Wall clock time and date at job start Mon Mar 30 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 O 1.42899 * 109.47368 * 239.99719 * 2 1 3 5 5 C 1.53001 * 109.46900 * 119.99696 * 2 1 3 6 6 N 1.46902 * 109.47015 * 178.76189 * 5 2 1 7 7 C 1.46854 * 110.99896 * 51.99639 * 6 5 2 8 8 C 1.53032 * 109.52212 * 185.83673 * 7 6 5 9 9 C 1.53117 * 109.28332 * 300.82038 * 8 7 6 10 10 C 1.53121 * 109.15767 * 57.65547 * 9 8 7 11 11 H 1.09001 * 109.50755 * 62.28759 * 10 9 8 12 12 N 1.46903 * 109.50423 * 182.40573 * 10 9 8 13 13 C 1.46890 * 110.99928 * 274.80401 * 12 10 9 14 14 C 1.50707 * 109.47015 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99958 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99864 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47057 * 59.99937 * 18 16 14 20 20 H 1.48500 * 109.47366 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47032 * 299.99941 * 18 16 14 22 22 C 1.46843 * 110.99968 * 176.20388 * 6 5 2 23 23 H 1.08998 * 109.47450 * 300.00181 * 1 2 3 24 24 H 1.09005 * 109.46729 * 60.00086 * 1 2 3 25 25 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 26 26 H 0.96695 * 114.00106 * 300.00326 * 4 2 1 27 27 H 1.08992 * 109.47186 * 58.76539 * 5 2 1 28 28 H 1.09000 * 109.47335 * 298.76134 * 5 2 1 29 29 H 1.08996 * 109.46301 * 305.85575 * 7 6 5 30 30 H 1.09002 * 109.45831 * 65.82345 * 7 6 5 31 31 H 1.09002 * 109.50264 * 180.88079 * 8 7 6 32 32 H 1.09006 * 109.53784 * 60.78236 * 8 7 6 33 33 H 1.09001 * 109.52362 * 297.75187 * 9 8 7 34 34 H 1.09001 * 109.52422 * 177.55778 * 9 8 7 35 35 H 1.00903 * 110.99731 * 38.75679 * 12 10 9 36 36 H 1.08997 * 109.47020 * 299.99362 * 13 12 10 37 37 H 1.09000 * 109.47438 * 59.99938 * 13 12 10 38 38 H 0.97003 * 119.99420 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46530 * 294.17685 * 22 6 5 40 40 H 1.09000 * 109.46390 * 54.16010 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5087 -0.7472 1.2345 7 6 4.0568 0.5995 1.0283 8 6 5.5769 0.5148 0.8732 9 6 6.1793 -0.1144 2.1324 10 6 5.5563 -1.4959 2.3512 11 1 5.7996 -2.1426 1.5081 12 7 6.0865 -2.0826 3.5892 13 6 7.3604 -2.7710 3.3421 14 6 7.8720 -3.3592 4.6318 15 1 7.3075 -3.2337 5.5439 16 6 9.0613 -4.0565 4.6475 17 7 9.7490 -4.2089 3.5368 18 14 9.6959 -4.7850 6.2463 19 1 8.7042 -5.7549 6.7763 20 1 10.9837 -5.4810 5.9965 21 1 9.9040 -3.6985 7.2371 22 6 4.0367 -1.3529 2.4635 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7211 -1.5952 -1.2328 27 1 1.6587 -1.7422 1.2605 28 1 1.6949 -0.1947 2.1391 29 1 3.6234 1.0340 0.1275 30 1 3.8136 1.2259 1.8866 31 1 5.9850 1.5161 0.7358 32 1 5.8212 -0.0998 0.0067 33 1 5.9690 0.5204 2.9932 34 1 7.2574 -0.2165 2.0086 35 1 6.1880 -1.3810 4.3073 36 1 7.2073 -3.5686 2.6151 37 1 8.0885 -2.0593 2.9528 38 1 10.5855 -4.6998 3.5479 39 1 3.7937 -0.7174 3.3151 40 1 3.5890 -2.3366 2.6050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309061728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:38 Heat of formation + Delta-G solvation = -58.334286 kcal Electronic energy + Delta-G solvation = -17974.769906 eV Core-core repulsion = 15209.707605 eV Total energy + Delta-G solvation = -2765.062301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -39.35985 -37.39828 -34.99546 -32.94198 -32.02033 -30.98007 -29.16421 -26.39047 -25.81800 -23.17844 -22.47908 -21.58017 -20.58386 -19.54400 -16.82018 -16.27512 -16.02769 -15.48653 -14.99343 -14.56009 -14.36358 -14.05923 -13.85199 -13.39817 -13.22235 -12.82281 -12.39683 -12.33520 -12.08167 -11.94530 -11.81444 -11.54441 -11.09672 -10.87002 -10.74044 -10.67453 -10.43035 -10.31510 -10.17799 -10.06455 -9.69145 -9.14901 -8.45638 -8.14977 -7.23303 -6.00476 -4.02562 3.34886 3.38720 3.41733 3.82642 4.38125 4.45903 4.57009 4.89280 4.92443 5.10531 5.11627 5.22491 5.33111 5.35157 5.39549 5.46508 5.55808 5.60808 5.75144 5.76806 5.85159 5.95555 5.98968 6.04888 6.12631 6.26590 6.35206 6.62625 6.68445 7.20201 7.23892 7.33668 7.48719 7.61831 7.81298 8.16504 8.43204 8.65163 9.06592 9.62101 11.10476 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047466 B = 0.004178 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.753193 B = 6700.289896 C = 6888.974788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.097 0.903 4 O -0.551 6.551 5 C 0.024 3.976 6 N -0.528 5.528 7 C 0.054 3.946 8 C -0.111 4.111 9 C -0.150 4.150 10 C 0.092 3.908 11 H 0.079 0.921 12 N -0.686 5.686 13 C 0.197 3.803 14 C -0.515 4.515 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.071 3.929 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.374 0.626 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.327 0.673 36 H 0.028 0.972 37 H -0.012 1.012 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 9.798 -6.382 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.115 0.885 4 O -0.356 6.356 5 C -0.105 4.105 6 N -0.253 5.253 7 C -0.074 4.074 8 C -0.150 4.150 9 C -0.189 4.189 10 C -0.019 4.019 11 H 0.097 0.903 12 N -0.315 5.315 13 C 0.070 3.930 14 C -0.554 4.554 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.057 4.057 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.046 0.954 37 H 0.005 0.995 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.770 9.399 -6.995 19.646 hybrid contribution 0.511 0.310 1.626 1.732 sum -15.258 9.708 -5.370 18.866 Atomic orbital electron populations 1.22495 0.96514 1.02666 1.02627 1.21977 0.92177 0.96825 0.84868 0.88532 1.86582 1.77349 1.28877 1.42754 1.22835 0.89050 1.01253 0.97313 1.61829 1.05105 1.20871 1.37511 1.22156 0.95929 0.89319 0.99956 1.21504 0.94037 1.00400 0.99020 1.22353 1.01019 0.98168 0.97365 1.21470 0.92398 0.93261 0.94764 0.90284 1.60632 1.32831 1.31484 1.06572 1.19551 0.83383 0.92846 0.97205 1.21166 1.05362 1.34014 0.94868 0.92102 1.24986 0.96685 0.96366 0.96513 1.69960 1.15362 1.41861 1.26513 0.86550 0.77958 0.79290 0.83519 1.20172 1.21346 1.20316 1.22073 0.96105 0.99020 0.88550 0.91752 0.91712 0.92150 0.77885 0.90415 0.94459 0.90523 0.95691 0.92161 0.91048 0.92764 0.91563 0.85612 0.95428 0.99470 0.92872 0.95489 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.53 37.16 0.35 -0.97 16 2 C 0.10 0.95 3.00 -26.73 -0.08 0.87 16 3 H 0.10 0.94 6.27 -51.93 -0.33 0.61 16 4 O -0.55 -6.05 13.18 -35.23 -0.46 -6.51 16 5 C 0.02 0.26 4.79 -3.82 -0.02 0.24 16 6 N -0.53 -7.20 4.61 -234.67 -1.08 -8.29 16 7 C 0.05 0.70 5.04 -3.83 -0.02 0.68 16 8 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 9 C -0.15 -2.46 5.25 -26.61 -0.14 -2.60 16 10 C 0.09 1.70 2.63 -67.63 -0.18 1.52 16 11 H 0.08 1.62 7.80 -51.93 -0.41 1.21 16 12 N -0.69 -14.92 6.24 -107.90 -0.67 -15.59 16 13 C 0.20 5.23 5.24 -4.98 -0.03 5.21 16 14 C -0.52 -14.79 9.32 -34.44 -0.32 -15.12 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 C 0.07 1.11 5.07 -3.83 -0.02 1.09 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.37 3.02 9.04 45.56 0.41 3.43 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.92 5.87 -51.93 -0.30 0.62 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.86 8.10 -51.93 -0.42 0.43 16 34 H 0.07 1.21 7.54 -51.93 -0.39 0.82 16 35 H 0.33 6.85 8.44 -39.29 -0.33 6.52 16 36 H 0.03 0.80 8.06 -51.93 -0.42 0.38 16 37 H -0.01 -0.35 7.50 -51.93 -0.39 -0.74 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -30.88 315.73 -8.80 -39.68 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.35 Total: 4.77 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.71 Total: -9.29 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.02 Total: -50.28 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.46 Total: -6.51 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.88 -8.80 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.659 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds