Wall clock time and date at job start Mon Mar 30 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 C 1.50697 * 109.47104 * 239.99984 * 2 1 3 5 5 H 1.08004 * 120.00108 * 239.99441 * 4 2 1 6 6 C 1.37882 * 120.00278 * 60.00005 * 4 2 1 7 7 N 1.31520 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47218 * 60.00061 * 8 6 4 10 10 H 1.48504 * 109.46876 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47363 * 299.99625 * 8 6 4 12 12 N 1.46903 * 109.47147 * 119.99766 * 2 1 3 13 13 C 1.46896 * 110.99908 * 275.00225 * 12 2 1 14 14 H 1.09002 * 109.47220 * 35.00039 * 13 12 2 15 15 C 1.53000 * 109.47053 * 274.99684 * 13 12 2 16 16 C 1.52997 * 109.46848 * 154.99970 * 13 12 2 17 17 H 1.08996 * 109.50887 * 304.91628 * 16 13 12 18 18 C 1.53100 * 109.50691 * 184.77931 * 16 13 12 19 19 N 1.47019 * 109.25677 * 183.21637 * 18 16 13 20 20 C 1.46901 * 110.99412 * 182.39552 * 19 18 16 21 21 C 1.47011 * 110.75101 * 58.62284 * 19 18 16 22 22 C 1.53102 * 109.25640 * 301.37858 * 21 19 18 23 23 O 1.43018 * 109.25817 * 56.85142 * 22 21 19 24 24 H 1.09000 * 109.47197 * 300.00038 * 1 2 3 25 25 H 1.08999 * 109.47517 * 60.00313 * 1 2 3 26 26 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99192 * 180.02562 * 7 6 4 28 28 H 1.00895 * 110.99553 * 38.95509 * 12 2 1 29 29 H 1.08992 * 109.47399 * 300.00238 * 15 13 12 30 30 H 1.09004 * 109.46724 * 60.00724 * 15 13 12 31 31 H 1.09001 * 109.47194 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.50675 * 303.15635 * 18 16 13 33 33 H 1.09004 * 109.50184 * 63.28527 * 18 16 13 34 34 H 1.09005 * 109.47141 * 292.40764 * 20 19 18 35 35 H 1.08993 * 109.47793 * 52.41452 * 20 19 18 36 36 H 1.09003 * 109.46964 * 172.41377 * 20 19 18 37 37 H 1.09006 * 109.50345 * 181.44620 * 21 19 18 38 38 H 1.08997 * 109.51014 * 61.31386 * 21 19 18 39 39 H 1.09004 * 109.50086 * 296.91737 * 22 21 19 40 40 H 1.08993 * 109.50517 * 176.78744 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2575 0.9330 2.2906 15 6 3.4111 0.9809 2.3224 16 6 1.9770 -0.5796 3.6453 17 1 1.0725 -1.1876 3.6252 18 6 1.9222 0.3806 4.8366 19 7 1.8988 -0.3960 6.0847 20 6 1.7889 0.4881 7.2527 21 6 3.0866 -1.2565 6.1851 22 6 3.1297 -2.2003 4.9804 23 8 3.1203 -1.4288 3.7762 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1608 -3.4844 28 1 1.4496 -1.4978 1.4100 29 1 4.2359 0.2707 2.3786 30 1 3.4861 1.5525 1.3973 31 1 3.4578 1.6596 3.1740 32 1 2.8012 1.0250 4.8252 33 1 1.0216 0.9911 4.7708 34 1 2.7045 1.0707 7.3549 35 1 0.9424 1.1618 7.1201 36 1 1.6383 -0.1123 8.1499 37 1 3.0359 -1.8410 7.1038 38 1 3.9842 -0.6382 6.1954 39 1 2.2585 -2.8553 4.9999 40 1 4.0383 -2.8008 5.0209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308891380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:45 Heat of formation + Delta-G solvation = -60.183704 kcal Electronic energy + Delta-G solvation = -18505.488332 eV Core-core repulsion = 15740.345834 eV Total energy + Delta-G solvation = -2765.142498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82597 -38.14658 -36.54269 -35.13328 -33.01979 -30.67563 -29.43869 -28.62307 -27.21729 -25.56178 -25.01111 -22.57358 -21.49146 -20.91417 -18.44084 -17.47630 -17.16768 -16.70830 -16.54514 -16.04025 -15.83118 -15.45460 -15.05041 -14.64241 -14.53735 -13.95289 -13.55606 -13.32841 -13.29299 -12.98880 -12.98217 -12.81378 -12.72725 -12.56546 -12.30753 -12.18400 -12.09999 -11.88946 -11.64774 -11.22274 -10.99499 -10.51941 -10.45046 -9.39887 -8.89565 -8.06939 -6.17260 1.44210 1.46152 1.53899 2.46067 2.77877 2.88068 3.21234 3.54364 3.90568 3.98587 4.02857 4.06721 4.22209 4.34809 4.48307 4.52057 4.61134 4.64336 4.67683 4.73476 4.81886 4.85568 4.90843 4.97019 4.98805 5.00921 5.07410 5.19800 5.44765 5.50931 5.72199 5.85887 5.89789 5.98565 6.29606 6.35531 6.70961 6.88264 6.98159 7.52440 8.98459 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045501 B = 0.005112 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.221720 B = 5476.003018 C = 5734.707813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.677 5.677 13 C 0.092 3.908 14 H 0.043 0.957 15 C -0.122 4.122 16 C 0.106 3.894 17 H 0.055 0.945 18 C 0.029 3.971 19 N -0.554 5.554 20 C 0.025 3.975 21 C 0.021 3.979 22 C 0.054 3.946 23 O -0.384 6.384 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -1.779 18.977 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.307 5.307 13 C -0.018 4.018 14 H 0.061 0.939 15 C -0.180 4.180 16 C 0.048 3.952 17 H 0.073 0.927 18 C -0.100 4.100 19 N -0.279 5.279 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.023 4.023 23 O -0.303 6.303 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.206 -1.892 18.538 18.765 hybrid contribution -0.292 0.432 -0.691 0.866 sum 1.914 -1.459 17.848 18.009 Atomic orbital electron populations 1.22254 1.00103 0.99167 1.00082 1.18962 0.89833 0.92787 0.87561 0.97781 1.21420 1.30254 1.12359 0.91176 0.93069 1.25696 0.95517 0.95905 1.01777 1.70004 1.38089 1.24278 1.23949 0.85593 0.78580 0.78703 0.78591 1.19709 1.20886 1.20079 1.60658 1.57913 1.08990 1.03133 1.21489 0.97580 0.93732 0.89005 0.93897 1.21618 0.97259 0.99006 1.00112 1.22141 0.88726 0.91048 0.93307 0.92672 1.22760 1.02218 0.95444 0.89531 1.62220 1.40070 1.23037 1.02623 1.22441 1.01008 0.96214 0.92617 1.22834 0.91057 0.96457 1.00357 1.22849 1.03166 0.93077 0.83183 1.88125 1.43543 1.57647 1.40944 0.95551 0.91937 0.95069 0.93054 0.85413 0.92700 0.95001 0.91349 0.93536 0.89208 0.95240 0.90798 0.89759 0.87632 0.94292 0.92629 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.92 71.98 0.64 -7.04 16 2 C 0.22 11.29 2.38 44.17 0.11 11.40 16 3 H 0.00 0.25 7.11 -2.39 -0.02 0.23 16 4 C -0.51 -29.44 8.84 25.60 0.23 -29.22 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.68 -29.99 5.99 -473.32 -2.83 -32.83 16 13 C 0.09 3.38 2.30 44.92 0.10 3.49 16 14 H 0.04 1.60 7.11 -2.39 -0.02 1.59 16 15 C -0.12 -4.38 8.96 71.98 0.64 -3.74 16 16 C 0.11 3.23 2.44 30.63 0.07 3.31 16 17 H 0.06 1.73 8.03 -2.39 -0.02 1.71 16 18 C 0.03 0.72 4.76 86.31 0.41 1.13 16 19 N -0.55 -11.88 4.99 -921.41 -4.59 -16.48 16 20 C 0.02 0.39 9.63 127.69 1.23 1.62 16 21 C 0.02 0.40 5.66 86.32 0.49 0.89 16 22 C 0.05 1.23 7.01 72.02 0.50 1.74 16 23 O -0.38 -12.07 9.54 -148.98 -1.42 -13.49 16 24 H 0.03 1.13 7.43 -2.39 -0.02 1.11 16 25 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 26 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.33 14.04 8.02 -89.70 -0.72 13.32 16 29 H 0.05 2.07 7.56 -2.39 -0.02 2.05 16 30 H 0.03 1.27 7.43 -2.39 -0.02 1.25 16 31 H 0.07 2.01 6.49 -2.39 -0.02 1.99 16 32 H 0.05 1.17 6.42 -2.39 -0.02 1.15 16 33 H 0.09 2.08 8.11 -2.39 -0.02 2.06 16 34 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.36 309.86 -1.42 -64.78 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.28 Total: 20.24 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.88 Total: -15.46 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -7.19 Total: -103.16 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.42 Total: -13.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.36 -1.42 -64.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308891380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.593 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds