Wall clock time and date at job start Mon Mar 30 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 O 1.42898 * 109.47261 * 239.99311 * 2 1 3 5 5 C 1.53007 * 109.46846 * 119.99309 * 2 1 3 6 6 N 1.46897 * 109.47074 * 186.09001 * 5 2 1 7 7 C 1.46846 * 111.00076 * 48.36621 * 6 5 2 8 8 C 1.53037 * 109.52496 * 174.16138 * 7 6 5 9 9 C 1.53119 * 109.31377 * 59.15484 * 8 7 6 10 10 C 1.53116 * 109.15716 * 302.40932 * 9 8 7 11 11 H 1.09006 * 109.50202 * 297.63302 * 10 9 8 12 12 N 1.46904 * 109.50581 * 177.55833 * 10 9 8 13 13 C 1.46899 * 111.00167 * 85.07178 * 12 10 9 14 14 C 1.50696 * 109.46761 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00745 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99813 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47086 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47420 * 59.99820 * 18 16 14 21 21 H 1.48498 * 109.47301 * 299.99775 * 18 16 14 22 22 C 1.46843 * 111.00239 * 284.15157 * 6 5 2 23 23 H 1.09002 * 109.47053 * 300.00903 * 1 2 3 24 24 H 1.09000 * 109.46907 * 59.99999 * 1 2 3 25 25 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 26 26 H 0.96698 * 114.00337 * 299.99906 * 4 2 1 27 27 H 1.09006 * 109.46402 * 66.09413 * 5 2 1 28 28 H 1.08996 * 109.47573 * 306.09498 * 5 2 1 29 29 H 1.09009 * 109.46164 * 294.17573 * 7 6 5 30 30 H 1.08999 * 109.46228 * 54.13615 * 7 6 5 31 31 H 1.09001 * 109.50155 * 179.12005 * 8 7 6 32 32 H 1.09000 * 109.49885 * 299.19138 * 8 7 6 33 33 H 1.08995 * 109.55672 * 182.48479 * 9 8 7 34 34 H 1.09007 * 109.49151 * 62.28703 * 9 8 7 35 35 H 1.00903 * 110.99235 * 321.11740 * 12 10 9 36 36 H 1.08996 * 109.46973 * 60.00440 * 13 12 10 37 37 H 1.08997 * 109.47229 * 300.00554 * 13 12 10 38 38 H 0.96997 * 120.00579 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46374 * 65.82447 * 22 6 5 40 40 H 1.08998 * 109.46632 * 305.85807 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 7 3.5016 -0.5952 1.3252 7 6 3.9211 0.7971 1.1208 8 6 5.4296 0.9156 1.3499 9 6 6.1642 -0.0070 0.3734 10 6 5.6731 -1.4435 0.5733 11 1 5.9136 -1.7729 1.5842 12 7 6.3303 -2.3264 -0.3995 13 6 7.6390 -2.7739 0.0956 14 6 8.2816 -3.6750 -0.9271 15 1 7.7695 -3.8931 -1.8526 16 6 9.5236 -4.2210 -0.6813 17 7 10.1476 -3.9551 0.4454 18 14 10.3206 -5.3374 -1.9494 19 1 11.6434 -5.7899 -1.4488 20 1 10.5016 -4.5922 -3.2210 21 1 9.4506 -6.5173 -2.1867 22 6 4.1576 -1.4937 0.3667 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7211 -1.5953 -1.2327 27 1 1.7684 -1.7755 1.1965 28 1 1.5903 -0.2741 2.1360 29 1 3.6836 1.1021 0.1016 30 1 3.3950 1.4420 1.8246 31 1 5.7432 1.9461 1.1829 32 1 5.6661 0.6247 2.3734 33 1 7.2365 0.0410 0.5627 34 1 5.9593 0.3089 -0.6495 35 1 6.4188 -1.8734 -1.2968 36 1 7.5066 -3.3201 1.0295 37 1 8.2776 -1.9077 0.2687 38 1 9.7339 -3.3751 1.1037 39 1 3.9190 -1.1780 -0.6490 40 1 3.8033 -2.5126 0.5228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309061727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:27 Heat of formation + Delta-G solvation = -60.978734 kcal Electronic energy + Delta-G solvation = -18291.805482 eV Core-core repulsion = 15526.628509 eV Total energy + Delta-G solvation = -2765.176973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.68505 -37.30815 -35.09085 -33.12387 -32.03599 -31.06328 -29.00881 -26.34753 -25.35705 -23.18115 -22.49577 -21.92827 -20.90364 -19.45684 -16.90397 -16.72861 -16.12620 -15.35222 -14.95675 -14.76158 -14.31723 -14.00504 -13.66406 -13.54393 -13.17251 -12.83343 -12.53452 -12.27585 -12.11687 -12.04329 -11.68586 -11.34879 -11.24109 -10.96847 -10.82864 -10.62655 -10.55657 -10.40391 -10.21487 -10.10564 -9.95905 -8.59634 -8.37148 -7.98773 -7.30714 -6.33796 -4.02319 3.47072 3.49770 3.68265 3.93526 4.17129 4.53631 4.57298 4.85766 4.88459 4.97448 5.10191 5.15376 5.26757 5.39268 5.42901 5.44049 5.57269 5.62282 5.67886 5.77367 5.86750 5.89872 5.96148 6.00853 6.17605 6.21527 6.30375 6.58851 6.64210 7.02689 7.16040 7.21138 7.27807 7.46964 7.85647 8.21496 8.53268 8.62590 8.91448 9.69460 11.06042 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.004769 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.411225 B = 5869.491080 C = 6310.688987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 H 0.100 0.900 4 O -0.557 6.557 5 C 0.025 3.975 6 N -0.533 5.533 7 C 0.053 3.947 8 C -0.112 4.112 9 C -0.149 4.149 10 C 0.090 3.910 11 H 0.072 0.928 12 N -0.678 5.678 13 C 0.186 3.814 14 C -0.595 4.595 15 H 0.055 0.945 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 1.074 2.926 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.059 3.941 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.375 0.625 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.331 0.669 36 H 0.017 0.983 37 H -0.024 1.024 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 9.745 0.976 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.001 3.999 3 H 0.118 0.882 4 O -0.363 6.363 5 C -0.104 4.104 6 N -0.256 5.256 7 C -0.075 4.075 8 C -0.150 4.150 9 C -0.188 4.188 10 C -0.021 4.021 11 H 0.091 0.909 12 N -0.307 5.307 13 C 0.059 3.941 14 C -0.634 4.634 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.902 3.098 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.068 4.068 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.223 0.777 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.035 0.965 37 H -0.006 1.006 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.251 8.677 1.254 18.465 hybrid contribution -1.439 1.530 -0.339 2.128 sum -17.690 10.207 0.915 20.444 Atomic orbital electron populations 1.22457 0.96513 1.02530 1.02563 1.22760 0.93169 0.97853 0.86161 0.88216 1.86621 1.76566 1.29213 1.43884 1.22918 0.88986 1.01265 0.97197 1.62109 1.04923 1.06565 1.52027 1.22121 0.96321 0.89624 0.99440 1.21512 0.94088 0.99010 1.00418 1.22332 1.00308 0.97218 0.98970 1.21518 0.93146 0.89909 0.97566 0.90937 1.60522 1.25447 1.40395 1.04320 1.19650 0.84081 0.93875 0.96465 1.22022 1.04767 1.31725 1.04850 0.92656 1.25860 0.94602 0.98497 1.00002 1.70785 1.40543 1.35971 1.07790 0.83480 0.76070 0.75785 0.74500 1.20854 1.21513 1.21383 1.22262 0.93988 0.95850 0.94729 0.91659 0.92012 0.92250 0.77739 0.90492 0.90137 0.94282 0.91524 0.92076 0.91385 0.91931 0.92476 0.85248 0.96504 1.00621 0.92290 0.92144 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.53 37.16 0.35 -0.98 16 2 C 0.06 0.58 3.07 -26.73 -0.08 0.50 16 3 H 0.10 1.02 6.06 -51.93 -0.31 0.70 16 4 O -0.56 -6.33 10.56 -35.23 -0.37 -6.70 16 5 C 0.03 0.26 5.27 -3.82 -0.02 0.24 16 6 N -0.53 -7.11 4.86 -234.67 -1.14 -8.25 16 7 C 0.05 0.66 4.49 -3.83 -0.02 0.64 16 8 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 9 C -0.15 -2.49 5.26 -26.61 -0.14 -2.63 16 10 C 0.09 1.67 2.63 -67.63 -0.18 1.49 16 11 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 12 N -0.68 -15.06 6.24 -107.91 -0.67 -15.73 16 13 C 0.19 5.00 4.55 -4.98 -0.02 4.97 16 14 C -0.60 -17.44 9.32 -34.44 -0.32 -17.76 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -28.54 13.65 55.43 0.76 -27.78 16 18 Si 1.07 25.81 29.90 -169.99 -5.08 20.72 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.06 0.93 4.57 -3.84 -0.02 0.91 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.37 3.26 9.05 45.56 0.41 3.67 16 27 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.51 6.45 -51.92 -0.34 0.17 16 30 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.33 7.19 8.44 -39.29 -0.33 6.86 16 36 H 0.02 0.49 7.92 -51.93 -0.41 0.07 16 37 H -0.02 -0.66 7.36 -51.93 -0.38 -1.05 16 38 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 39 H 0.06 0.97 5.79 -51.93 -0.30 0.67 16 40 H 0.07 1.17 7.96 -51.93 -0.41 0.75 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -31.89 309.10 -8.72 -40.61 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.16 Total: 6.46 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.70 Total: -13.99 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -1.06 Total: -51.76 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.37 Total: -6.70 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.89 -8.72 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.370 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds