Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 2 15 15 N 1.46908 * 109.46840 * 179.97438 * 14 13 12 16 16 C 1.46846 * 110.99965 * 45.79194 * 15 14 13 17 17 C 1.53036 * 109.52222 * 185.83982 * 16 15 14 18 18 C 1.53120 * 109.27866 * 300.81875 * 17 16 15 19 19 O 1.42899 * 109.57587 * 177.59297 * 18 17 16 20 20 C 1.53115 * 109.15836 * 57.65361 * 18 17 16 21 21 C 1.46851 * 110.99818 * 169.99779 * 15 14 13 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 1.00903 * 111.00093 * 321.05235 * 12 2 1 27 27 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 28 28 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 29 29 H 1.09000 * 109.47419 * 299.99657 * 14 13 12 30 30 H 1.09002 * 109.47282 * 60.00347 * 14 13 12 31 31 H 1.09003 * 109.45894 * 305.85147 * 16 15 14 32 32 H 1.08998 * 109.46396 * 65.81876 * 16 15 14 33 33 H 1.08997 * 109.50440 * 180.87691 * 17 16 15 34 34 H 1.09000 * 109.50472 * 60.75742 * 17 16 15 35 35 H 1.09001 * 109.52000 * 297.75351 * 18 17 16 36 36 H 0.96698 * 113.99690 * 60.28326 * 19 18 17 37 37 H 1.09002 * 109.50176 * 182.40728 * 20 18 17 38 38 H 1.09004 * 109.50442 * 62.29107 * 20 18 17 39 39 H 1.08999 * 109.46431 * 294.17950 * 21 15 14 40 40 H 1.08998 * 109.45931 * 54.15463 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5952 -0.5332 -3.5744 15 7 2.6574 0.3818 -4.7220 16 6 3.2774 1.6582 -4.3444 17 6 3.1939 2.6348 -5.5197 18 6 3.9156 2.0335 -6.7288 19 8 3.7936 2.9154 -7.8466 20 6 3.2820 0.6824 -7.0714 21 6 3.3630 -0.2377 -5.8512 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.4496 -1.4979 -1.4100 27 1 1.0872 0.6163 -2.5525 28 1 2.7589 1.0462 -2.1181 29 1 3.5905 -0.9272 -3.3690 30 1 1.9185 -1.3566 -3.8029 31 1 2.7520 2.0772 -3.4861 32 1 4.3226 1.4915 -4.0842 33 1 3.6679 3.5769 -5.2444 34 1 2.1484 2.8128 -5.7715 35 1 4.9697 1.8915 -6.4903 36 1 4.1746 3.7919 -7.6994 37 1 3.8191 0.2294 -7.9048 38 1 2.2379 0.8296 -7.3476 39 1 4.4079 -0.3956 -5.5840 40 1 2.8998 -1.1956 -6.0874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321273416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = -70.782211 kcal Electronic energy + Delta-G solvation = -17883.401483 eV Core-core repulsion = 15117.799399 eV Total energy + Delta-G solvation = -2765.602084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.41103 -38.34091 -37.22779 -34.74729 -33.38997 -31.95670 -31.22660 -27.74466 -27.08994 -24.94007 -24.06394 -22.15493 -21.99136 -20.78392 -18.76435 -18.27405 -17.31457 -16.85652 -16.45839 -16.13971 -15.58281 -15.40952 -15.17572 -14.87004 -14.56097 -14.40553 -14.03798 -13.81342 -13.42163 -13.21860 -13.07743 -12.69920 -12.64474 -12.28902 -12.21993 -12.02565 -11.96630 -11.86416 -11.46049 -11.26806 -11.17434 -10.76187 -10.72249 -9.32173 -9.05926 -8.27421 -6.30119 1.29905 1.35188 1.45438 2.32021 2.77091 3.06679 3.27955 3.60838 3.76459 3.84137 4.06405 4.14058 4.21070 4.27500 4.37893 4.44644 4.52598 4.54566 4.59432 4.64068 4.69002 4.79597 4.87655 4.88595 4.91808 5.01211 5.07177 5.09219 5.15638 5.33433 5.37218 5.66211 5.95819 6.06933 6.12434 6.67013 6.73563 6.77948 6.87220 7.35109 8.90051 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044322 B = 0.004319 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.588620 B = 6480.889285 C = 6752.662495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.189 3.811 3 H 0.026 0.974 4 C -0.506 4.506 5 H 0.035 0.965 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.251 1.251 12 N -0.685 5.685 13 C 0.061 3.939 14 C 0.069 3.931 15 N -0.544 5.544 16 C 0.047 3.953 17 C -0.141 4.141 18 C 0.104 3.896 19 O -0.582 6.582 20 C -0.106 4.106 21 C 0.059 3.941 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.265 0.735 26 H 0.338 0.662 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.394 0.606 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 7.372 -21.578 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.079 3.921 3 H 0.044 0.956 4 C -0.544 4.544 5 H 0.054 0.946 6 C -0.188 4.188 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.175 1.175 12 N -0.316 5.316 13 C -0.069 4.069 14 C -0.059 4.059 15 N -0.270 5.270 16 C -0.081 4.081 17 C -0.179 4.179 18 C 0.045 3.955 19 O -0.391 6.391 20 C -0.144 4.144 21 C -0.069 4.069 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.131 7.029 -21.656 22.796 hybrid contribution -0.179 0.722 1.161 1.379 sum 0.952 7.750 -20.495 21.932 Atomic orbital electron populations 1.22707 0.99364 1.01504 0.99903 1.19387 0.90070 0.93996 0.88667 0.95565 1.21288 1.30347 1.12581 0.90224 0.94619 1.25816 0.97558 1.00080 0.95351 1.70047 1.47985 1.42617 0.98554 0.85796 0.79056 0.79908 0.77198 1.19257 1.22604 1.17516 1.60420 1.58223 1.09728 1.03194 1.22053 0.99351 0.95518 0.89935 1.21918 1.00234 0.95076 0.88676 1.62029 1.53635 1.04365 1.06941 1.22187 0.97315 0.90309 0.98301 1.22267 1.02212 0.98600 0.94787 1.21847 0.98012 0.90276 0.85360 1.86469 1.84226 1.28557 1.39819 1.21503 1.01966 0.93592 0.97345 1.22082 0.96668 0.97987 0.90143 0.92479 0.92279 0.94580 0.92572 0.84430 0.94933 0.91985 0.94644 0.90055 0.90458 0.94815 0.89644 0.91292 0.92368 0.75651 0.89995 0.91387 0.94442 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.16 8.64 71.98 0.62 -6.54 16 2 C 0.19 8.70 2.16 44.17 0.10 8.79 16 3 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 4 C -0.51 -29.15 9.42 25.60 0.24 -28.90 16 5 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 6 C 0.01 0.51 5.45 84.65 0.46 0.97 16 7 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 8 Si 0.95 44.91 24.37 68.60 1.67 46.58 16 9 H -0.27 -11.90 6.87 99.48 0.68 -11.22 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.25 -10.95 6.53 99.48 0.65 -10.30 16 12 N -0.68 -27.02 6.23 -495.46 -3.09 -30.10 16 13 C 0.06 1.92 4.73 86.30 0.41 2.33 16 14 C 0.07 1.81 5.53 86.30 0.48 2.29 16 15 N -0.54 -12.57 4.81 -896.34 -4.31 -16.88 16 16 C 0.05 1.02 4.85 86.33 0.42 1.44 16 17 C -0.14 -2.49 5.72 30.65 0.18 -2.31 16 18 C 0.10 1.77 3.54 30.67 0.11 1.88 16 19 O -0.58 -9.83 13.33 -148.98 -1.99 -11.81 16 20 C -0.11 -1.90 5.75 30.64 0.18 -1.73 16 21 C 0.06 1.13 5.42 86.32 0.47 1.60 16 22 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 23 H 0.06 2.03 7.45 -2.39 -0.02 2.01 16 24 H 0.04 1.53 3.27 -2.38 -0.01 1.52 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.34 12.44 8.47 -89.69 -0.76 11.68 16 27 H 0.03 1.01 7.44 -2.39 -0.02 0.99 16 28 H 0.06 2.03 6.12 -2.39 -0.01 2.02 16 29 H 0.04 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 1.85 5.81 -2.39 -0.01 1.83 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.39 3.30 9.09 -74.06 -0.67 2.63 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -67.35 304.77 -4.25 -71.60 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.49 Total: 20.47 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 3.65 Total: -20.18 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -7.10 Total: -106.65 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.99 Total: -11.81 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -67.35 -4.25 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321273416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.816 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds