Wall clock time and date at job start Mon Mar 30 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 O 1.42899 * 109.47368 * 239.99719 * 2 1 3 5 5 C 1.53001 * 109.46900 * 119.99696 * 2 1 3 6 6 N 1.46902 * 109.47015 * 178.76189 * 5 2 1 7 7 C 1.46854 * 110.99896 * 51.99639 * 6 5 2 8 8 C 1.53032 * 109.52212 * 185.83673 * 7 6 5 9 9 C 1.53117 * 109.28332 * 300.82038 * 8 7 6 10 10 C 1.53121 * 109.15767 * 57.65547 * 9 8 7 11 11 H 1.09001 * 109.50755 * 62.28759 * 10 9 8 12 12 N 1.46903 * 109.50423 * 182.40573 * 10 9 8 13 13 C 1.46890 * 110.99928 * 274.80401 * 12 10 9 14 14 C 1.50707 * 109.47015 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99958 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99864 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47057 * 59.99937 * 18 16 14 20 20 H 1.48500 * 109.47366 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47032 * 299.99941 * 18 16 14 22 22 C 1.46843 * 110.99968 * 176.20388 * 6 5 2 23 23 H 1.08998 * 109.47450 * 300.00181 * 1 2 3 24 24 H 1.09005 * 109.46729 * 60.00086 * 1 2 3 25 25 H 1.08999 * 109.46904 * 180.02562 * 1 2 3 26 26 H 0.96695 * 114.00106 * 300.00326 * 4 2 1 27 27 H 1.08992 * 109.47186 * 58.76539 * 5 2 1 28 28 H 1.09000 * 109.47335 * 298.76134 * 5 2 1 29 29 H 1.08996 * 109.46301 * 305.85575 * 7 6 5 30 30 H 1.09002 * 109.45831 * 65.82345 * 7 6 5 31 31 H 1.09002 * 109.50264 * 180.88079 * 8 7 6 32 32 H 1.09006 * 109.53784 * 60.78236 * 8 7 6 33 33 H 1.09001 * 109.52362 * 297.75187 * 9 8 7 34 34 H 1.09001 * 109.52422 * 177.55778 * 9 8 7 35 35 H 1.00903 * 110.99731 * 38.75679 * 12 10 9 36 36 H 1.08997 * 109.47020 * 299.99362 * 13 12 10 37 37 H 1.09000 * 109.47438 * 59.99938 * 13 12 10 38 38 H 0.97003 * 119.99420 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46530 * 294.17685 * 22 6 5 40 40 H 1.09000 * 109.46390 * 54.16010 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5087 -0.7472 1.2345 7 6 4.0568 0.5995 1.0283 8 6 5.5769 0.5148 0.8732 9 6 6.1793 -0.1144 2.1324 10 6 5.5563 -1.4959 2.3512 11 1 5.7996 -2.1426 1.5081 12 7 6.0865 -2.0826 3.5892 13 6 7.3604 -2.7710 3.3421 14 6 7.8720 -3.3592 4.6318 15 1 7.3075 -3.2337 5.5439 16 6 9.0613 -4.0565 4.6475 17 7 9.7490 -4.2089 3.5368 18 14 9.6959 -4.7850 6.2463 19 1 8.7042 -5.7549 6.7763 20 1 10.9837 -5.4810 5.9965 21 1 9.9040 -3.6985 7.2371 22 6 4.0367 -1.3529 2.4635 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7211 -1.5952 -1.2328 27 1 1.6587 -1.7422 1.2605 28 1 1.6949 -0.1947 2.1391 29 1 3.6234 1.0340 0.1275 30 1 3.8136 1.2259 1.8866 31 1 5.9850 1.5161 0.7358 32 1 5.8212 -0.0998 0.0067 33 1 5.9690 0.5204 2.9932 34 1 7.2574 -0.2165 2.0086 35 1 6.1880 -1.3810 4.3073 36 1 7.2073 -3.5686 2.6151 37 1 8.0885 -2.0593 2.9528 38 1 10.5855 -4.6998 3.5479 39 1 3.7937 -0.7174 3.3151 40 1 3.5890 -2.3366 2.6050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309061728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:35 Heat of formation + Delta-G solvation = -83.128684 kcal Electronic energy + Delta-G solvation = -17975.845072 eV Core-core repulsion = 15209.707605 eV Total energy + Delta-G solvation = -2766.137467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.49256 -38.43697 -36.53120 -34.73374 -33.50075 -31.82940 -30.74718 -27.83049 -27.24773 -24.49673 -23.76063 -23.24393 -21.74720 -20.83489 -18.58967 -17.57613 -16.87452 -16.79098 -16.49285 -15.99622 -15.74515 -15.32678 -15.21403 -14.67067 -14.44343 -14.26759 -13.85416 -13.54500 -13.46309 -13.12790 -12.95946 -12.74510 -12.66123 -12.57497 -12.23865 -12.12480 -11.87380 -11.69312 -11.54127 -11.37692 -11.21256 -10.76021 -10.65474 -9.23052 -9.05423 -8.22366 -6.34362 1.40869 1.44918 1.52921 2.39568 2.78793 3.10542 3.60920 3.65518 3.86415 3.89443 3.89966 4.04690 4.19965 4.31060 4.35270 4.47355 4.54671 4.61773 4.67815 4.73769 4.76394 4.89226 4.91746 5.00639 5.05355 5.06579 5.18853 5.23797 5.30019 5.35039 5.36750 5.61507 6.00968 6.13642 6.18955 6.45358 6.71907 6.89135 6.95707 7.36706 8.89055 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047466 B = 0.004178 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.753193 B = 6700.289896 C = 6888.974788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 H 0.095 0.905 4 O -0.572 6.572 5 C 0.025 3.975 6 N -0.541 5.541 7 C 0.058 3.942 8 C -0.106 4.106 9 C -0.143 4.143 10 C 0.091 3.909 11 H 0.050 0.950 12 N -0.683 5.683 13 C 0.214 3.786 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.085 3.915 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.385 0.615 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.334 0.666 36 H -0.006 1.006 37 H -0.038 1.038 38 H 0.265 0.735 39 H 0.035 0.965 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 10.661 -5.413 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.113 0.887 4 O -0.378 6.378 5 C -0.103 4.103 6 N -0.266 5.266 7 C -0.070 4.070 8 C -0.145 4.145 9 C -0.182 4.182 10 C -0.019 4.019 11 H 0.068 0.932 12 N -0.313 5.313 13 C 0.086 3.914 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.799 3.201 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.190 1.190 22 C -0.044 4.044 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.233 0.767 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.152 0.848 36 H 0.012 0.988 37 H -0.020 1.020 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.246 10.278 -6.033 20.963 hybrid contribution 0.932 0.053 1.250 1.560 sum -16.314 10.331 -4.783 19.893 Atomic orbital electron populations 1.22415 0.94556 1.03368 1.03219 1.21998 0.93614 0.96255 0.83633 0.88687 1.86548 1.77931 1.29923 1.43435 1.22926 0.86899 1.01989 0.98517 1.61782 1.07138 1.21518 1.36192 1.22154 0.94683 0.89072 1.01059 1.21483 0.95217 1.00995 0.96794 1.22236 0.99333 0.97281 0.99367 1.21496 0.94702 0.93602 0.92142 0.93199 1.60515 1.30020 1.32320 1.08400 1.19151 0.84834 0.91631 0.95751 1.21536 1.06002 1.34585 0.95509 0.91638 1.25988 0.96790 0.96537 1.00461 1.70101 1.15828 1.42498 1.29052 0.85353 0.77366 0.78666 0.78706 1.19258 1.20792 1.18994 1.21793 0.93464 0.99150 0.89963 0.90754 0.91493 0.91439 0.76673 0.90041 0.93476 0.89171 0.94563 0.89935 0.92493 0.91535 0.94200 0.84828 0.98785 1.02044 0.92600 0.94715 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.53 71.98 0.69 -1.39 16 2 C 0.10 1.73 3.00 30.59 0.09 1.82 16 3 H 0.10 1.60 6.27 -2.39 -0.01 1.59 16 4 O -0.57 -11.64 13.18 -148.98 -1.96 -13.61 16 5 C 0.02 0.47 4.79 86.30 0.41 0.89 16 6 N -0.54 -14.02 4.61 -896.36 -4.13 -18.15 16 7 C 0.06 1.37 5.04 86.32 0.43 1.81 16 8 C -0.11 -2.88 6.09 30.64 0.19 -2.70 16 9 C -0.14 -4.73 5.25 30.67 0.16 -4.57 16 10 C 0.09 3.44 2.63 44.97 0.12 3.55 16 11 H 0.05 2.16 7.80 -2.39 -0.02 2.14 16 12 N -0.68 -30.42 6.24 -495.30 -3.09 -33.51 16 13 C 0.21 11.90 5.24 85.56 0.45 12.35 16 14 C -0.54 -31.40 9.32 25.60 0.24 -31.16 16 15 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 18 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 C 0.08 2.59 5.07 86.33 0.44 3.03 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.38 5.70 9.04 -74.06 -0.67 5.03 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.95 5.87 -2.39 -0.01 1.93 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.03 8.10 -2.39 -0.02 2.02 16 34 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 35 H 0.33 14.07 8.44 -89.69 -0.76 13.31 16 36 H -0.01 -0.37 8.06 -2.39 -0.02 -0.39 16 37 H -0.04 -2.27 7.50 -2.39 -0.02 -2.29 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -67.06 315.73 -3.61 -70.67 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.42 Total: 21.05 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.68 Total: -15.88 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -6.93 Total: -109.09 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.96 Total: -13.61 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.06 -3.61 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309061728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.459 kcal (2) G-P(sol) polarization free energy of solvation -67.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds