Wall clock time and date at job start Mon Mar 30 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 N 1.46908 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.46846 * 110.99965 * 45.79194 * 15 14 13 17 17 C 1.53036 * 109.52222 * 185.83982 * 16 15 14 18 18 C 1.53120 * 109.27866 * 300.81875 * 17 16 15 19 19 O 1.42899 * 109.57587 * 177.59297 * 18 17 16 20 20 C 1.53115 * 109.15836 * 57.65361 * 18 17 16 21 21 C 1.46851 * 110.99818 * 169.99779 * 15 14 13 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 1.00903 * 111.00093 * 321.05235 * 12 2 1 27 27 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 28 28 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 29 29 H 1.09000 * 109.47419 * 299.99657 * 14 13 12 30 30 H 1.09002 * 109.47282 * 60.00347 * 14 13 12 31 31 H 1.09003 * 109.45894 * 305.85147 * 16 15 14 32 32 H 1.08998 * 109.46396 * 65.81876 * 16 15 14 33 33 H 1.08997 * 109.50440 * 180.87691 * 17 16 15 34 34 H 1.09000 * 109.50472 * 60.75742 * 17 16 15 35 35 H 1.09001 * 109.52000 * 297.75351 * 18 17 16 36 36 H 0.96698 * 113.99690 * 60.28326 * 19 18 17 37 37 H 1.09002 * 109.50176 * 182.40728 * 20 18 17 38 38 H 1.09004 * 109.50442 * 62.29107 * 20 18 17 39 39 H 1.08999 * 109.46431 * 294.17950 * 21 15 14 40 40 H 1.08998 * 109.45931 * 54.15463 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 7 2.6574 0.3818 -4.7220 16 6 3.2774 1.6582 -4.3444 17 6 3.1939 2.6348 -5.5197 18 6 3.9156 2.0335 -6.7288 19 8 3.7936 2.9154 -7.8466 20 6 3.2820 0.6824 -7.0714 21 6 3.3630 -0.2377 -5.8512 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.4496 -1.4979 -1.4100 27 1 1.0872 0.6163 -2.5525 28 1 2.7589 1.0462 -2.1181 29 1 3.5905 -0.9272 -3.3690 30 1 1.9185 -1.3566 -3.8029 31 1 2.7520 2.0772 -3.4861 32 1 4.3226 1.4915 -4.0842 33 1 3.6679 3.5769 -5.2444 34 1 2.1484 2.8128 -5.7715 35 1 4.9697 1.8915 -6.4903 36 1 4.1746 3.7919 -7.6994 37 1 3.8191 0.2294 -7.9048 38 1 2.2379 0.8296 -7.3476 39 1 4.4079 -0.3956 -5.5840 40 1 2.8998 -1.1956 -6.0874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000321273416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:25 Heat of formation + Delta-G solvation = -44.141435 kcal Electronic energy + Delta-G solvation = -17882.246252 eV Core-core repulsion = 15117.799399 eV Total energy + Delta-G solvation = -2764.446853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.52159 -37.11719 -35.96786 -33.09903 -31.88172 -31.11282 -29.73232 -26.45268 -25.05779 -23.92387 -23.17752 -20.91974 -20.22948 -19.92197 -17.54800 -16.68701 -16.24753 -15.27992 -15.14786 -14.86671 -14.70135 -14.26276 -13.92824 -13.48164 -13.13110 -13.04344 -12.60314 -12.36713 -12.23720 -11.81381 -11.67408 -11.61716 -11.38255 -11.19707 -10.96909 -10.74616 -10.50601 -10.35362 -10.12068 -9.93647 -9.50363 -9.15775 -8.57061 -8.34214 -7.44436 -6.04740 -4.02141 3.25452 3.35080 3.37970 3.76566 3.95562 4.40191 4.56434 4.58969 4.91539 4.93976 5.12931 5.21059 5.25723 5.30152 5.30481 5.42109 5.54994 5.57924 5.67560 5.73782 5.82965 5.91740 5.95227 6.09468 6.17984 6.21849 6.25705 6.34576 6.51443 6.74216 7.01489 7.05229 7.13038 7.38129 7.70698 7.90065 8.31257 8.69323 9.06383 9.57939 11.08860 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044322 B = 0.004319 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.588620 B = 6480.889285 C = 6752.662495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.184 3.816 3 H 0.032 0.968 4 C -0.499 4.499 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.054 3.946 14 C 0.058 3.942 15 N -0.539 5.539 16 C 0.049 3.951 17 C -0.148 4.148 18 C 0.102 3.898 19 O -0.569 6.569 20 C -0.108 4.108 21 C 0.059 3.941 22 H 0.054 0.946 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.331 0.669 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.376 0.624 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 5.860 -19.720 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.075 3.925 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.303 5.303 13 C -0.076 4.076 14 C -0.069 4.069 15 N -0.265 5.265 16 C -0.079 4.079 17 C -0.186 4.186 18 C 0.044 3.956 19 O -0.375 6.375 20 C -0.146 4.146 21 C -0.070 4.070 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.223 0.777 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.963 5.508 -19.756 20.603 hybrid contribution -0.533 1.255 0.644 1.508 sum 1.429 6.763 -19.112 20.324 Atomic orbital electron populations 1.22848 1.01437 1.00929 0.98882 1.19623 0.88609 0.95001 0.89261 0.95001 1.20993 1.31203 1.13756 0.87768 0.90061 1.24944 0.95992 0.96633 0.95871 1.69885 1.45947 1.40362 0.97832 0.86883 0.80615 0.83921 0.76822 1.20750 1.22427 1.19556 1.60599 1.58008 1.08898 1.02768 1.22075 0.99101 0.96086 0.90335 1.22093 1.00732 0.94983 0.89115 1.61996 1.52894 1.04341 1.07241 1.22162 0.97721 0.90210 0.97776 1.22327 1.02576 0.98317 0.95417 1.21890 0.97778 0.90438 0.85538 1.86507 1.83841 1.27286 1.39831 1.21527 1.02413 0.93246 0.97423 1.22031 0.96687 0.97545 0.90694 0.92689 0.95426 0.93692 0.92691 0.85200 0.95431 0.91444 0.93765 0.90825 0.89386 0.94618 0.91428 0.90256 0.93097 0.77685 0.91025 0.90333 0.94683 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.64 37.16 0.32 -3.62 16 2 C 0.18 4.34 2.16 -68.87 -0.15 4.19 16 3 H 0.03 0.79 6.86 -51.93 -0.36 0.43 16 4 C -0.50 -14.12 9.42 -34.44 -0.32 -14.44 16 5 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.89 22.01 24.37 -169.99 -4.14 17.87 16 9 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 12 N -0.67 -13.54 6.23 -107.95 -0.67 -14.21 16 13 C 0.05 0.90 4.73 -3.82 -0.02 0.88 16 14 C 0.06 0.81 5.53 -3.82 -0.02 0.79 16 15 N -0.54 -6.70 4.81 -234.66 -1.13 -7.83 16 16 C 0.05 0.58 4.85 -3.83 -0.02 0.56 16 17 C -0.15 -1.47 5.72 -26.65 -0.15 -1.62 16 18 C 0.10 0.99 3.54 -26.61 -0.09 0.89 16 19 O -0.57 -5.47 13.33 -35.23 -0.47 -5.94 16 20 C -0.11 -1.08 5.75 -26.65 -0.15 -1.23 16 21 C 0.06 0.62 5.42 -3.83 -0.02 0.60 16 22 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 23 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 24 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.33 6.25 8.47 -39.29 -0.33 5.91 16 27 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 28 H 0.07 1.15 6.12 -51.93 -0.32 0.83 16 29 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.12 5.81 -51.93 -0.30 0.81 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.05 9.09 45.56 0.41 2.47 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -31.24 304.77 -7.86 -39.10 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.09 Total: 4.54 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.73 Total: -11.17 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -1.03 Total: -48.99 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.47 Total: -5.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.24 -7.86 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321273416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.041 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds