Wall clock time and date at job start Mon Mar 30 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50567 * 2 1 4 4 C 1.53051 * 109.49099 * 239.94949 * 2 1 3 5 5 N 1.46950 * 109.36493 * 181.62919 * 4 2 1 6 6 C 1.46904 * 111.00083 * 183.18686 * 5 4 2 7 7 C 1.46958 * 110.88177 * 59.32141 * 5 4 2 8 8 C 1.53051 * 109.36287 * 300.67981 * 7 5 4 9 9 N 1.46953 * 109.36856 * 58.39599 * 8 7 5 10 10 C 1.46895 * 111.00455 * 176.80840 * 9 8 7 11 11 C 1.53009 * 109.46510 * 63.72175 * 10 9 8 12 12 O 1.42901 * 109.47265 * 68.40470 * 11 10 9 13 13 C 1.42896 * 114.00142 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46941 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99489 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46960 * 90.00001 * 18 16 14 20 20 H 1.48500 * 109.47302 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.47196 * 330.00333 * 18 16 14 22 22 H 1.08998 * 109.46962 * 299.94240 * 1 2 3 23 23 H 1.09003 * 109.47340 * 59.94009 * 1 2 3 24 24 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.49100 * 61.66216 * 4 2 1 26 26 H 1.09003 * 109.48554 * 301.59949 * 4 2 1 27 27 H 1.09003 * 109.46683 * 292.24803 * 6 5 4 28 28 H 1.09002 * 109.47079 * 52.24686 * 6 5 4 29 29 H 1.08993 * 109.47089 * 172.24797 * 6 5 4 30 30 H 1.09000 * 109.49280 * 180.71013 * 7 5 4 31 31 H 1.09001 * 109.48730 * 60.64215 * 7 5 4 32 32 H 1.09003 * 109.48554 * 298.42996 * 8 7 5 33 33 H 1.09001 * 109.49100 * 178.36729 * 8 7 5 34 34 H 1.08998 * 109.47593 * 303.72759 * 10 9 8 35 35 H 1.09000 * 109.47301 * 183.71708 * 10 9 8 36 36 H 1.08993 * 109.46950 * 308.40172 * 11 10 9 37 37 H 1.09000 * 109.46822 * 188.40205 * 11 10 9 38 38 H 1.09002 * 109.47372 * 59.99415 * 13 12 11 39 39 H 1.09007 * 109.47045 * 299.99700 * 13 12 11 40 40 H 0.97008 * 120.00036 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5096 -0.7551 -1.2265 6 6 4.0411 -1.3749 -2.4477 7 6 4.0000 -1.4490 -0.0274 8 6 3.4893 -0.7265 1.2214 9 7 2.0203 -0.6938 1.1991 10 6 1.4888 -0.0740 2.4203 11 6 1.9341 1.3884 2.4852 12 8 1.2821 2.1312 1.4531 13 6 1.6308 3.5166 1.4251 14 6 0.8899 4.1985 0.3039 15 1 0.2194 3.6308 -0.3241 16 6 1.0672 5.5475 0.0807 17 7 1.8826 6.2392 0.8464 18 14 0.1494 6.3927 -1.3096 19 1 -1.1526 6.9000 -0.8066 20 1 0.9594 7.5281 -1.8194 21 1 -0.0886 5.4219 -2.4078 22 1 -0.3633 0.5129 0.8905 23 1 -0.3634 0.5148 -0.8895 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7022 -0.1928 -2.1394 26 1 1.6544 -1.7417 -1.2628 27 1 3.7846 -2.4343 -2.4586 28 1 3.6079 -0.8872 -3.3209 29 1 5.1251 -1.2633 -2.4696 30 1 5.0900 -1.4490 -0.0274 31 1 3.6360 -2.4764 -0.0275 32 1 3.8756 0.2927 1.2353 33 1 3.8278 -1.2561 2.1120 34 1 1.8662 -0.6077 3.2925 35 1 0.4000 -0.1221 2.4078 36 1 3.0137 1.4459 2.3476 37 1 1.6688 1.8061 3.4564 38 1 2.7043 3.6180 1.2653 39 1 1.3596 3.9788 2.3743 40 1 2.0070 7.1884 0.6895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338993700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:25 Heat of formation + Delta-G solvation = -33.681133 kcal Electronic energy + Delta-G solvation = -18863.282918 eV Core-core repulsion = 16099.289658 eV Total energy + Delta-G solvation = -2763.993260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50505 -36.91449 -35.02083 -32.66963 -32.12631 -29.98266 -27.45201 -26.63984 -26.19414 -23.71270 -22.46378 -21.86493 -21.15906 -18.92625 -16.38763 -16.08940 -15.90181 -15.16750 -14.93590 -14.85775 -14.48096 -14.23399 -13.83372 -13.48112 -12.79492 -12.49742 -12.23604 -12.14933 -11.81092 -11.65452 -11.51944 -11.38521 -11.11456 -10.84470 -10.79904 -10.74515 -10.47657 -10.44741 -10.08781 -10.05407 -9.09551 -8.78118 -8.21169 -8.17766 -7.69698 -6.09718 -4.11160 3.30609 3.35820 3.40845 4.08353 4.22592 4.36785 4.90511 5.08217 5.16592 5.27103 5.30115 5.42790 5.55478 5.60771 5.64517 5.67761 5.76640 5.82464 5.89339 5.92502 6.02065 6.05530 6.15191 6.16672 6.20236 6.37022 6.49663 6.80032 6.93131 7.11491 7.16441 7.19044 7.43510 7.49599 7.54050 7.79935 8.16193 8.56403 9.01555 9.53568 11.01881 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.006825 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.430485 B = 4101.660772 C = 4570.385311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.099 0.901 4 C 0.064 3.936 5 N -0.544 5.544 6 C 0.028 3.972 7 C 0.062 3.938 8 C 0.050 3.950 9 N -0.533 5.533 10 C 0.056 3.944 11 C 0.023 3.977 12 O -0.382 6.382 13 C 0.193 3.807 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -15.047 -0.959 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.035 4.035 3 H 0.116 0.884 4 C -0.064 4.064 5 N -0.268 5.268 6 C -0.121 4.121 7 C -0.067 4.067 8 C -0.078 4.078 9 N -0.258 5.258 10 C -0.073 4.073 11 C -0.056 4.056 12 O -0.302 6.302 13 C 0.119 3.881 14 C -0.548 4.548 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.733 3.267 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.413 -14.952 -1.084 15.185 hybrid contribution -0.093 0.758 -0.419 0.871 sum 2.321 -14.194 -1.503 14.461 Atomic orbital electron populations 1.21698 0.94239 1.00060 1.02930 1.21964 0.95438 0.98805 0.87262 0.88392 1.22281 0.86274 0.98880 0.98984 1.62089 1.09358 1.53342 1.02041 1.22323 1.00514 0.96474 0.92775 1.22109 0.99167 0.95512 0.89868 1.22158 0.88733 1.00000 0.96919 1.62435 1.07393 1.53256 1.02710 1.22300 1.01512 0.91119 0.92328 1.23003 0.96656 0.93446 0.92476 1.87945 1.68217 1.23483 1.50572 1.20179 0.95223 0.75868 0.96809 1.21018 1.26009 0.93291 1.14524 0.91565 1.24940 0.95553 0.97075 0.96905 1.69964 1.36646 1.08215 1.38993 0.86375 0.79449 0.78986 0.81925 1.20527 1.21131 1.19599 0.91085 0.92615 0.93950 0.90618 0.95040 0.96070 0.91467 0.91638 0.90849 0.94572 0.93347 0.90909 0.90504 0.89660 0.94394 0.94384 0.97971 0.97998 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.43 37.16 0.31 -1.85 16 2 C 0.07 1.26 1.92 -67.66 -0.13 1.13 16 3 H 0.10 2.12 5.53 -51.92 -0.29 1.83 16 4 C 0.06 0.99 4.90 -3.77 -0.02 0.97 16 5 N -0.54 -8.12 4.97 -242.75 -1.21 -9.32 16 6 C 0.03 0.33 9.63 60.07 0.58 0.91 16 7 C 0.06 0.82 5.62 -3.77 -0.02 0.80 16 8 C 0.05 0.73 5.24 -3.77 -0.02 0.71 16 9 N -0.53 -8.32 4.73 -226.49 -1.07 -9.39 16 10 C 0.06 0.85 5.54 -3.82 -0.02 0.82 16 11 C 0.02 0.43 5.73 37.16 0.21 0.64 16 12 O -0.38 -8.75 5.81 -35.23 -0.20 -8.95 16 13 C 0.19 5.25 5.69 36.00 0.20 5.46 16 14 C -0.51 -14.82 9.43 -34.44 -0.32 -15.14 16 15 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H 0.07 1.26 5.45 -51.93 -0.28 0.98 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.81 6.39 -51.93 -0.33 0.48 16 33 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.09 1.31 6.24 -51.93 -0.32 0.99 16 36 H 0.04 0.71 6.18 -51.93 -0.32 0.39 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -30.46 306.99 -8.47 -38.93 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.00 Total: -2.43 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.68 Total: -4.03 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -1.54 Total: -45.03 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.20 Total: -8.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.46 -8.47 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.248 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds