Wall clock time and date at job start Mon Mar 30 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47703 * 2 1 4 4 O 1.42902 * 109.47078 * 239.99387 * 2 1 3 5 5 C 1.53005 * 109.46810 * 120.00122 * 2 1 3 6 6 N 1.46893 * 109.47108 * 180.49297 * 5 2 1 7 7 C 1.46844 * 111.00165 * 200.06000 * 6 5 2 8 8 C 1.53038 * 109.52598 * 174.16341 * 7 6 5 9 9 C 1.53113 * 109.28179 * 59.17894 * 8 7 6 10 10 N 1.46894 * 109.52574 * 182.44493 * 9 8 7 11 11 C 1.46910 * 110.99985 * 274.68139 * 10 9 8 12 12 C 1.50693 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00553 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99845 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99822 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47134 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47114 * 119.99937 * 16 14 12 19 19 H 1.48496 * 109.47457 * 240.00271 * 16 14 12 20 20 C 1.53125 * 109.16000 * 302.35101 * 9 8 7 21 21 C 1.46847 * 111.00083 * 75.84965 * 6 5 2 22 22 H 1.08996 * 109.47491 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47511 * 300.00484 * 1 2 3 24 24 H 1.09008 * 109.46886 * 60.00147 * 1 2 3 25 25 H 0.96698 * 114.00561 * 300.00807 * 4 2 1 26 26 H 1.08996 * 109.46887 * 300.49230 * 5 2 1 27 27 H 1.08999 * 109.46886 * 60.49293 * 5 2 1 28 28 H 1.09004 * 109.46244 * 294.17911 * 7 6 5 29 29 H 1.09004 * 109.46000 * 54.14558 * 7 6 5 30 30 H 1.09006 * 109.50144 * 299.23636 * 8 7 6 31 31 H 1.09003 * 109.50512 * 179.12815 * 8 7 6 32 32 H 1.08998 * 109.57572 * 62.28209 * 9 8 7 33 33 H 1.00903 * 111.00340 * 150.73183 * 10 9 8 34 34 H 1.08994 * 109.46848 * 300.00274 * 11 10 9 35 35 H 1.08994 * 109.46570 * 59.99851 * 11 10 9 36 36 H 0.97002 * 119.99785 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.49731 * 297.71225 * 20 9 8 38 38 H 1.08996 * 109.53870 * 177.61524 * 20 9 8 39 39 H 1.08997 * 109.46344 * 305.85835 * 21 6 5 40 40 H 1.08999 * 109.45962 * 65.83590 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0399 -0.7213 1.2493 6 7 3.5088 -0.7110 1.2553 7 6 4.0388 -1.7610 2.1345 8 6 5.5627 -1.8159 2.0046 9 6 6.1523 -0.4563 2.3894 10 7 7.6100 -0.4849 2.2105 11 6 8.2759 -1.0312 3.4007 12 6 9.7665 -1.0454 3.1803 13 1 10.1783 -0.6844 2.2495 14 6 10.6049 -1.5184 4.1675 15 7 10.1035 -1.9576 5.3013 16 14 12.4527 -1.5354 3.8946 17 1 12.7591 -0.9922 2.5469 18 1 13.1133 -0.6975 4.9274 19 1 12.9548 -2.9295 3.9927 20 6 5.5477 0.6262 1.4909 21 6 4.0243 0.6103 1.6357 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.7209 -1.5953 -1.2329 26 1 1.6694 -0.2126 2.1392 27 1 1.6838 -1.7515 1.2448 28 1 3.7702 -1.5395 3.1675 29 1 3.6149 -2.7233 1.8475 30 1 5.8318 -2.0510 0.9748 31 1 5.9571 -2.5849 2.6689 32 1 5.9173 -0.2380 3.4311 33 1 7.9651 0.4327 1.9868 34 1 8.0419 -0.4099 4.2651 35 1 7.9255 -2.0478 3.5785 36 1 10.6933 -2.2906 5.9956 37 1 5.8166 0.4295 0.4530 38 1 5.9313 1.6023 1.7875 39 1 3.5898 1.3704 0.9864 40 1 3.7559 0.8205 2.6710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309035385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:00 Heat of formation + Delta-G solvation = -60.159928 kcal Electronic energy + Delta-G solvation = -17856.740234 eV Core-core repulsion = 15091.598767 eV Total energy + Delta-G solvation = -2765.141467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -39.26744 -37.39829 -35.15074 -32.85259 -31.61577 -30.67902 -30.06959 -26.78869 -25.20748 -23.27732 -22.37308 -21.54669 -20.79653 -19.32708 -16.74773 -16.38486 -16.05212 -15.47184 -14.82084 -14.65255 -14.53177 -14.35495 -13.64752 -13.47750 -13.28674 -12.62596 -12.48296 -12.35199 -12.10520 -11.94656 -11.60874 -11.34940 -11.16984 -10.92866 -10.87267 -10.84388 -10.52386 -10.19533 -10.07899 -10.05454 -9.62075 -9.09120 -8.45970 -8.20681 -7.23628 -6.01009 -4.02470 3.32660 3.39762 3.45448 3.78607 4.38925 4.45259 4.56523 4.90202 4.93329 5.02856 5.09059 5.21744 5.24044 5.35014 5.38051 5.48372 5.49969 5.56914 5.66184 5.76192 5.83029 5.89788 6.00012 6.03339 6.18933 6.33657 6.41609 6.63452 6.84617 7.14849 7.19211 7.32216 7.46048 7.62977 7.83416 8.17309 8.46421 8.67230 9.07813 9.62462 11.10207 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.064219 B = 0.003886 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.904363 B = 7204.397348 C = 7302.495059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.095 0.905 4 O -0.548 6.548 5 C 0.021 3.979 6 N -0.526 5.526 7 C 0.058 3.942 8 C -0.101 4.101 9 C 0.087 3.913 10 N -0.685 5.685 11 C 0.195 3.805 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.116 4.116 21 C 0.061 3.939 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.370 0.630 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.329 0.671 34 H -0.016 1.016 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.888 3.288 -7.572 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.048 3.952 3 H 0.113 0.887 4 O -0.353 6.353 5 C -0.107 4.107 6 N -0.251 5.251 7 C -0.070 4.070 8 C -0.139 4.139 9 C -0.024 4.024 10 N -0.316 5.316 11 C 0.068 3.932 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.155 4.155 21 C -0.067 4.067 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.216 0.784 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.145 0.855 34 H 0.001 0.999 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -18.379 3.088 -8.305 20.403 hybrid contribution 0.304 0.284 1.793 1.841 sum -18.075 3.371 -6.511 19.506 Atomic orbital electron populations 1.22504 0.96694 1.02484 1.02666 1.21861 0.91675 0.96865 0.84765 0.88725 1.86627 1.77296 1.28487 1.42850 1.22859 0.89125 1.01088 0.97655 1.61848 1.05813 1.04592 1.52816 1.22157 0.96798 0.94290 0.93717 1.21542 0.91677 0.97755 1.02969 1.21460 0.90431 0.94365 0.96113 1.60671 1.01112 1.28555 1.41225 1.19584 0.93605 0.94874 0.85156 1.21254 0.91114 1.41445 1.01239 0.91895 1.25003 0.99146 0.95463 0.95078 1.69981 1.35055 1.42963 1.05892 0.86429 0.85117 0.77628 0.78169 1.19617 1.21153 1.21008 1.21761 0.93448 0.98388 1.01853 1.22076 0.96159 0.90509 0.97988 0.92331 0.91785 0.91680 0.78366 0.94177 0.90801 0.95459 0.91124 0.90626 0.91447 0.95402 0.85456 0.99860 0.95434 0.93032 0.90290 0.92046 0.91115 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 9.53 37.16 0.35 -0.92 16 2 C 0.11 1.00 3.65 -26.73 -0.10 0.90 16 3 H 0.09 0.95 6.83 -51.93 -0.35 0.59 16 4 O -0.55 -6.01 13.21 -35.23 -0.47 -6.48 16 5 C 0.02 0.21 4.66 -3.83 -0.02 0.20 16 6 N -0.53 -6.81 4.46 -234.68 -1.05 -7.85 16 7 C 0.06 0.81 5.43 -3.84 -0.02 0.79 16 8 C -0.10 -1.74 5.59 -26.65 -0.15 -1.89 16 9 C 0.09 1.60 2.56 -67.59 -0.17 1.43 16 10 N -0.69 -15.15 6.30 -107.87 -0.68 -15.83 16 11 C 0.19 5.22 5.24 -4.97 -0.03 5.19 16 12 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.57 5.46 -17.81 -0.10 1.48 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 C -0.12 -1.77 5.36 -26.65 -0.14 -1.91 16 21 C 0.06 0.80 5.29 -3.84 -0.02 0.78 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.37 2.82 9.05 45.56 0.41 3.23 16 26 H 0.04 0.38 8.00 -51.93 -0.42 -0.03 16 27 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.26 7.54 -51.93 -0.39 0.87 16 32 H 0.03 0.55 7.80 -51.93 -0.41 0.15 16 33 H 0.33 6.95 8.35 -39.29 -0.33 6.63 16 34 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 35 H 0.03 0.79 7.51 -51.93 -0.39 0.40 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.83 6.71 -51.93 -0.35 0.48 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -31.60 317.03 -8.79 -40.39 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.38 Total: 3.59 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.71 Total: -9.07 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.99 Total: -50.20 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.47 Total: -6.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.60 -8.79 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.766 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds