Wall clock time and date at job start Mon Mar 30 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47703 * 2 1 4 4 O 1.42902 * 109.47078 * 239.99387 * 2 1 3 5 5 C 1.53005 * 109.46810 * 120.00122 * 2 1 3 6 6 N 1.46893 * 109.47108 * 180.49297 * 5 2 1 7 7 C 1.46844 * 111.00165 * 200.06000 * 6 5 2 8 8 C 1.53038 * 109.52598 * 174.16341 * 7 6 5 9 9 C 1.53113 * 109.28179 * 59.17894 * 8 7 6 10 10 N 1.46894 * 109.52574 * 182.44493 * 9 8 7 11 11 C 1.46910 * 110.99985 * 274.68139 * 10 9 8 12 12 C 1.50693 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00553 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99845 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99822 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47134 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47114 * 119.99937 * 16 14 12 19 19 H 1.48496 * 109.47457 * 240.00271 * 16 14 12 20 20 C 1.53125 * 109.16000 * 302.35101 * 9 8 7 21 21 C 1.46847 * 111.00083 * 75.84965 * 6 5 2 22 22 H 1.08996 * 109.47491 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47511 * 300.00484 * 1 2 3 24 24 H 1.09008 * 109.46886 * 60.00147 * 1 2 3 25 25 H 0.96698 * 114.00561 * 300.00807 * 4 2 1 26 26 H 1.08996 * 109.46887 * 300.49230 * 5 2 1 27 27 H 1.08999 * 109.46886 * 60.49293 * 5 2 1 28 28 H 1.09004 * 109.46244 * 294.17911 * 7 6 5 29 29 H 1.09004 * 109.46000 * 54.14558 * 7 6 5 30 30 H 1.09006 * 109.50144 * 299.23636 * 8 7 6 31 31 H 1.09003 * 109.50512 * 179.12815 * 8 7 6 32 32 H 1.08998 * 109.57572 * 62.28209 * 9 8 7 33 33 H 1.00903 * 111.00340 * 150.73183 * 10 9 8 34 34 H 1.08994 * 109.46848 * 300.00274 * 11 10 9 35 35 H 1.08994 * 109.46570 * 59.99851 * 11 10 9 36 36 H 0.97002 * 119.99785 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.49731 * 297.71225 * 20 9 8 38 38 H 1.08996 * 109.53870 * 177.61524 * 20 9 8 39 39 H 1.08997 * 109.46344 * 305.85835 * 21 6 5 40 40 H 1.08999 * 109.45962 * 65.83590 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0399 -0.7213 1.2493 6 7 3.5088 -0.7110 1.2553 7 6 4.0388 -1.7610 2.1345 8 6 5.5627 -1.8159 2.0046 9 6 6.1523 -0.4563 2.3894 10 7 7.6100 -0.4849 2.2105 11 6 8.2759 -1.0312 3.4007 12 6 9.7665 -1.0454 3.1803 13 1 10.1783 -0.6844 2.2495 14 6 10.6049 -1.5184 4.1675 15 7 10.1035 -1.9576 5.3013 16 14 12.4527 -1.5354 3.8946 17 1 12.7591 -0.9922 2.5469 18 1 13.1133 -0.6975 4.9274 19 1 12.9548 -2.9295 3.9927 20 6 5.5477 0.6262 1.4909 21 6 4.0243 0.6103 1.6357 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.7209 -1.5953 -1.2329 26 1 1.6694 -0.2126 2.1392 27 1 1.6838 -1.7515 1.2448 28 1 3.7702 -1.5395 3.1675 29 1 3.6149 -2.7233 1.8475 30 1 5.8318 -2.0510 0.9748 31 1 5.9571 -2.5849 2.6689 32 1 5.9173 -0.2380 3.4311 33 1 7.9651 0.4327 1.9868 34 1 8.0419 -0.4099 4.2651 35 1 7.9255 -2.0478 3.5785 36 1 10.6933 -2.2906 5.9956 37 1 5.8166 0.4295 0.4530 38 1 5.9313 1.6023 1.7875 39 1 3.5898 1.3704 0.9864 40 1 3.7559 0.8205 2.6710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309035385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:58 Heat of formation + Delta-G solvation = -85.508366 kcal Electronic energy + Delta-G solvation = -17857.839424 eV Core-core repulsion = 15091.598767 eV Total energy + Delta-G solvation = -2766.240658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.37907 -38.39640 -36.65569 -34.79213 -32.84316 -31.91280 -31.24878 -28.51688 -26.44660 -24.66247 -23.77188 -22.93936 -21.95153 -20.69100 -18.60145 -17.54227 -16.87923 -16.70937 -16.51659 -16.26991 -15.68301 -15.34695 -15.27532 -14.74163 -14.47000 -14.06949 -13.89108 -13.58578 -13.25436 -13.23057 -12.81330 -12.75025 -12.65599 -12.49043 -12.28825 -12.12937 -11.96434 -11.69683 -11.62965 -11.22399 -11.11481 -10.80369 -10.67880 -9.21052 -9.12836 -8.24182 -6.35554 1.40179 1.41119 1.55416 2.39210 2.84449 3.08917 3.47184 3.71198 3.76229 3.86755 4.00493 4.22202 4.26806 4.28303 4.35271 4.43583 4.51328 4.59809 4.65593 4.74979 4.80836 4.86236 4.91743 4.99134 5.01354 5.14403 5.21626 5.23239 5.27810 5.31571 5.41719 5.63299 6.02378 6.11650 6.18151 6.46267 6.72802 6.88847 7.02572 7.35683 8.87789 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.064219 B = 0.003886 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.904363 B = 7204.397348 C = 7302.495059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 H 0.086 0.914 4 O -0.572 6.572 5 C 0.023 3.977 6 N -0.536 5.536 7 C 0.068 3.932 8 C -0.097 4.097 9 C 0.084 3.916 10 N -0.685 5.685 11 C 0.212 3.788 12 C -0.536 4.536 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.107 4.107 21 C 0.065 3.935 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.383 0.617 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.026 0.974 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.012 0.988 33 H 0.334 0.666 34 H -0.044 1.044 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.631 3.721 -8.482 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.050 3.950 3 H 0.104 0.896 4 O -0.378 6.378 5 C -0.105 4.105 6 N -0.261 5.261 7 C -0.060 4.060 8 C -0.135 4.135 9 C -0.026 4.026 10 N -0.315 5.315 11 C 0.084 3.916 12 C -0.574 4.574 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.145 4.145 21 C -0.064 4.064 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.231 0.769 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.152 0.848 34 H -0.027 1.027 35 H 0.017 0.983 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.154 3.525 -9.232 21.552 hybrid contribution 0.481 0.138 2.069 2.128 sum -18.672 3.663 -7.163 20.332 Atomic orbital electron populations 1.22415 0.94672 1.03380 1.03080 1.21873 0.93156 0.96091 0.83856 0.89628 1.86587 1.77915 1.29728 1.43588 1.22945 0.86869 1.02303 0.98409 1.61830 1.07939 1.03998 1.52322 1.22016 0.94089 0.95839 0.94084 1.21458 0.94445 0.96134 1.01485 1.21588 0.88277 0.96582 0.96140 1.60588 1.03290 1.28887 1.38755 1.19198 0.93513 0.92983 0.85869 1.21592 0.92218 1.42022 1.01568 0.91762 1.25992 1.04666 0.94606 0.94570 1.70107 1.37177 1.43410 1.06835 0.85244 0.78301 0.77943 0.78560 1.18628 1.20193 1.20302 1.21672 0.95174 0.97353 1.00314 1.22044 0.94316 0.91337 0.98656 0.91222 0.90855 0.91769 0.76883 0.93286 0.89433 0.95564 0.89259 0.91566 0.93982 0.97023 0.84833 1.02673 0.98275 0.92595 0.90941 0.91118 0.89183 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.53 71.98 0.69 -1.26 16 2 C 0.11 1.77 3.65 30.60 0.11 1.88 16 3 H 0.09 1.52 6.83 -2.39 -0.02 1.51 16 4 O -0.57 -11.41 13.21 -148.98 -1.97 -13.37 16 5 C 0.02 0.39 4.66 86.31 0.40 0.79 16 6 N -0.54 -12.90 4.46 -896.39 -4.00 -16.90 16 7 C 0.07 1.82 5.43 86.33 0.47 2.29 16 8 C -0.10 -3.40 5.59 30.64 0.17 -3.22 16 9 C 0.08 3.17 2.56 45.00 0.12 3.29 16 10 N -0.68 -31.14 6.30 -495.18 -3.12 -34.26 16 11 C 0.21 11.87 5.24 85.55 0.45 12.32 16 12 C -0.54 -31.56 9.32 25.60 0.24 -31.32 16 13 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 14 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 15 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 16 Si 0.98 45.16 29.54 68.60 2.03 47.19 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.11 -3.18 5.36 30.65 0.16 -3.02 16 21 C 0.06 1.59 5.29 86.32 0.46 2.04 16 22 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 25 H 0.38 5.04 9.05 -74.06 -0.67 4.37 16 26 H 0.05 0.79 8.00 -2.39 -0.02 0.77 16 27 H 0.09 1.29 7.79 -2.39 -0.02 1.27 16 28 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.09 2.06 7.93 -2.38 -0.02 2.05 16 30 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.04 1.65 7.54 -2.39 -0.02 1.64 16 32 H 0.01 0.48 7.80 -2.39 -0.02 0.46 16 33 H 0.33 14.38 8.35 -89.69 -0.75 13.63 16 34 H -0.04 -2.67 8.06 -2.39 -0.02 -2.69 16 35 H 0.00 -0.05 7.51 -2.39 -0.02 -0.07 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 1.90 6.71 -2.39 -0.02 1.88 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -68.48 317.03 -3.46 -71.94 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.41 Total: 18.55 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.73 Total: -15.76 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -6.83 Total: -108.54 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.97 Total: -13.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.48 -3.46 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.568 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds