Wall clock time and date at job start Mon Mar 30 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47480 * 2 1 4 4 O 1.42903 * 109.46882 * 120.00286 * 2 1 3 5 5 C 1.52999 * 109.47083 * 239.99914 * 2 1 3 6 6 N 1.46896 * 109.47193 * 179.73587 * 5 2 1 7 7 C 1.46852 * 110.99325 * 169.82534 * 6 5 2 8 8 C 1.53038 * 109.51456 * 185.84725 * 7 6 5 9 9 C 1.53120 * 109.28158 * 300.81876 * 8 7 6 10 10 C 1.53116 * 109.15901 * 57.65475 * 9 8 7 11 11 H 1.09000 * 109.50693 * 62.28771 * 10 9 8 12 12 N 1.46898 * 109.53574 * 182.38439 * 10 9 8 13 13 C 1.46894 * 111.00370 * 274.82255 * 12 10 9 14 14 C 1.50699 * 109.47637 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99540 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00282 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99761 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47270 * 89.99695 * 18 16 14 20 20 H 1.48497 * 109.47169 * 210.00067 * 18 16 14 21 21 H 1.48499 * 109.47228 * 329.99635 * 18 16 14 22 22 C 1.46842 * 111.00039 * 294.03123 * 6 5 2 23 23 H 1.09004 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47079 * 300.00264 * 1 2 3 25 25 H 1.08997 * 109.47109 * 59.99973 * 1 2 3 26 26 H 0.96692 * 114.00576 * 59.99963 * 4 2 1 27 27 H 1.08997 * 109.47215 * 59.73168 * 5 2 1 28 28 H 1.09008 * 109.47017 * 299.73714 * 5 2 1 29 29 H 1.09000 * 109.46792 * 65.83320 * 7 6 5 30 30 H 1.09000 * 109.46447 * 305.86259 * 7 6 5 31 31 H 1.09000 * 109.50226 * 180.87876 * 8 7 6 32 32 H 1.08995 * 109.50162 * 60.76343 * 8 7 6 33 33 H 1.08996 * 109.52237 * 297.74986 * 9 8 7 34 34 H 1.08996 * 109.57431 * 177.59299 * 9 8 7 35 35 H 1.00900 * 110.99809 * 38.78038 * 12 10 9 36 36 H 1.09002 * 109.47166 * 300.00489 * 13 12 10 37 37 H 1.09005 * 109.46825 * 59.99788 * 13 12 10 38 38 H 0.97004 * 119.99745 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.46011 * 54.14693 * 22 6 5 40 40 H 1.08999 * 109.46508 * 294.16679 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7158 -1.2524 7 6 4.0361 -1.5999 -2.2998 8 6 5.5595 -1.6825 -2.1801 9 6 6.1549 -0.2791 -2.3234 10 6 5.5531 0.6339 -1.2516 11 1 5.8197 0.2597 -0.2632 12 7 6.0757 1.9967 -1.4173 13 6 7.3648 2.1534 -0.7307 14 6 7.8688 3.5605 -0.9231 15 1 7.2891 4.2679 -1.4976 16 6 9.0698 3.9449 -0.3656 17 7 9.7754 3.0837 0.3343 18 14 9.6941 5.6893 -0.6035 19 1 9.1917 6.5494 0.4980 20 1 11.1790 5.6893 -0.5936 21 1 9.2078 6.2161 -1.9040 22 6 4.0298 0.6494 -1.3983 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5952 1.2329 27 1 1.6728 -0.2103 -2.1392 28 1 1.6805 -1.7504 -1.2468 29 1 3.7698 -1.2020 -3.2791 30 1 3.6081 -2.5956 -2.1839 31 1 5.9520 -2.3264 -2.9672 32 1 5.8263 -2.0933 -1.2064 33 1 5.9213 0.1164 -3.3119 34 1 7.2363 -0.3264 -2.1963 35 1 6.1546 2.2374 -2.3940 36 1 7.2361 1.9554 0.3334 37 1 8.0858 1.4496 -1.1466 38 1 10.6202 3.3543 0.7268 39 1 3.5972 1.2874 -0.6275 40 1 3.7635 1.0366 -2.3818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309061725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:12 Heat of formation + Delta-G solvation = -59.510256 kcal Electronic energy + Delta-G solvation = -18070.821190 eV Core-core repulsion = 15305.707895 eV Total energy + Delta-G solvation = -2765.113295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.28059 -37.30762 -35.02213 -32.93739 -32.09205 -30.73121 -29.22328 -26.37141 -25.80830 -23.25384 -22.33162 -21.15551 -20.96665 -19.55141 -16.70276 -16.39874 -15.82432 -15.48253 -14.86251 -14.62801 -14.42700 -13.94298 -13.78839 -13.48520 -13.12746 -12.78980 -12.39796 -12.30421 -12.14753 -11.86904 -11.68480 -11.51700 -10.99964 -10.87938 -10.79415 -10.66489 -10.49764 -10.30346 -10.14704 -9.88489 -9.73994 -9.12805 -8.43910 -8.14824 -7.21069 -5.98802 -4.00638 3.35056 3.40555 3.44134 3.83618 4.45565 4.50324 4.63297 4.99654 5.04704 5.10559 5.12476 5.19779 5.34772 5.36949 5.38314 5.48996 5.57809 5.58447 5.74787 5.80362 5.86735 5.96738 5.99018 6.07619 6.15640 6.26498 6.32875 6.64155 6.69213 7.20604 7.24057 7.35395 7.50735 7.75054 7.83448 8.18521 8.45626 8.67548 9.08759 9.64002 11.12254 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.004895 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.050187 B = 5718.452071 C = 6261.789650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.101 0.899 4 O -0.546 6.546 5 C 0.026 3.974 6 N -0.529 5.529 7 C 0.059 3.941 8 C -0.112 4.112 9 C -0.150 4.150 10 C 0.093 3.907 11 H 0.080 0.920 12 N -0.686 5.686 13 C 0.197 3.803 14 C -0.514 4.514 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.070 3.930 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.368 0.632 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.327 0.673 36 H 0.028 0.972 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.062 -10.516 -4.659 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.044 3.956 3 H 0.119 0.881 4 O -0.349 6.349 5 C -0.103 4.103 6 N -0.254 5.254 7 C -0.069 4.069 8 C -0.150 4.150 9 C -0.189 4.189 10 C -0.019 4.019 11 H 0.098 0.902 12 N -0.315 5.315 13 C 0.070 3.930 14 C -0.553 4.553 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.058 4.058 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.214 0.786 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.143 0.857 36 H 0.046 0.954 37 H 0.005 0.995 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.807 -9.846 -3.460 18.941 hybrid contribution 0.479 0.171 -1.690 1.765 sum -15.327 -9.675 -5.150 18.843 Atomic orbital electron populations 1.22494 0.96664 1.02277 1.02781 1.21947 0.91815 0.97291 0.84579 0.88120 1.86675 1.77205 1.28255 1.42813 1.22810 0.88902 1.00773 0.97783 1.61795 1.05934 1.10510 1.47132 1.22068 0.96040 0.96536 0.92283 1.21514 0.93973 0.97392 1.02140 1.22351 1.01103 0.95796 0.99668 1.21467 0.92498 0.89293 0.98605 0.90209 1.60622 1.32262 1.21036 1.17548 1.19555 0.83091 0.96195 0.94152 1.21202 1.04307 0.96811 1.32959 0.92061 1.24981 0.96689 0.97591 0.95289 1.69967 1.14316 1.34557 1.34858 0.86494 0.77679 0.84634 0.78548 1.20617 1.21340 1.19915 1.22107 0.96134 0.87880 0.99696 0.92489 0.91579 0.91785 0.78639 0.94434 0.90938 0.95475 0.91422 0.92099 0.91086 0.92752 0.91532 0.85664 0.95384 0.99514 0.92950 0.90065 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.53 37.16 0.35 -1.15 16 2 C 0.10 1.14 3.47 -26.73 -0.09 1.04 16 3 H 0.10 1.29 6.42 -51.93 -0.33 0.96 16 4 O -0.55 -6.88 13.21 -35.23 -0.47 -7.34 16 5 C 0.03 0.28 4.62 -3.83 -0.02 0.26 16 6 N -0.53 -7.21 4.53 -234.66 -1.06 -8.27 16 7 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 8 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 9 C -0.15 -2.45 5.26 -26.61 -0.14 -2.59 16 10 C 0.09 1.73 2.63 -67.63 -0.18 1.55 16 11 H 0.08 1.68 7.80 -51.93 -0.41 1.27 16 12 N -0.69 -15.08 6.24 -107.91 -0.67 -15.75 16 13 C 0.20 5.28 5.24 -4.98 -0.03 5.25 16 14 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 15 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 18 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.07 1.11 4.90 -3.83 -0.02 1.09 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.37 3.19 9.04 45.56 0.41 3.60 16 27 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.07 0.66 7.98 -51.92 -0.41 0.25 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.07 1.21 7.53 -51.93 -0.39 0.82 16 35 H 0.33 6.88 8.44 -39.29 -0.33 6.55 16 36 H 0.03 0.82 8.06 -51.93 -0.42 0.40 16 37 H -0.01 -0.36 7.50 -51.93 -0.39 -0.75 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.38 6.21 -51.93 -0.32 1.06 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -31.39 316.45 -8.79 -40.18 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.36 Total: 5.13 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.72 Total: -9.16 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -1.00 Total: -50.58 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.47 Total: -7.34 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.39 -8.79 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.329 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds