Wall clock time and date at job start Mon Mar 30 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47210 * 2 1 4 4 C 1.50700 * 109.47140 * 239.99343 * 2 1 3 5 5 H 1.07996 * 120.00377 * 240.00323 * 4 2 1 6 6 C 1.37881 * 119.99495 * 60.00948 * 4 2 1 7 7 N 1.31510 * 120.00323 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47301 * 119.99742 * 8 6 4 11 11 H 1.48496 * 109.47382 * 239.99626 * 8 6 4 12 12 N 1.46906 * 109.46736 * 120.00001 * 2 1 3 13 13 C 1.46901 * 110.99793 * 274.99642 * 12 2 1 14 14 C 1.53000 * 109.46769 * 179.97438 * 13 12 2 15 15 N 1.46901 * 109.46769 * 180.02562 * 14 13 12 16 16 C 1.46839 * 111.00222 * 294.21135 * 15 14 13 17 17 C 1.53034 * 109.52552 * 174.16216 * 16 15 14 18 18 C 1.53123 * 109.28182 * 59.17780 * 17 16 15 19 19 O 1.42892 * 109.52816 * 182.44226 * 18 17 16 20 20 C 1.53120 * 109.16070 * 302.35293 * 18 17 16 21 21 C 1.46849 * 110.99649 * 169.99929 * 15 14 13 22 22 H 1.09000 * 109.47326 * 300.00424 * 1 2 3 23 23 H 1.09001 * 109.46846 * 60.00014 * 1 2 3 24 24 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 25 25 H 0.97005 * 120.00592 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99995 * 151.04565 * 12 2 1 27 27 H 1.09001 * 109.46874 * 60.00179 * 13 12 2 28 28 H 1.08992 * 109.47407 * 300.00197 * 13 12 2 29 29 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 30 30 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 31 31 H 1.09006 * 109.46266 * 294.17473 * 16 15 14 32 32 H 1.09002 * 109.46276 * 54.14664 * 16 15 14 33 33 H 1.09006 * 109.50444 * 299.24199 * 17 16 15 34 34 H 1.09003 * 109.50687 * 179.12283 * 17 16 15 35 35 H 1.08999 * 109.57140 * 62.27961 * 18 17 16 36 36 H 0.96705 * 113.99966 * 299.68470 * 19 18 17 37 37 H 1.09005 * 109.50142 * 297.71204 * 20 18 17 38 38 H 1.08998 * 109.50777 * 177.59101 * 20 18 17 39 39 H 1.08991 * 109.46839 * 305.85721 * 21 15 14 40 40 H 1.09005 * 109.46224 * 65.84006 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1483 -2.2859 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5332 3.5745 15 7 2.6571 0.3818 4.7221 16 6 3.6626 1.4298 4.5056 17 6 3.5987 2.4441 5.6498 18 6 3.8600 1.7264 6.9769 19 8 3.7455 2.6579 8.0544 20 6 2.8290 0.6084 7.1552 21 6 2.9152 -0.3526 5.9673 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7090 1.1613 -3.4845 26 1 2.9172 -1.1206 1.0289 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0461 2.1183 29 1 1.9181 -1.3566 3.8030 30 1 3.5902 -0.9273 3.3692 31 1 4.6550 0.9801 4.4740 32 1 3.4628 1.9352 3.5607 33 1 2.6108 2.9043 5.6734 34 1 4.3556 3.2134 5.4969 35 1 4.8628 1.2992 6.9697 36 1 4.3702 3.3944 8.0056 37 1 1.8291 1.0397 7.2024 38 1 3.0360 0.0661 8.0777 39 1 2.1726 -1.1419 6.0840 40 1 3.9112 -0.7939 5.9289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321273419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:28 Heat of formation + Delta-G solvation = -80.131678 kcal Electronic energy + Delta-G solvation = -17760.097177 eV Core-core repulsion = 14994.089670 eV Total energy + Delta-G solvation = -2766.007507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35852 -38.15353 -37.13642 -34.78926 -33.12886 -31.92148 -30.75640 -27.84667 -27.12855 -24.65621 -24.11918 -22.26301 -21.69870 -20.82117 -18.52045 -18.26594 -17.21816 -16.85216 -16.46342 -15.76076 -15.62710 -15.44891 -15.22825 -14.77068 -14.57691 -14.11435 -13.77730 -13.49060 -13.19554 -12.93228 -12.90044 -12.62002 -12.54340 -12.33904 -12.22950 -12.20680 -12.11772 -11.83653 -11.66996 -11.29323 -10.88988 -10.76537 -10.58174 -9.33299 -9.06484 -8.14068 -6.28817 1.41603 1.43348 1.55301 2.40848 2.78107 3.14670 3.27966 3.68959 3.77192 3.88344 4.08179 4.16731 4.18875 4.28566 4.39825 4.50603 4.56399 4.62692 4.78120 4.80101 4.86858 4.91141 5.01685 5.04671 5.07400 5.08270 5.15092 5.21868 5.33430 5.46581 5.66198 5.83647 6.06867 6.14094 6.20761 6.45137 6.75916 6.87642 6.99159 7.41886 8.92031 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.050832 B = 0.003872 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.698463 B = 7229.088907 C = 7295.740816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.033 1.033 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.071 3.929 14 C 0.075 3.925 15 N -0.551 5.551 16 C 0.052 3.948 17 C -0.142 4.142 18 C 0.106 3.894 19 O -0.583 6.583 20 C -0.108 4.108 21 C 0.061 3.939 22 H 0.019 0.981 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.056 0.944 28 H 0.012 0.988 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.659 0.907 17.717 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.015 1.015 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.317 5.317 13 C -0.059 4.059 14 C -0.053 4.053 15 N -0.277 5.277 16 C -0.076 4.076 17 C -0.180 4.180 18 C 0.047 3.953 19 O -0.391 6.391 20 C -0.146 4.146 21 C -0.067 4.067 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.032 0.592 17.988 18.981 hybrid contribution 1.935 0.455 -1.627 2.569 sum 7.968 1.047 16.361 18.228 Atomic orbital electron populations 1.21537 0.97785 0.98885 0.98919 1.18909 0.92739 0.90691 0.86915 1.01521 1.21625 1.31749 1.12742 0.91531 0.92047 1.25772 0.95133 0.95677 1.02171 1.70039 1.37463 1.24137 1.24166 0.85397 0.78111 0.78582 0.78854 1.18914 1.20587 1.20606 1.60568 1.32166 1.33495 1.05449 1.21831 0.99620 0.93660 0.90743 1.21858 0.99717 0.94621 0.89138 1.61821 1.49054 1.14048 1.02731 1.22098 0.93097 0.93330 0.99030 1.22271 1.03100 0.98164 0.94434 1.21834 0.98488 0.89654 0.85281 1.86474 1.64194 1.40343 1.48106 1.21525 0.99507 0.95672 0.97866 1.22069 1.00698 0.95806 0.88089 0.96218 0.92440 0.95211 0.92809 0.85022 0.92578 0.97018 0.89872 0.94546 0.94187 0.91550 0.91769 0.89516 0.91884 0.75629 0.91782 0.89747 0.89465 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 9.19 71.98 0.66 -5.17 16 2 C 0.22 11.30 2.60 44.17 0.11 11.41 16 3 H -0.03 -1.90 7.80 -2.39 -0.02 -1.91 16 4 C -0.54 -29.85 8.59 25.60 0.22 -29.63 16 5 H 0.06 3.31 7.62 -2.91 -0.02 3.29 16 6 C 0.01 0.65 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 8 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.69 -29.55 6.30 -495.45 -3.12 -32.67 16 13 C 0.07 2.62 5.41 86.30 0.47 3.09 16 14 C 0.07 2.14 5.22 86.30 0.45 2.59 16 15 N -0.55 -13.99 4.66 -896.36 -4.17 -18.16 16 16 C 0.05 1.22 5.29 86.33 0.46 1.68 16 17 C -0.14 -2.73 5.72 30.65 0.18 -2.55 16 18 C 0.11 1.88 3.54 30.68 0.11 1.99 16 19 O -0.58 -10.33 13.32 -148.98 -1.99 -12.32 16 20 C -0.11 -2.06 5.75 30.65 0.18 -1.88 16 21 C 0.06 1.23 5.46 86.33 0.47 1.70 16 22 H 0.02 0.91 7.45 -2.39 -0.02 0.89 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 26 H 0.33 13.75 8.22 -89.70 -0.74 13.02 16 27 H 0.06 2.22 7.44 -2.39 -0.02 2.21 16 28 H 0.01 0.45 6.34 -2.39 -0.02 0.43 16 29 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 30 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 32 H 0.07 1.78 6.21 -2.39 -0.01 1.77 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.39 3.56 9.09 -74.05 -0.67 2.89 16 37 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.67 8.01 -2.39 -0.02 1.65 16 40 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -63.03 312.35 -3.66 -66.68 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.39 Total: 19.88 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.75 Total: -15.68 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -7.05 Total: -104.06 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.99 Total: -12.32 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.03 -3.66 -66.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321273419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.448 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds