Wall clock time and date at job start Mon Mar 30 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 O 1.42898 * 109.47261 * 239.99311 * 2 1 3 5 5 C 1.53007 * 109.46846 * 119.99309 * 2 1 3 6 6 N 1.46897 * 109.47074 * 186.09001 * 5 2 1 7 7 C 1.46846 * 111.00076 * 48.36621 * 6 5 2 8 8 C 1.53037 * 109.52496 * 174.16138 * 7 6 5 9 9 C 1.53119 * 109.31377 * 59.15484 * 8 7 6 10 10 C 1.53116 * 109.15716 * 302.40932 * 9 8 7 11 11 H 1.09006 * 109.50202 * 297.63302 * 10 9 8 12 12 N 1.46904 * 109.50581 * 177.55833 * 10 9 8 13 13 C 1.46899 * 111.00167 * 85.07178 * 12 10 9 14 14 C 1.50696 * 109.46761 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00745 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99754 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99813 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47086 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47420 * 59.99820 * 18 16 14 21 21 H 1.48498 * 109.47301 * 299.99775 * 18 16 14 22 22 C 1.46843 * 111.00239 * 284.15157 * 6 5 2 23 23 H 1.09002 * 109.47053 * 300.00903 * 1 2 3 24 24 H 1.09000 * 109.46907 * 59.99999 * 1 2 3 25 25 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 26 26 H 0.96698 * 114.00337 * 299.99906 * 4 2 1 27 27 H 1.09006 * 109.46402 * 66.09413 * 5 2 1 28 28 H 1.08996 * 109.47573 * 306.09498 * 5 2 1 29 29 H 1.09009 * 109.46164 * 294.17573 * 7 6 5 30 30 H 1.08999 * 109.46228 * 54.13615 * 7 6 5 31 31 H 1.09001 * 109.50155 * 179.12005 * 8 7 6 32 32 H 1.09000 * 109.49885 * 299.19138 * 8 7 6 33 33 H 1.08995 * 109.55672 * 182.48479 * 9 8 7 34 34 H 1.09007 * 109.49151 * 62.28703 * 9 8 7 35 35 H 1.00903 * 110.99235 * 321.11740 * 12 10 9 36 36 H 1.08996 * 109.46973 * 60.00440 * 13 12 10 37 37 H 1.08997 * 109.47229 * 300.00554 * 13 12 10 38 38 H 0.96997 * 120.00579 * 0.02562 * 17 16 14 39 39 H 1.09004 * 109.46374 * 65.82447 * 22 6 5 40 40 H 1.08998 * 109.46632 * 305.85807 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7211 1.2494 6 7 3.5016 -0.5952 1.3252 7 6 3.9211 0.7971 1.1208 8 6 5.4296 0.9156 1.3499 9 6 6.1642 -0.0070 0.3734 10 6 5.6731 -1.4435 0.5733 11 1 5.9136 -1.7729 1.5842 12 7 6.3303 -2.3264 -0.3995 13 6 7.6390 -2.7739 0.0956 14 6 8.2816 -3.6750 -0.9271 15 1 7.7695 -3.8931 -1.8526 16 6 9.5236 -4.2210 -0.6813 17 7 10.1476 -3.9551 0.4454 18 14 10.3206 -5.3374 -1.9494 19 1 11.6434 -5.7899 -1.4488 20 1 10.5016 -4.5922 -3.2210 21 1 9.4506 -6.5173 -2.1867 22 6 4.1576 -1.4937 0.3667 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7211 -1.5953 -1.2327 27 1 1.7684 -1.7755 1.1965 28 1 1.5903 -0.2741 2.1360 29 1 3.6836 1.1021 0.1016 30 1 3.3950 1.4420 1.8246 31 1 5.7432 1.9461 1.1829 32 1 5.6661 0.6247 2.3734 33 1 7.2365 0.0410 0.5627 34 1 5.9593 0.3089 -0.6495 35 1 6.4188 -1.8734 -1.2968 36 1 7.5066 -3.3201 1.0295 37 1 8.2776 -1.9077 0.2687 38 1 9.7339 -3.3751 1.1037 39 1 3.9190 -1.1780 -0.6490 40 1 3.8033 -2.5126 0.5228 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309061727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:27 Heat of formation + Delta-G solvation = -86.741317 kcal Electronic energy + Delta-G solvation = -18292.922631 eV Core-core repulsion = 15526.628509 eV Total energy + Delta-G solvation = -2766.294122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76959 -38.46120 -36.65186 -34.92129 -33.47517 -31.92465 -30.57821 -27.40176 -27.23626 -24.54454 -23.90274 -23.41416 -22.17191 -20.71558 -19.02387 -17.69415 -16.97368 -16.57716 -16.21191 -15.93562 -15.70045 -15.60143 -15.50348 -14.94484 -14.29581 -14.16157 -13.99841 -13.66626 -13.35721 -13.15159 -12.87666 -12.74797 -12.59338 -12.38472 -12.33591 -11.96231 -11.91350 -11.81864 -11.57943 -11.50120 -11.21843 -10.76636 -10.61889 -9.22444 -8.97791 -8.72356 -6.43342 1.53479 1.62651 1.82426 2.55469 2.86050 3.12477 3.42655 3.57273 3.78275 3.83288 3.92773 4.03027 4.13583 4.23534 4.30266 4.44141 4.53833 4.61893 4.64166 4.72473 4.77867 4.86601 4.88972 4.90418 4.95410 4.99101 5.07379 5.13634 5.25616 5.28262 5.31036 5.72019 5.98154 6.13056 6.17682 6.37906 6.53921 6.67448 6.77993 7.39471 8.67085 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.004769 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.411225 B = 5869.491080 C = 6310.688987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.095 0.905 4 O -0.579 6.579 5 C 0.026 3.974 6 N -0.544 5.544 7 C 0.057 3.943 8 C -0.108 4.108 9 C -0.143 4.143 10 C 0.088 3.912 11 H 0.047 0.953 12 N -0.676 5.676 13 C 0.201 3.799 14 C -0.612 4.612 15 H 0.057 0.943 16 C -0.037 4.037 17 N -0.936 5.936 18 Si 1.125 2.875 19 H -0.283 1.283 20 H -0.267 1.267 21 H -0.269 1.269 22 C 0.077 3.923 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.384 0.616 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.334 0.666 36 H -0.010 1.010 37 H -0.044 1.044 38 H 0.252 0.748 39 H 0.061 0.939 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 10.275 0.247 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.004 3.996 3 H 0.113 0.887 4 O -0.386 6.386 5 C -0.102 4.102 6 N -0.268 5.268 7 C -0.071 4.071 8 C -0.146 4.146 9 C -0.182 4.182 10 C -0.023 4.023 11 H 0.065 0.935 12 N -0.306 5.306 13 C 0.072 3.928 14 C -0.650 4.650 15 H 0.075 0.925 16 C -0.235 4.235 17 N -0.573 5.573 18 Si 0.945 3.055 19 H -0.208 1.208 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.051 4.051 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.233 0.767 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.008 0.992 37 H -0.027 1.027 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.968 9.233 0.535 20.209 hybrid contribution -0.977 1.408 -0.057 1.715 sum -18.945 10.641 0.478 21.734 Atomic orbital electron populations 1.22375 0.94617 1.03215 1.03109 1.22748 0.94588 0.97171 0.85102 0.88677 1.86581 1.77171 1.30148 1.44740 1.23013 0.86758 1.01924 0.98488 1.62074 1.06925 1.06681 1.51114 1.22142 0.95275 0.89453 1.00234 1.21509 0.94955 0.99272 0.98857 1.22220 0.99076 0.96702 1.00235 1.21591 0.95200 0.90365 0.95138 0.93501 1.60434 1.22826 1.42114 1.05180 1.19310 0.85859 0.92620 0.94983 1.22390 1.05295 1.32088 1.05269 0.92507 1.27540 0.95477 0.99426 1.01020 1.70923 1.40987 1.36797 1.08628 0.82840 0.75322 0.74633 0.72659 1.20792 1.19240 1.19412 1.21955 0.91487 0.96206 0.95432 0.90255 0.92303 0.91529 0.76659 0.90217 0.88209 0.94296 0.88806 0.89870 0.92079 0.94506 0.92054 0.84835 0.99203 1.02666 0.93864 0.92083 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.53 71.98 0.69 -1.39 16 2 C 0.06 1.06 3.07 30.60 0.09 1.15 16 3 H 0.10 1.68 6.06 -2.39 -0.01 1.67 16 4 O -0.58 -12.17 10.56 -148.98 -1.57 -13.74 16 5 C 0.03 0.47 5.27 86.31 0.45 0.93 16 6 N -0.54 -13.63 4.86 -896.35 -4.35 -17.98 16 7 C 0.06 1.28 4.49 86.33 0.39 1.66 16 8 C -0.11 -2.81 6.09 30.65 0.19 -2.63 16 9 C -0.14 -4.83 5.26 30.67 0.16 -4.67 16 10 C 0.09 3.34 2.63 44.97 0.12 3.46 16 11 H 0.05 2.01 7.80 -2.38 -0.02 2.00 16 12 N -0.68 -30.88 6.24 -495.31 -3.09 -33.97 16 13 C 0.20 11.21 4.55 85.56 0.39 11.60 16 14 C -0.61 -36.48 9.32 25.60 0.24 -36.24 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 16 C -0.04 -2.23 5.46 84.66 0.46 -1.77 16 17 N -0.94 -59.71 13.65 21.45 0.29 -59.41 16 18 Si 1.13 51.36 29.90 68.60 2.05 53.41 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C 0.08 2.39 4.57 86.33 0.39 2.78 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.38 6.12 9.05 -74.06 -0.67 5.45 16 27 H 0.08 1.40 7.87 -2.38 -0.02 1.38 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.04 0.91 6.45 -2.38 -0.02 0.89 16 30 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.40 7.53 -2.39 -0.02 1.39 16 34 H 0.06 2.01 8.10 -2.38 -0.02 1.99 16 35 H 0.33 14.78 8.44 -89.69 -0.76 14.03 16 36 H -0.01 -0.61 7.92 -2.39 -0.02 -0.63 16 37 H -0.04 -2.61 7.36 -2.39 -0.02 -2.62 16 38 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 39 H 0.06 1.90 5.79 -2.38 -0.01 1.88 16 40 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16 Total: -1.00 -69.61 309.10 -3.41 -73.02 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.31 Total: 23.78 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 3.57 Total: -25.10 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -7.15 Total: -111.37 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.57 Total: -13.74 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Total: -69.61 -3.41 -73.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.724 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds