Wall clock time and date at job start Mon Mar 30 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.50700 * 109.47140 * 239.99343 * 2 1 3 5 5 H 1.07996 * 120.00377 * 240.00323 * 4 2 1 6 6 C 1.37881 * 119.99495 * 60.00948 * 4 2 1 7 7 N 1.31510 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47301 * 119.99742 * 8 6 4 11 11 H 1.48496 * 109.47382 * 239.99626 * 8 6 4 12 12 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 13 13 C 1.46901 * 110.99793 * 274.99642 * 12 2 1 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 2 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00222 * 294.21135 * 15 14 13 17 17 C 1.53034 * 109.52552 * 174.16216 * 16 15 14 18 18 C 1.53123 * 109.28182 * 59.17780 * 17 16 15 19 19 O 1.42892 * 109.52816 * 182.44226 * 18 17 16 20 20 C 1.53120 * 109.16070 * 302.35293 * 18 17 16 21 21 C 1.46849 * 110.99649 * 169.99929 * 15 14 13 22 22 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 23 23 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 24 24 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 25 25 H 0.97005 * 120.00592 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99995 * 151.04565 * 12 2 1 27 27 H 1.09001 * 109.46874 * 60.00179 * 13 12 2 28 28 H 1.08992 * 109.47407 * 300.00197 * 13 12 2 29 29 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 30 30 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 31 31 H 1.09006 * 109.46266 * 294.17473 * 16 15 14 32 32 H 1.09002 * 109.46276 * 54.14664 * 16 15 14 33 33 H 1.09006 * 109.50444 * 299.24199 * 17 16 15 34 34 H 1.09003 * 109.50687 * 179.12283 * 17 16 15 35 35 H 1.08999 * 109.57140 * 62.27961 * 18 17 16 36 36 H 0.96705 * 113.99966 * 299.68470 * 19 18 17 37 37 H 1.09005 * 109.50142 * 297.71204 * 20 18 17 38 38 H 1.08998 * 109.50777 * 177.59101 * 20 18 17 39 39 H 1.08991 * 109.46839 * 305.85721 * 21 15 14 40 40 H 1.09005 * 109.46224 * 65.84006 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1483 -2.2859 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5332 3.5745 15 7 2.6571 0.3818 4.7221 16 6 3.6626 1.4298 4.5056 17 6 3.5987 2.4441 5.6498 18 6 3.8600 1.7264 6.9769 19 8 3.7455 2.6579 8.0544 20 6 2.8290 0.6084 7.1552 21 6 2.9152 -0.3526 5.9673 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7090 1.1613 -3.4845 26 1 2.9172 -1.1206 1.0289 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0461 2.1183 29 1 1.9181 -1.3566 3.8030 30 1 3.5902 -0.9273 3.3692 31 1 4.6550 0.9801 4.4740 32 1 3.4628 1.9352 3.5607 33 1 2.6108 2.9043 5.6734 34 1 4.3556 3.2134 5.4969 35 1 4.8628 1.2992 6.9697 36 1 4.3702 3.3944 8.0056 37 1 1.8291 1.0397 7.2024 38 1 3.0360 0.0661 8.0777 39 1 2.1726 -1.1419 6.0840 40 1 3.9112 -0.7939 5.9289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000321273419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:29 Heat of formation + Delta-G solvation = -56.711522 kcal Electronic energy + Delta-G solvation = -17759.081603 eV Core-core repulsion = 14994.089670 eV Total energy + Delta-G solvation = -2764.991933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42836 -36.93524 -35.67029 -33.09477 -31.73864 -31.04047 -29.07188 -26.27268 -25.12035 -23.58020 -23.16660 -20.92745 -19.97559 -19.72578 -17.51586 -16.48251 -16.11541 -15.37631 -14.84651 -14.73604 -14.46018 -14.13765 -14.00946 -13.38161 -13.07447 -12.79814 -12.33640 -12.31905 -11.86611 -11.64464 -11.34605 -11.20914 -11.06799 -10.96720 -10.75425 -10.62629 -10.49333 -10.19584 -10.10824 -9.95560 -9.85047 -8.80327 -8.47978 -8.29689 -7.25560 -6.02616 -4.09182 3.28173 3.36032 3.40054 3.81939 3.98897 4.40432 4.60833 4.62877 4.94041 5.01801 5.17701 5.28195 5.32764 5.35767 5.38327 5.56501 5.58834 5.68832 5.72192 5.81251 5.89971 5.98598 6.05308 6.15656 6.41361 6.50022 6.92217 7.11056 7.13583 7.17580 7.27231 7.40998 7.52853 7.78418 7.91251 8.28614 8.39363 8.68128 9.01847 9.56812 11.03721 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.050832 B = 0.003872 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.698463 B = 7229.088907 C = 7295.740816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.689 5.689 13 C 0.065 3.935 14 C 0.060 3.940 15 N -0.538 5.538 16 C 0.053 3.947 17 C -0.148 4.148 18 C 0.103 3.897 19 O -0.569 6.569 20 C -0.109 4.109 21 C 0.059 3.941 22 H 0.005 0.995 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.376 0.624 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 1.684 16.923 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.321 5.321 13 C -0.065 4.065 14 C -0.067 4.067 15 N -0.263 5.263 16 C -0.075 4.075 17 C -0.186 4.186 18 C 0.044 3.956 19 O -0.374 6.374 20 C -0.147 4.147 21 C -0.069 4.069 22 H 0.024 0.976 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.223 0.777 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.790 1.361 17.165 17.873 hybrid contribution 2.322 0.153 -1.444 2.739 sum 7.112 1.514 15.721 17.321 Atomic orbital electron populations 1.21706 0.97814 0.99328 0.99392 1.19095 0.92692 0.92248 0.85459 0.98235 1.21311 1.31408 1.12481 0.90489 0.92196 1.24928 0.95061 0.95010 0.99060 1.69911 1.36653 1.22924 1.23343 0.86469 0.78617 0.79592 0.82876 1.19772 1.20941 1.21120 1.60673 1.31838 1.33378 1.06175 1.21876 1.00389 0.93845 0.90374 1.22113 0.99589 0.94991 0.90047 1.61861 1.48085 1.13861 1.02536 1.22094 0.93022 0.93258 0.99091 1.22320 1.03368 0.98236 0.94692 1.21885 0.98117 0.89821 0.85752 1.86512 1.63142 1.39497 1.48274 1.21539 1.00091 0.95411 0.97629 1.22027 0.99943 0.95715 0.89190 0.97600 0.90153 0.94993 0.92980 0.85571 0.91030 0.96490 0.90014 0.95301 0.95072 0.89666 0.90069 0.91495 0.93236 0.77721 0.90199 0.91067 0.89950 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.40 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.69 -14.86 6.30 -107.95 -0.68 -15.54 16 13 C 0.07 1.20 5.41 -3.82 -0.02 1.18 16 14 C 0.06 0.90 5.22 -3.82 -0.02 0.88 16 15 N -0.54 -7.14 4.66 -234.67 -1.09 -8.23 16 16 C 0.05 0.65 5.29 -3.84 -0.02 0.63 16 17 C -0.15 -1.53 5.72 -26.65 -0.15 -1.69 16 18 C 0.10 1.03 3.54 -26.61 -0.09 0.93 16 19 O -0.57 -5.66 13.32 -35.23 -0.47 -6.12 16 20 C -0.11 -1.14 5.75 -26.65 -0.15 -1.29 16 21 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 22 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.33 6.84 8.22 -39.29 -0.32 6.52 16 27 H 0.07 1.40 7.44 -51.93 -0.39 1.02 16 28 H 0.02 0.32 6.34 -51.93 -0.33 -0.01 16 29 H 0.08 1.22 7.99 -51.93 -0.41 0.81 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.15 6.21 -51.93 -0.32 0.82 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.15 9.09 45.56 0.41 2.56 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -29.81 312.35 -8.86 -38.67 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.22 Total: 4.49 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.71 Total: -9.27 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -1.15 Total: -48.75 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.47 Total: -6.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.81 -8.86 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321273419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.040 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds