Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47156 * 2 1 4 4 C 1.50702 * 109.46954 * 239.99989 * 2 1 3 5 5 H 1.08002 * 120.00479 * 245.58525 * 4 2 1 6 6 C 1.37878 * 119.99751 * 65.59054 * 4 2 1 7 7 N 1.31510 * 120.00190 * 6.27194 * 6 4 2 8 8 Si 1.86797 * 120.00021 * 186.26715 * 6 4 2 9 9 H 1.48504 * 109.46890 * 94.98258 * 8 6 4 10 10 H 1.48498 * 109.47480 * 214.98044 * 8 6 4 11 11 H 1.48501 * 109.47174 * 334.98654 * 8 6 4 12 12 N 1.46902 * 109.47011 * 120.00533 * 2 1 3 13 13 C 1.46900 * 110.99559 * 273.89311 * 12 2 1 14 14 H 1.08997 * 109.47489 * 347.23329 * 13 12 2 15 15 C 1.52996 * 109.47215 * 107.23965 * 13 12 2 16 16 C 1.53006 * 109.46790 * 227.23843 * 13 12 2 17 17 H 1.09006 * 109.50294 * 180.02562 * 16 13 12 18 18 C 1.53091 * 109.50549 * 59.91466 * 16 13 12 19 19 N 1.47026 * 109.25481 * 183.25919 * 18 16 13 20 20 C 1.46896 * 111.00223 * 182.34994 * 19 18 16 21 21 C 1.47012 * 110.78649 * 58.54764 * 19 18 16 22 22 C 1.53095 * 109.26142 * 301.40838 * 21 19 18 23 23 O 1.43014 * 109.50419 * 300.08390 * 16 13 12 24 24 H 1.09002 * 109.47251 * 183.52270 * 1 2 3 25 25 H 1.09003 * 109.47310 * 303.52082 * 1 2 3 26 26 H 1.08997 * 109.47248 * 63.52873 * 1 2 3 27 27 H 0.97001 * 120.00173 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00082 * 149.93948 * 12 2 1 29 29 H 1.08999 * 109.47245 * 174.84539 * 15 13 12 30 30 H 1.09002 * 109.47455 * 54.84207 * 15 13 12 31 31 H 1.08995 * 109.47090 * 294.84385 * 15 13 12 32 32 H 1.09000 * 109.50622 * 303.14790 * 18 16 13 33 33 H 1.09001 * 109.51118 * 63.28784 * 18 16 13 34 34 H 1.08998 * 109.46681 * 300.27602 * 20 19 18 35 35 H 1.09003 * 109.47019 * 60.26923 * 20 19 18 36 36 H 1.08998 * 109.47149 * 180.27360 * 20 19 18 37 37 H 1.09007 * 109.50970 * 181.47432 * 21 19 18 38 38 H 1.09002 * 109.51035 * 61.34590 * 21 19 18 39 39 H 1.09003 * 109.51158 * 296.91471 * 22 21 19 40 40 H 1.08997 * 109.54652 * 176.80510 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5768 -1.6381 -1.1341 6 6 1.7968 -0.1759 -2.4795 7 7 1.2440 1.0119 -2.5928 8 14 2.2631 -1.1390 -4.0106 9 1 1.0812 -1.8933 -4.4999 10 1 2.7225 -0.2001 -5.0653 11 1 3.3562 -2.0896 -3.6837 12 7 2.0197 -0.6926 1.1994 13 6 2.1073 0.2286 2.3403 14 1 2.0077 1.2550 1.9871 15 6 0.9847 -0.0804 3.3327 16 6 3.4612 0.0565 3.0319 17 1 3.5267 0.7395 3.8789 18 6 4.5852 0.3634 2.0388 19 7 5.8832 0.1210 2.6855 20 6 6.9921 0.4575 1.7828 21 6 5.9838 -1.2710 3.1477 22 6 4.8458 -1.5605 4.1299 23 8 3.5935 -1.2905 3.4939 24 1 -0.3634 -1.0257 0.0631 25 1 -0.3634 0.5675 0.8568 26 1 -0.3633 0.4581 -0.9199 27 1 1.0780 1.3878 -3.4715 28 1 2.9088 -1.1358 1.0233 29 1 1.1036 0.5405 4.2207 30 1 1.0294 -1.1320 3.6161 31 1 0.0213 0.1301 2.8686 32 1 4.4872 -0.2833 1.1669 33 1 4.5218 1.4064 1.7283 34 1 6.9260 -0.1536 0.8826 35 1 6.9327 1.5115 1.5115 36 1 7.9403 0.2642 2.2844 37 1 6.9417 -1.4207 3.6461 38 1 5.9080 -1.9444 2.2939 39 1 4.9524 -0.9242 5.0085 40 1 4.8823 -2.6071 4.4320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308891384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -40.474953 kcal Electronic energy + Delta-G solvation = -18863.593959 eV Core-core repulsion = 16099.306097 eV Total energy + Delta-G solvation = -2764.287862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66843 -36.41632 -35.38308 -33.24733 -31.01297 -29.53312 -28.44530 -27.26433 -25.00036 -24.19705 -23.81143 -20.73931 -20.24528 -19.42323 -16.70072 -16.15672 -15.86469 -15.23537 -15.02158 -14.71491 -14.49619 -13.82833 -13.58632 -13.39418 -13.01213 -12.42457 -12.31217 -11.99439 -11.71180 -11.60642 -11.37541 -11.28681 -11.04666 -10.86097 -10.78360 -10.55133 -10.38754 -10.14695 -10.10439 -9.67871 -9.38440 -8.79762 -8.45035 -8.32833 -7.16320 -6.04417 -4.07531 3.29008 3.36093 3.39046 3.86744 3.99761 4.40936 4.92125 5.05074 5.09754 5.24143 5.28744 5.33014 5.42750 5.48544 5.54552 5.57407 5.73544 5.81110 5.87487 5.92236 6.09419 6.11186 6.23756 6.46782 6.55574 6.88530 6.91562 6.97640 6.98346 7.17927 7.26067 7.40872 7.53036 7.80712 7.90910 8.22773 8.45997 8.74957 9.06246 9.58109 11.04225 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.007560 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.596762 B = 3702.855932 C = 4476.602773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.210 3.790 3 H 0.007 0.993 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.092 3.908 14 H 0.061 0.939 15 C -0.129 4.129 16 C 0.088 3.912 17 H 0.061 0.939 18 C 0.018 3.982 19 N -0.543 5.543 20 C 0.024 3.976 21 C 0.015 3.985 22 C 0.063 3.937 23 O -0.363 6.363 24 H 0.033 0.967 25 H 0.009 0.991 26 H 0.063 0.937 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -1.165 11.368 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.024 0.976 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.311 5.311 13 C -0.019 4.019 14 H 0.079 0.921 15 C -0.187 4.187 16 C 0.029 3.971 17 H 0.079 0.921 18 C -0.110 4.110 19 N -0.268 5.268 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.014 4.014 23 O -0.282 6.282 24 H 0.052 0.948 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.259 -1.100 11.776 13.878 hybrid contribution 1.256 -0.224 -1.930 2.313 sum 8.515 -1.324 9.846 13.085 Atomic orbital electron populations 1.21672 0.98302 0.98802 0.98947 1.19232 0.92295 0.92472 0.85811 0.97558 1.21271 1.35658 1.07996 0.90774 0.92418 1.24910 0.95280 0.94697 0.98960 1.69954 1.43775 1.15397 1.23656 0.86591 0.78721 0.79855 0.82870 1.20617 1.21363 1.19984 1.60673 1.33401 1.31351 1.05712 1.21663 0.91096 0.96244 0.92892 0.92125 1.21722 0.98314 1.01774 0.96916 1.22596 0.94981 0.83952 0.95571 0.92060 1.22902 0.88610 1.02624 0.96908 1.62247 1.02896 1.22070 1.39540 1.22365 0.93685 1.01479 0.94860 1.22809 0.99966 0.89289 0.99235 1.22588 0.83520 1.01041 0.94270 1.88108 1.34459 1.28771 1.76835 0.94811 0.97168 0.91846 0.92983 0.84522 0.94218 0.91923 0.92662 0.92506 0.89782 0.95197 0.91215 0.91593 0.90190 0.93747 0.92908 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.29 37.16 0.35 -2.60 16 2 C 0.21 5.30 2.41 -68.86 -0.17 5.13 16 3 H 0.01 0.19 7.31 -51.93 -0.38 -0.19 16 4 C -0.52 -14.28 8.49 -34.44 -0.29 -14.57 16 5 H 0.06 1.60 7.66 -52.49 -0.40 1.19 16 6 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 7 N -0.89 -25.55 12.01 55.43 0.67 -24.89 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.77 6.02 -100.95 -0.61 -15.37 16 13 C 0.09 1.70 2.52 -67.71 -0.17 1.53 16 14 H 0.06 1.18 7.15 -51.93 -0.37 0.81 16 15 C -0.13 -2.18 9.30 37.16 0.35 -1.84 16 16 C 0.09 1.42 2.46 -26.68 -0.07 1.36 16 17 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 18 C 0.02 0.29 4.80 -3.71 -0.02 0.27 16 19 N -0.54 -7.60 4.98 -242.59 -1.21 -8.81 16 20 C 0.02 0.30 9.61 60.06 0.58 0.88 16 21 C 0.02 0.19 5.66 -3.71 -0.02 0.17 16 22 C 0.06 0.80 7.01 37.21 0.26 1.06 16 23 O -0.36 -5.92 9.59 -35.23 -0.34 -6.25 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.01 0.21 6.99 -51.93 -0.36 -0.15 16 26 H 0.06 1.70 6.71 -51.93 -0.35 1.35 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.33 7.42 5.65 -39.29 -0.22 7.20 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 31 H 0.05 0.97 6.99 -51.93 -0.36 0.61 16 32 H 0.06 1.07 6.39 -51.93 -0.33 0.73 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -28.93 310.81 -8.10 -37.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.97 Total: 4.14 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.70 Total: -6.95 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -1.15 Total: -49.07 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.34 Total: -6.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.93 -8.10 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308891384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.447 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds