 16 30 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.04 0.59 6.49 -51.93 -0.34 0.25 16 32 H 0.05 0.67 6.42 -51.93 -0.33 0.33 16 33 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -29.65 309.86 -8.16 -37.81 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.96 Total: 3.30 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 0.68 Total: -8.05 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.19 Total: -48.49 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.34 Total: -6.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.65 -8.16 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308891380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.484 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds