Wall clock time and date at job start Mon Mar 30 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47480 * 2 1 4 4 O 1.42903 * 109.46882 * 120.00286 * 2 1 3 5 5 C 1.52999 * 109.47083 * 239.99914 * 2 1 3 6 6 N 1.46896 * 109.47193 * 179.73587 * 5 2 1 7 7 C 1.46852 * 110.99325 * 169.82534 * 6 5 2 8 8 C 1.53038 * 109.51456 * 185.84725 * 7 6 5 9 9 C 1.53120 * 109.28158 * 300.81876 * 8 7 6 10 10 C 1.53116 * 109.15901 * 57.65475 * 9 8 7 11 11 H 1.09000 * 109.50693 * 62.28771 * 10 9 8 12 12 N 1.46898 * 109.53574 * 182.38439 * 10 9 8 13 13 C 1.46894 * 111.00370 * 274.82255 * 12 10 9 14 14 C 1.50699 * 109.47637 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99540 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00282 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99761 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47270 * 89.99695 * 18 16 14 20 20 H 1.48497 * 109.47169 * 210.00067 * 18 16 14 21 21 H 1.48499 * 109.47228 * 329.99635 * 18 16 14 22 22 C 1.46842 * 111.00039 * 294.03123 * 6 5 2 23 23 H 1.09004 * 109.46910 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47079 * 300.00264 * 1 2 3 25 25 H 1.08997 * 109.47109 * 59.99973 * 1 2 3 26 26 H 0.96692 * 114.00576 * 59.99963 * 4 2 1 27 27 H 1.08997 * 109.47215 * 59.73168 * 5 2 1 28 28 H 1.09008 * 109.47017 * 299.73714 * 5 2 1 29 29 H 1.09000 * 109.46792 * 65.83320 * 7 6 5 30 30 H 1.09000 * 109.46447 * 305.86259 * 7 6 5 31 31 H 1.09000 * 109.50226 * 180.87876 * 8 7 6 32 32 H 1.08995 * 109.50162 * 60.76343 * 8 7 6 33 33 H 1.08996 * 109.52237 * 297.74986 * 9 8 7 34 34 H 1.08996 * 109.57431 * 177.59299 * 9 8 7 35 35 H 1.00900 * 110.99809 * 38.78038 * 12 10 9 36 36 H 1.09002 * 109.47166 * 300.00489 * 13 12 10 37 37 H 1.09005 * 109.46825 * 59.99788 * 13 12 10 38 38 H 0.97004 * 119.99745 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.46011 * 54.14693 * 22 6 5 40 40 H 1.08999 * 109.46508 * 294.16679 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7158 -1.2524 7 6 4.0361 -1.5999 -2.2998 8 6 5.5595 -1.6825 -2.1801 9 6 6.1549 -0.2791 -2.3234 10 6 5.5531 0.6339 -1.2516 11 1 5.8197 0.2597 -0.2632 12 7 6.0757 1.9967 -1.4173 13 6 7.3648 2.1534 -0.7307 14 6 7.8688 3.5605 -0.9231 15 1 7.2891 4.2679 -1.4976 16 6 9.0698 3.9449 -0.3656 17 7 9.7754 3.0837 0.3343 18 14 9.6941 5.6893 -0.6035 19 1 9.1917 6.5494 0.4980 20 1 11.1790 5.6893 -0.5936 21 1 9.2078 6.2161 -1.9040 22 6 4.0298 0.6494 -1.3983 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5952 1.2329 27 1 1.6728 -0.2103 -2.1392 28 1 1.6805 -1.7504 -1.2468 29 1 3.7698 -1.2020 -3.2791 30 1 3.6081 -2.5956 -2.1839 31 1 5.9520 -2.3264 -2.9672 32 1 5.8263 -2.0933 -1.2064 33 1 5.9213 0.1164 -3.3119 34 1 7.2363 -0.3264 -2.1963 35 1 6.1546 2.2374 -2.3940 36 1 7.2361 1.9554 0.3334 37 1 8.0858 1.4496 -1.1466 38 1 10.6202 3.3543 0.7268 39 1 3.5972 1.2874 -0.6275 40 1 3.7635 1.0366 -2.3818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309061725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:09 Heat of formation + Delta-G solvation = -85.017596 kcal Electronic energy + Delta-G solvation = -18071.927271 eV Core-core repulsion = 15305.707895 eV Total energy + Delta-G solvation = -2766.219376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.44446 -38.38564 -36.60498 -34.74207 -33.56100 -31.62500 -30.87348 -27.82218 -27.27139 -24.34150 -24.14728 -22.67351 -22.03342 -20.86463 -18.60406 -17.55968 -17.03003 -16.64052 -16.50172 -15.88737 -15.72666 -15.47850 -15.16946 -14.75082 -14.33148 -14.22688 -13.90319 -13.57714 -13.48111 -13.11841 -12.92342 -12.73713 -12.59067 -12.54706 -12.23333 -12.11838 -11.94841 -11.71275 -11.53868 -11.36007 -11.18833 -10.79676 -10.66240 -9.21139 -9.05361 -8.22779 -6.34776 1.40467 1.43144 1.54122 2.39384 2.80670 3.10212 3.54383 3.72552 3.87021 3.88542 3.94926 4.07403 4.24773 4.31484 4.35394 4.44233 4.56018 4.61964 4.68267 4.74148 4.76627 4.88883 4.91912 4.99077 5.05354 5.06849 5.20471 5.23927 5.29786 5.35938 5.36679 5.61433 6.00742 6.12847 6.21975 6.45401 6.72055 6.89123 7.03954 7.36348 8.88998 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.004895 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.050187 B = 5718.452071 C = 6261.789650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.073 0.927 4 O -0.573 6.573 5 C 0.029 3.971 6 N -0.543 5.543 7 C 0.061 3.939 8 C -0.107 4.107 9 C -0.143 4.143 10 C 0.092 3.908 11 H 0.046 0.954 12 N -0.684 5.684 13 C 0.215 3.785 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.085 3.915 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.334 0.666 36 H -0.009 1.009 37 H -0.037 1.037 38 H 0.265 0.735 39 H 0.064 0.936 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.617 -10.787 -6.174 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.041 3.959 3 H 0.091 0.909 4 O -0.380 6.380 5 C -0.098 4.098 6 N -0.268 5.268 7 C -0.067 4.067 8 C -0.145 4.145 9 C -0.183 4.183 10 C -0.019 4.019 11 H 0.064 0.936 12 N -0.314 5.314 13 C 0.087 3.913 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.186 1.186 22 C -0.044 4.044 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.232 0.768 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.152 0.848 36 H 0.009 0.991 37 H -0.020 1.020 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.399 -10.145 -4.989 20.749 hybrid contribution 0.943 0.180 -1.179 1.521 sum -16.456 -9.965 -6.168 20.203 Atomic orbital electron populations 1.22387 0.94200 1.03645 1.02984 1.21949 0.93665 0.95877 0.84406 0.90893 1.86631 1.77930 1.29737 1.43674 1.22874 0.86738 1.02434 0.97791 1.61748 1.08008 1.08915 1.48169 1.22123 0.94700 0.97606 0.92249 1.21502 0.95305 0.95341 1.02392 1.22235 0.99384 0.97545 0.99111 1.21484 0.94797 0.87852 0.97768 0.93584 1.60499 1.29429 1.23813 1.17671 1.19141 0.84654 0.95206 0.92282 1.21558 1.04976 0.97569 1.33439 0.91666 1.25989 0.96744 1.02479 0.94547 1.70107 1.14807 1.37018 1.35575 0.85289 0.77162 0.78537 0.79031 1.19900 1.20572 1.18565 1.21788 0.93455 0.89641 0.99467 0.90503 0.92196 0.90773 0.76790 0.93414 0.88287 0.94459 0.88659 0.89602 0.92357 0.91511 0.94251 0.84819 0.99050 1.01976 0.92598 0.91762 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.53 71.98 0.69 -1.79 16 2 C 0.10 2.10 3.47 30.60 0.11 2.20 16 3 H 0.07 1.91 6.42 -2.39 -0.02 1.89 16 4 O -0.57 -14.09 13.21 -148.98 -1.97 -16.05 16 5 C 0.03 0.56 4.62 86.30 0.40 0.96 16 6 N -0.54 -13.95 4.53 -896.34 -4.06 -18.01 16 7 C 0.06 1.31 5.46 86.33 0.47 1.78 16 8 C -0.11 -2.73 6.09 30.65 0.19 -2.55 16 9 C -0.14 -4.74 5.26 30.67 0.16 -4.57 16 10 C 0.09 3.55 2.63 44.97 0.12 3.66 16 11 H 0.05 2.07 7.80 -2.39 -0.02 2.05 16 12 N -0.68 -31.27 6.24 -495.31 -3.09 -34.36 16 13 C 0.22 12.17 5.24 85.56 0.45 12.61 16 14 C -0.54 -31.77 9.32 25.60 0.24 -31.53 16 15 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 18 Si 0.98 45.32 29.54 68.60 2.03 47.34 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 C 0.08 2.70 4.90 86.33 0.42 3.12 16 23 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.38 6.09 9.04 -74.06 -0.67 5.42 16 27 H 0.05 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.10 1.39 7.98 -2.38 -0.02 1.37 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.61 8.01 -2.39 -0.02 1.59 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.04 1.49 7.53 -2.39 -0.02 1.47 16 35 H 0.33 14.34 8.44 -89.69 -0.76 13.59 16 36 H -0.01 -0.54 8.06 -2.39 -0.02 -0.56 16 37 H -0.04 -2.25 7.50 -2.38 -0.02 -2.27 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.06 2.26 6.21 -2.39 -0.01 2.24 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.82 316.45 -3.52 -73.34 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.42 Total: 21.32 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.70 Total: -15.60 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -6.86 Total: -110.35 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.97 Total: -16.05 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.82 -3.52 -73.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.673 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds