Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47156 * 2 1 4 4 C 1.50702 * 109.46954 * 239.99989 * 2 1 3 5 5 H 1.08002 * 120.00479 * 245.58525 * 4 2 1 6 6 C 1.37878 * 119.99751 * 65.59054 * 4 2 1 7 7 N 1.31510 * 120.00190 * 6.27194 * 6 4 2 8 8 Si 1.86797 * 120.00021 * 186.26715 * 6 4 2 9 9 H 1.48504 * 109.46890 * 94.98258 * 8 6 4 10 10 H 1.48498 * 109.47480 * 214.98044 * 8 6 4 11 11 H 1.48501 * 109.47174 * 334.98654 * 8 6 4 12 12 N 1.46902 * 109.47011 * 120.00533 * 2 1 3 13 13 C 1.46900 * 110.99559 * 273.89311 * 12 2 1 14 14 H 1.08997 * 109.47489 * 347.23329 * 13 12 2 15 15 C 1.52996 * 109.47215 * 107.23965 * 13 12 2 16 16 C 1.53006 * 109.46790 * 227.23843 * 13 12 2 17 17 H 1.09006 * 109.50294 * 180.02562 * 16 13 12 18 18 C 1.53091 * 109.50549 * 59.91466 * 16 13 12 19 19 N 1.47026 * 109.25481 * 183.25919 * 18 16 13 20 20 C 1.46896 * 111.00223 * 182.34994 * 19 18 16 21 21 C 1.47012 * 110.78649 * 58.54764 * 19 18 16 22 22 C 1.53095 * 109.26142 * 301.40838 * 21 19 18 23 23 O 1.43014 * 109.50419 * 300.08390 * 16 13 12 24 24 H 1.09002 * 109.47251 * 183.52270 * 1 2 3 25 25 H 1.09003 * 109.47310 * 303.52082 * 1 2 3 26 26 H 1.08997 * 109.47248 * 63.52873 * 1 2 3 27 27 H 0.97001 * 120.00173 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00082 * 149.93948 * 12 2 1 29 29 H 1.08999 * 109.47245 * 174.84539 * 15 13 12 30 30 H 1.09002 * 109.47455 * 54.84207 * 15 13 12 31 31 H 1.08995 * 109.47090 * 294.84385 * 15 13 12 32 32 H 1.09000 * 109.50622 * 303.14790 * 18 16 13 33 33 H 1.09001 * 109.51118 * 63.28784 * 18 16 13 34 34 H 1.08998 * 109.46681 * 300.27602 * 20 19 18 35 35 H 1.09003 * 109.47019 * 60.26923 * 20 19 18 36 36 H 1.08998 * 109.47149 * 180.27360 * 20 19 18 37 37 H 1.09007 * 109.50970 * 181.47432 * 21 19 18 38 38 H 1.09002 * 109.51035 * 61.34590 * 21 19 18 39 39 H 1.09003 * 109.51158 * 296.91471 * 22 21 19 40 40 H 1.08997 * 109.54652 * 176.80510 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5768 -1.6381 -1.1341 6 6 1.7968 -0.1759 -2.4795 7 7 1.2440 1.0119 -2.5928 8 14 2.2631 -1.1390 -4.0106 9 1 1.0812 -1.8933 -4.4999 10 1 2.7225 -0.2001 -5.0653 11 1 3.3562 -2.0896 -3.6837 12 7 2.0197 -0.6926 1.1994 13 6 2.1073 0.2286 2.3403 14 1 2.0077 1.2550 1.9871 15 6 0.9847 -0.0804 3.3327 16 6 3.4612 0.0565 3.0319 17 1 3.5267 0.7395 3.8789 18 6 4.5852 0.3634 2.0388 19 7 5.8832 0.1210 2.6855 20 6 6.9921 0.4575 1.7828 21 6 5.9838 -1.2710 3.1477 22 6 4.8458 -1.5605 4.1299 23 8 3.5935 -1.2905 3.4939 24 1 -0.3634 -1.0257 0.0631 25 1 -0.3634 0.5675 0.8568 26 1 -0.3633 0.4581 -0.9199 27 1 1.0780 1.3878 -3.4715 28 1 2.9088 -1.1358 1.0233 29 1 1.1036 0.5405 4.2207 30 1 1.0294 -1.1320 3.6161 31 1 0.0213 0.1301 2.8686 32 1 4.4872 -0.2833 1.1669 33 1 4.5218 1.4064 1.7283 34 1 6.9260 -0.1536 0.8826 35 1 6.9327 1.5115 1.5115 36 1 7.9403 0.2642 2.2844 37 1 6.9417 -1.4207 3.6461 38 1 5.9080 -1.9444 2.2939 39 1 4.9524 -0.9242 5.0085 40 1 4.8823 -2.6071 4.4320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308891384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -61.493901 kcal Electronic energy + Delta-G solvation = -18864.505409 eV Core-core repulsion = 16099.306097 eV Total energy + Delta-G solvation = -2765.199312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89796 -38.01224 -36.61718 -35.10479 -32.76775 -30.84343 -29.62435 -29.03322 -27.13303 -25.35387 -24.95613 -22.28114 -21.84446 -20.89310 -18.60748 -17.45650 -17.17359 -16.89129 -16.27352 -16.17961 -15.80979 -15.23437 -15.06825 -14.96591 -14.62559 -14.04790 -13.40404 -13.39321 -13.20733 -13.07161 -12.94398 -12.82407 -12.69821 -12.44639 -12.38865 -12.28313 -12.09328 -11.93595 -11.61051 -11.32130 -10.83795 -10.58331 -10.53816 -9.50272 -8.95872 -8.17697 -6.28034 1.37451 1.39719 1.49135 2.38955 2.74228 2.83768 3.13464 3.66710 3.76804 3.88909 4.01118 4.10149 4.21782 4.35036 4.49557 4.50461 4.59233 4.63119 4.70293 4.80949 4.86351 4.90773 4.91562 4.97004 5.00799 5.05710 5.21557 5.23763 5.40131 5.57075 5.69038 5.81605 5.86082 5.92946 6.17176 6.26981 6.50963 6.83609 7.02570 7.42068 8.90578 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.007560 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.596762 B = 3702.855932 C = 4476.602773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.217 3.783 3 H -0.024 1.024 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.675 5.675 13 C 0.087 3.913 14 H 0.048 0.952 15 C -0.120 4.120 16 C 0.099 3.901 17 H 0.079 0.921 18 C 0.024 3.976 19 N -0.542 5.542 20 C 0.023 3.977 21 C 0.015 3.985 22 C 0.059 3.941 23 O -0.384 6.384 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -1.824 12.571 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 H -0.007 1.007 4 C -0.574 4.574 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.024 4.024 14 H 0.066 0.934 15 C -0.178 4.178 16 C 0.040 3.960 17 H 0.097 0.903 18 C -0.105 4.105 19 N -0.267 5.267 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.018 4.018 23 O -0.303 6.303 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.352 -1.766 13.001 15.553 hybrid contribution 0.967 -0.015 -2.236 2.436 sum 9.320 -1.781 10.765 14.350 Atomic orbital electron populations 1.21502 0.97942 0.98599 0.98477 1.19008 0.92466 0.90827 0.86802 1.00655 1.21539 1.35876 1.07933 0.92073 0.93074 1.25666 0.95221 0.95508 1.01837 1.70063 1.44519 1.16605 1.24410 0.85593 0.78547 0.78581 0.79208 1.20129 1.20742 1.19464 1.60641 1.33195 1.31729 1.05249 1.21742 0.93597 0.94814 0.92222 0.93391 1.21633 0.96893 1.01979 0.97324 1.22371 0.93245 0.84715 0.95661 0.90345 1.22738 0.90412 1.01289 0.96017 1.62310 1.02036 1.23105 1.39216 1.22447 0.94266 1.01291 0.94496 1.22916 1.01604 0.87946 0.98877 1.22858 0.81902 1.02755 0.94283 1.88069 1.36561 1.28397 1.77268 0.94994 0.95307 0.94261 0.92823 0.84997 0.91334 0.92443 0.93711 0.95766 0.90640 0.96494 0.91162 0.88873 0.87140 0.95350 0.91478 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.38 9.29 71.98 0.67 -4.71 16 2 C 0.22 11.29 2.41 44.17 0.11 11.40 16 3 H -0.02 -1.38 7.31 -2.39 -0.02 -1.40 16 4 C -0.54 -30.12 8.49 25.60 0.22 -29.91 16 5 H 0.05 2.88 7.66 -2.91 -0.02 2.86 16 6 C 0.02 0.97 5.23 84.66 0.44 1.41 16 7 N -0.92 -53.58 12.01 21.45 0.26 -53.33 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.68 -29.89 6.02 -473.31 -2.85 -32.74 16 13 C 0.09 3.20 2.52 44.92 0.11 3.31 16 14 H 0.05 1.89 7.15 -2.39 -0.02 1.88 16 15 C -0.12 -3.91 9.30 71.98 0.67 -3.24 16 16 C 0.10 3.11 2.46 30.63 0.08 3.19 16 17 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 18 C 0.02 0.79 4.80 86.31 0.41 1.20 16 19 N -0.54 -14.40 4.98 -921.43 -4.59 -18.99 16 20 C 0.02 0.53 9.61 127.69 1.23 1.76 16 21 C 0.01 0.33 5.66 86.31 0.49 0.82 16 22 C 0.06 1.33 7.01 72.01 0.50 1.83 16 23 O -0.38 -11.91 9.59 -148.98 -1.43 -13.34 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.29 6.99 -2.39 -0.02 1.27 16 26 H 0.04 2.14 6.71 -2.39 -0.02 2.12 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 28 H 0.33 15.04 5.65 -89.69 -0.51 14.53 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.93 7.84 -2.39 -0.02 1.91 16 31 H 0.04 1.52 6.99 -2.39 -0.02 1.51 16 32 H 0.02 0.94 6.39 -2.39 -0.02 0.93 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.11 310.81 -1.17 -63.27 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.49 Total: 21.78 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.93 Total: -12.94 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -7.18 Total: -105.06 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.43 Total: -13.34 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.11 -1.17 -63.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308891384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.779 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds